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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0143600 |
| Transcript ID | LotjaGi2g1v0143600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal transport/detoxification superfamily protein; TAIR: AT5G23760.1 Copper transport protein family; Swiss-Prot: sp|O03982|HIP39_ARATH Heavy metal-associated isoprenylated plant protein 39; TrEMBL-Plants: tr|I1MPU0|I1MPU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0143600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:52134214..52135720) extracted from Lotus japonicus Gifu genome v1.2.
GTTGAATTGCACCATGCCGCAAGAAATGTACATTGCATTTAAAAGGTCCACAGTCACACGCACAAATAAATTAAAAAAAA AAGAAACTCCACAACCTCACGCCTTTTAGTTTTACCACTATATAGTACAAAGTCCTCAAAATTGTCGACCCTTCATTTCA TCATTGTTAATTTTCACACCTCTTCAAATGGCTCAGGTACTCATTTTCATATCCTGTTTTCTCTGCAGATCTCTCTTTCT TCCTCTTCAGATTTCCAATTATTCACATGTTCATGCTTGTTTTGCTATATTCTTTAAGATACATGTGTGTTATTCAATGA TATGATTTTTACATTATTTTTTAATAATTTTCTTTACCTCCCTCAATGGGTTCATTCTTTGCAGAAAATTGTGTTGAAGG TCTTGACTATGACTGATGACAAAACAAAGCAGAAAGCAATAGAAGCAGCTGCAGATATCTATGGTGAGTAATTCACAGAG AAAATTAAGTACATGTTTGGAAATTCTTTGTGTAGCTTTTGAGTTTTGTAATTGATTATGATGAAACAGAAGCCGATCCA AACATGATATGAATTCTCTACTATGAATTTATAATATATGAAAGGAATTACAGTTATATAATTAAGGGCTGATCTGAATT CTGATCTGTTCAATTTTTTGTGCTTTGATCAATCAGGGGTTGATTCAATAGTTGCAGATGTGAAGGAGCAGAAGCTAACA GTGATTGGTCAAATGGACACAGTGAAAATAGTTAAGAAGCTAAAGAAGGTAGGGAAGGTGGATATAGTATCAGTTGGGCC TGCCAAGGAAGAGAAGAAAGAAGAAAAGAAAGAGGAGAAAAAGGAGGAGAAGAAGGAAGAGAAAAAGGAAGAGAAGAAAG AGGAGAAGAAAGAGGAAAAGAAGGAGGAGAAAAAATAAAGGCAATAGTAAAGTTCTTCAAAATCTTCCCCTTTCTTTTTT TTCTTTGTTTGGCAAATTTTGCTACAATGAGAAGCAACTGTATGCTGCAAAAATTGTGCATAGAGATTTTGCTGTTTCTC TTTTCTTCTCAAATCTGTTGTTCTCTGTCTTTTTTTTTTAAGCATAGATTAATCTTCAATTGCCCAAATGAAAATGGGTT TCAAAAAAATATCTAAATAATTGAGCAAAGTGGAAGTAATAAACCAATTACTTAGATGATTGGGTTTGATTTTTAATTCT TCCCTTTCTTCTTCTGTTTTCAGTCTAGAGAAGCTATTGTAATTCATAAGCTTTAACACACTGTAATGAGCAGTAACATC ATTTTAACCTTCTTTATTTATTCTAATATTTTTATTTTATTTTATTTTATTATGCAAATAGGTCCTGTGCCTGTGATGAT ATCTATGTCTTTTGTTTTGTACCTTTGAATTATGGTTATTCCAATCACTTTTGCGTGTACTTTAAAACAATACATTTGCA GATAGAAAGTCAATAACTATTTAAATTTTTTAAGGGTTACATATATTTTTAGTCTTATAAAACAGGG
CDS sequence (LotjaGi2g1v0143600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCAGAAAATTGTGTTGAAGGTCTTGACTATGACTGATGACAAAACAAAGCAGAAAGCAATAGAAGCAGCTGCAGA TATCTATGGGGTTGATTCAATAGTTGCAGATGTGAAGGAGCAGAAGCTAACAGTGATTGGTCAAATGGACACAGTGAAAA TAGTTAAGAAGCTAAAGAAGGTAGGGAAGGTGGATATAGTATCAGTTGGGCCTGCCAAGGAAGAGAAGAAAGAAGAAAAG AAAGAGGAGAAAAAGGAGGAGAAGAAGGAAGAGAAAAAGGAAGAGAAGAAAGAGGAGAAGAAAGAGGAAAAGAAGGAGGA GAAAAAATAA
Protein sequence (LotjaGi2g1v0143600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQKIVLKVLTMTDDKTKQKAIEAAADIYGVDSIVADVKEQKLTVIGQMDTVKIVKKLKKVGKVDIVSVGPAKEEKKEEK KEEKKEEKKEEKKEEKKEEKKEEKKEEKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 70 | 70 | 6.5E-16 | – | |
| PANTHER | 2 | 96 | 95 | 9.9E-45 | – | |
| PANTHER | 2 | 96 | 95 | 9.9E-45 | – | |
| SUPERFAMILY | 2 | 63 | 62 | 4.71E-7 | ||
| MobiDBLite | 71 | 109 | 39 | - | – | |
| Coils | 72 | 109 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi2g1v0143600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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