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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0196300 |
| Transcript ID | LotjaGi2g1v0196300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aldose 1-epimerase; TAIR: AT3G17940.1 Galactose mutarotase-like superfamily protein; Swiss-Prot: sp|Q8K157|GALM_MOUSE Aldose 1-epimerase; TrEMBL-Plants: tr|I3SJX8|I3SJX8_LOTJA Aldose 1-epimerase; Found in the gene: LotjaGi2g1v0196300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:63065828..63068284) extracted from Lotus japonicus Gifu genome v1.2.
ATTATGGTCCATCATCTCATGGCTCAAAACAAGAAGCTCTGATTCACAATCACAGTCACAAATTCACATTCCTCTTCACT CTTCAATGGCGGATCAGAACCAGAAAGCAGAGATCTTCGAGCTCAACAATGGCGCCATGCAGGTCCTCATCACCAATCTC GGTTGCACAATCACCTCATTGTCCGTACCCGCCAAAGATGGTGGGTTCGTTTTCATTTTCAAATTCTCAATTTTCATTCT CATTCTCATTGTTTTTCACGAATTATTAATCTAATCATGTGCTGTTGTCTTTGTCTCCTTCGTCAAGGGGTGTTGTCTGA CGTTGTTCTTGGCCTCGACTCTGTTGAATCCTACCAGGTGAGAATTTAGTAAGAGAAAAAACCCCATTCCAAATTTCGAT GTAAATCGTAATGGGTTTTTTAGTTATTACTTGGATTATCTTATGTGACTAATGGGCATTATGTTTCCATTGTCAAAATT CTACCTTTCAAGTTTTAGCCATTGCAACCATTTGGAGCTATGTGCAATCAGAATTATTCATGCTCTGTGTATGCAATGCA TGCATCTAAATGAGTGTCATAGGAGTTAGTTAATATCAATTTACATGAATTTTTAAATAAAATCAATCTTGGCTTTTTTG TGTTGATGAATTCCTTTTGCATCTTTCATAGTCTTATTATATTATATGATGCACTCTTTATGTATGGGTATGTAGTTTTT AATTTTATTTGGATGATTGATACTTTAAATTGTGTGTCTCTTGTTGCAAGCAGAAAGGTCTTGCTCCTTATTTTGGCTGC ATTGTGGGTCGGGTGGCGAACAGAATTAAGGATGGCAAGTTTACACTTGATGGGGTTGAGTACTCTCTGCCTGTCAATAG ACCACCAAACAGTCTCCATGGTATCAATTCTATGTCTTAATAGTCTTTGTTCGTCCTGTGTTTTGTTCTGGTATTCTGGG AGGTTGAAATTGGAAATTCTATGTTTAGATCTTCTGATCCATTTATGCTGACAAGAGAAAATGTTTTGCCATCTAATCTG CTAGATAATGAAATTTTATTATTCAAATGTATGCATTTGATTAGGGACTTAGGGTCATCTTGTGAAGATTATGAACTGTG ATTTTAAAAGTCCATTAAAAATTGTTTTTGAAACGGAAGGCAAAGCTAACAGCGATCTGTCATGGACTTAGCCAGTACAA TTTTATCTGTTATTCTCAAGAATGACAAACCATGTAACAATTAGGGATAGACATTGTGCTCTTTTGACTAATTTTATGAT TCTGAAATGGAATTTAAATCACAATTGTTTTCTGAAGAAAGCAAAAATCACACTGTTACAATGATATATGATTTTCATTT GCTGTTTTCCTGATCCTCTGTCTCTTCCAAATTTAGGTGGCAATGTTGGGTTTGATAAGAGGATATGGGAGGTAACTGAA TATAGGAAAGGTGAAACCCCATCAATCACTTTTAAGTATCACAGTCATGATGGAGAGGAAGGTAGTGCTTATTCTCTCTT CCTCCAGTTTTTAACTCACTCTTCATAGTTCCCTTTAACTGATTTTTCTTTCTATCATACGAGGCTATCCGGGGGAAATC ACTGTAACCGCAACATATACGCTCACCTCAAACACAACTCTGAGGCTTGACATGGAAGGAGTGCCGAAGGACAAGCCCAC CATAATTAACTTAGCTCAGCACACCTACTGGAACTTAGCCGGCCACAGCTCAGGGAATATACTTGACCATTCAATTCAAA TTTTGGCTAATCATGTCACTCCAGTGGATCAGAATACGGTACCAACTGGTGAAATTATGCCGGTGAAGGGCACCCCTTTT GATTTCACATCTCAAAAGAGAATCGGCGACACAATTAGTCAGGTTGGAATGGGATATGACCACAACTATGTACTTGATTG CGGGGAAGAGAAAGAAGGTTTGAGGCATGTTGCAAAAGTGAGGGAGCCATCGAGCTCGAGGGTGCTGAACTTGTGGACAA ATGTCCCTGGTATGCAATTTTACACAGCAAACTATGTTGATGGCGTTGCTGGAAAAGAAGGTGCTGTGTATGGAAAGCAT GCTGGGTTATGTCTGGAGACACAGGGATTCCCCAATGCCATAAACCAGCCAAATTTTCCATCTATTGTGATTCGACCTGG TGAGAAGTATCAGCATACCATGTTGTATGAGTTTTCAGTTGAGTGAAGCAATGCTGTTAAAGAAGTATTGGAATAAGGTA GACTTGCATATTATGATCTAGAACCTGGACATTGGTTTCTCCTGGATCAACTTTTGTTCGAATAAATGCAAGAGTTATTC CCTGTCTCAATTTTAAGAGCAATTTATGAGCTGTTTTATCACACTTCTAAATTAGTCGTATTATATTGCACACTAAATCC TGTTTCTAAGTTTCAGTTAAAAACATCCATATTTAATTACACTCCTACATCCATTTT
CDS sequence (LotjaGi2g1v0196300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGATCAGAACCAGAAAGCAGAGATCTTCGAGCTCAACAATGGCGCCATGCAGGTCCTCATCACCAATCTCGGTTG CACAATCACCTCATTGTCCGTACCCGCCAAAGATGGGGTGTTGTCTGACGTTGTTCTTGGCCTCGACTCTGTTGAATCCT ACCAGAAAGGTCTTGCTCCTTATTTTGGCTGCATTGTGGGTCGGGTGGCGAACAGAATTAAGGATGGCAAGTTTACACTT GATGGGGTTGAGTACTCTCTGCCTGTCAATAGACCACCAAACAGTCTCCATGGTGGCAATGTTGGGTTTGATAAGAGGAT ATGGGAGGTAACTGAATATAGGAAAGGTGAAACCCCATCAATCACTTTTAAGTATCACAGTCATGATGGAGAGGAAGGCT ATCCGGGGGAAATCACTGTAACCGCAACATATACGCTCACCTCAAACACAACTCTGAGGCTTGACATGGAAGGAGTGCCG AAGGACAAGCCCACCATAATTAACTTAGCTCAGCACACCTACTGGAACTTAGCCGGCCACAGCTCAGGGAATATACTTGA CCATTCAATTCAAATTTTGGCTAATCATGTCACTCCAGTGGATCAGAATACGGTACCAACTGGTGAAATTATGCCGGTGA AGGGCACCCCTTTTGATTTCACATCTCAAAAGAGAATCGGCGACACAATTAGTCAGGTTGGAATGGGATATGACCACAAC TATGTACTTGATTGCGGGGAAGAGAAAGAAGGTTTGAGGCATGTTGCAAAAGTGAGGGAGCCATCGAGCTCGAGGGTGCT GAACTTGTGGACAAATGTCCCTGGTATGCAATTTTACACAGCAAACTATGTTGATGGCGTTGCTGGAAAAGAAGGTGCTG TGTATGGAAAGCATGCTGGGTTATGTCTGGAGACACAGGGATTCCCCAATGCCATAAACCAGCCAAATTTTCCATCTATT GTGATTCGACCTGGTGAGAAGTATCAGCATACCATGTTGTATGAGTTTTCAGTTGAGTGA
Protein sequence (LotjaGi2g1v0196300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADQNQKAEIFELNNGAMQVLITNLGCTITSLSVPAKDGVLSDVVLGLDSVESYQKGLAPYFGCIVGRVANRIKDGKFTL DGVEYSLPVNRPPNSLHGGNVGFDKRIWEVTEYRKGETPSITFKYHSHDGEEGYPGEITVTATYTLTSNTTLRLDMEGVP KDKPTIINLAQHTYWNLAGHSSGNILDHSIQILANHVTPVDQNTVPTGEIMPVKGTPFDFTSQKRIGDTISQVGMGYDHN YVLDCGEEKEGLRHVAKVREPSSSRVLNLWTNVPGMQFYTANYVDGVAGKEGAVYGKHAGLCLETQGFPNAINQPNFPSI VIRPGEKYQHTMLYEFSVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 339 | 339 | 3.3E-128 | ||
| PIRSF | 1 | 339 | 339 | 9.8E-122 | ||
| SUPERFAMILY | 4 | 337 | 334 | 4.96E-116 | ||
| PANTHER | 6 | 338 | 333 | 1.5E-174 | – | |
| PANTHER | 6 | 338 | 333 | 1.5E-174 | – | |
| CDD | 11 | 336 | 326 | 4.91688E-170 | – | |
| Pfam | 11 | 334 | 324 | 4.0E-97 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Isomerase activity | Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. | ||
| Biological process | Hexose metabolic process | The chemical reactions and pathways involving a hexose, any monosaccharide with a chain of six carbon atoms in the molecule. | ||
| Molecular function | Carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
Expression pattern of LotjaGi2g1v0196300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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