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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0196900 |
Transcript ID | LotjaGi2g1v0196900.5 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | C2 domain-containing protein; TAIR: AT1G48590.3 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|Q9LVH4|CAR4_ARATH Protein C2-DOMAIN ABA-RELATED 4; TrEMBL-Plants: tr|A0A0R0I9T6|A0A0R0I9T6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0196900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:63183033..63185208) extracted from Lotus japonicus Gifu genome v1.2.
AAAGAAATGGAAGATTCAACACCAAAGTCTCTGATGGAGAACCTGCTAGGCCTTCTCAGGGTTCGTGTTAAGCGTGGCGT CAACCTTGCTGTTCGTGATGTTCGTAGCAGTGACCCTTATGTTGTTGTTAAGATGTACAATCAGGTTCATCTTCATCTTC TCATTCAATTTCTCAACTTCTCAGTTTTTTTTGTACCACTGATCATAAAAATTCATTCTTCTTCTTTTTCTTCATTGATC CACTTTTCTTGCAATTGATTCAAGGACCCTTTTTCTATTTAAACAAAAATTTGCTCTTAATTGTGCAGAAACTCTTGCTT CCATTTTTTTTTTCTTCTATGTAGTTAATGGATGTAAATTGTAAAACCATGAAAACCTATGATGTCTTTGTTTTGATCAG ATTTATGGTGTGATAAAATTTTTCATTTTAATCTATGTCTTCACTGATGTTAAATTGCATGGGGGGTTATGAAATATGAT GGGCAAGGCAAGATTCTGATGATTGAAGAATTTGATGCAATATATATTCTAGTAGATCTTGTCTAATTATGCATAATCAT AACTTGAGTTTTTTGAATTTGTATTCCAGAAACTTAAGACTCGTGTGATTAAGAAGGATGTTAATCCTGAGTGGAATGAA GACCTTACCCTTTCTGTCATAGATCCTCATCACTCCGTTTTGCTGGTAAGTGACTGAATTGGTTTGTTTATGTCTTTTCA AGTTGAATTGAATTGAATTGAATTTCATTTTTAATTGGTTTCCCAGGACATCTTAATTACTCATGGTCTCATGATGTCCT TGTCTTTATGGTAGGGAAAAATATTTTTAAGAGAAAAATCTACATAGATGATAGAACACACACATACACCTGAACATTTT TGGACTGTCTGTAATTGAACATCCATATATACCCCACTTCATGAATTGATGTGTTCTGATGCAACAAAGTTTATCATTTC ACATGTCCTGCCTTGAAAATTAAACTGCCTTATAGTATGCTAGGATCAACTTCTCTTTACACATAATCAATTCTGACACT CATAAGCTACTCATAGAAGTTTCTCCCTATAATTGGTTTTGACGTTAGAATAAATTCTAGATGCATTTCCAAAAGAAAAC TGATGTTATTCTTGCACCACTAGTAAATGTAGTAACACTGACCATACCCATGCATTTGTACTTGGATGCCTTATTTACTT GGATATGCAATATGAACTATAGAAAAGTGAACACTTCTTTATATTTGGCAAGTTTCACTGCATCCAGGTCAAATAATGCT CTCTTTTTCTGCTGTATTTGTTTTTAGAGTATTGGTGACGAGTGCCCTAAAGGGAAAACTGGTAATGGACCATTGAAAAC ACTATTAAATACTATCAATCACTTAAAAGGAAAATATTAAAATTCTTAGTTACAATTAGTTAGCTAGTAACCTAAGGACC AACAGGTGGTTGGTTCAAGTAGTACATGTTTGATTTTCCTTAAGCAAGGCCTTGGGTTAAAGTCTAGTGAATGGGAAAAC CCCTGGGGGAGAGCTAGCTCCACCAAGATGTGGATGTTCTCAGCTCGAACATGATTGTCTAATGTGGAAGATACCTTTCT TTATACCAAAACATGTTAGTAACCTCAGGTAGTTAGAAAGGTAGGATGTTATAATTTATGTAATTAATAGGTGCAGCTCT GCTATGTGTGTTCTGTTCTTTAATTTGGGCTATTACACCCTTTTCTATCAAATAAATGCTTTCTTTTTCGTCAAAGTTTT CGATTTTTGTTTCTTTAGGGCACTTGTTAGCATTCTCCTTTGTATTTATCTGAGATTTTCTGATGTATCATTTTTTGTTC ATTCTATTGGACTGCACACTAGTTAATAATCTTTTCCAATTGCAGACTGTGTATGACCATGACACTTTTAGCAAAGATGA CAAAATGGGAGATGCGGAATTTGAAATCTTTCCCTATATAGAAGCCTTGAAGATGAACGTAACTGGCCTTCCCAACGGCA CCGTGATCAAGAGAATACAACCAAGCAAGGAGAATTGCTTGGCGGACGAGAGCTGTATCTATTATAACAGCGGCAAAATT ATCCAAGACATGATCCTCAGATTGCGACATGTCGAATGTGGTGAAGTGGAAATCTCGTTGCACTGGATTGATCTTCCCGG TTCTAAGGGTTTATGA
CDS sequence (LotjaGi2g1v0196900.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATTCAACACCAAAGTCTCTGATGGAGAACCTGCTAGGCCTTCTCAGGGTTCGTGTTAAGCGTGGCGTCAACCT TGCTGTTCGTGATGTTCGTAGCAGTGACCCTTATGTTGTTGTTAAGATGTACAATCAGACTGTGTATGACCATGACACTT TTAGCAAAGATGACAAAATGGGAGATGCGGAATTTGAAATCTTTCCCTATATAGAAGCCTTGAAGATGAACGTAACTGGC CTTCCCAACGGCACCGTGATCAAGAGAATACAACCAAGCAAGGAGAATTGCTTGGCGGACGAGAGCTGTATCTATTATAA CAGCGGCAAAATTATCCAAGACATGATCCTCAGATTGCGACATGTCGAATGTGGTGAAGTGGAAATCTCGTTGCACTGGA TTGATCTTCCCGGTTCTAAGGGTTTATGA
Protein sequence (LotjaGi2g1v0196900.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDSTPKSLMENLLGLLRVRVKRGVNLAVRDVRSSDPYVVVKMYNQTVYDHDTFSKDDKMGDAEFEIFPYIEALKMNVTG LPNGTVIKRIQPSKENCLADESCIYYNSGKIIQDMILRLRHVECGEVEISLHWIDLPGSKGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 6 | 47 | 42 | 2.0E-79 | – | |
PANTHER | 6 | 47 | 42 | 2.0E-79 | – | |
SUPERFAMILY | 11 | 68 | 58 | 1.71E-10 | – | |
Pfam | 15 | 45 | 31 | 0.0075 | ||
PANTHER | 47 | 142 | 96 | 2.0E-79 | – | |
PANTHER | 47 | 142 | 96 | 2.0E-79 | – | |
Pfam | 47 | 67 | 21 | 0.86 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0196900.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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