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LotjaGi2g1v0269100.5

Overview

Field	Value
Gene ID	LotjaGi2g1v0269100
Transcript ID	LotjaGi2g1v0269100.5
Related isoforms 7	LotjaGi2g1v0269100.1 LotjaGi2g1v0269100.2 LotjaGi2g1v0269100.3 LotjaGi2g1v0269100.4 LotjaGi2g1v0269100.6 LotjaGi2g1v0269100.7 LotjaGi2g1v0269100.8
Lotus japonicus genome version	Gifu v1.2
Description	Alpha-1,4-glucan-protein synthase [UDP]-forming] 1; TAIR: AT5G15650.1 reversibly glycosylated polypeptide 2; Swiss-Prot: sp\|Q8RU27\|UPTG2_SOLTU Alpha-1,4-glucan-protein synthase [UDP]-forming] 2; TrEMBL-Plants: tr\|V7C245\|V7C245_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0269100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:73843437..73845481) extracted from Lotus japonicus Gifu genome v1.2.

GCTGCAATGGCTAACACTGCTTCTGTGGCACCAACACCACTACTGAAAGATGAGCTTGACATTGTCATCCCCACCATAAG GAACCTTGATTTCCTTGAAATGTGGAGGCCATTCTTTGAGCCTTACCATTTGATCATTGTTCAGGATGGTGACCCTTCCA AAACCATTCAGGTTCCTCCAGGTTTTGATTATGAGCTGTATAACCGCAATGACATTAACAAGCTTCTGGGTCCAAGAGCC TCTTGCATTTCATTCAAGGACTCTGCTTGCCGCTGCTTTGGCTACATGGTGTCTAAGAAGAAGTATATCTTCACCATTGA TGATGACTGTTTTGTGAGTTTTTTTCCCAACCCTTTTTTTCTTTTTAATTTTCCTTTTCTGGGGTTTGAGTTTGTTCATT GTTTATTGACCTGAATGAATTCATTTTCATGCCTCCATATGAATGTGGTGACTTTGTTTGCATATTCTCCCGTACATTGT ACATTTTGGGTCTTGTTGTTCTGTTTAAGTATGATCATTAGTCTTTGTTGTTCTGCTTTATGGGTGAAATTCAGATTTGC CCTGCAGCCAGGTCAGCTGTGTACATTGGTTTTATTCATTGAATCTATTAACCATATATTTGTGCATTTATAGAATTTCA TTGATTCATAATGCTAGTTTCTACATTTTAGGATTACTTATATTTATTTGATATTTTGTGGCTTAGGTTGCCAATGACCC ATCTGGAAAATCGATTAATGCACTTGAGCAGCATATTAAGAACCTTCTTTGTCCTGCCACTCCCTACTTTTTCAATACCC TCTATGATCCCTTCAGAGAAGGTGCAGATTATGTTCGTGGATACCCTTTTAGTCTTCGTGAAGGTGCACCAACTGCTATT TCTCATGGACTCTGGCTCAACATCCCAGACTATGATGCTCCTACACAGCTTGTGAAGCCTCTGGAGAGGAACACTAGGTA TGTACTATGTACTAGTATGCAGCACTCACATGAAACTATTATTAAAAATTTGAAGTTATTAGCCTATGTAAAGCATGTTT GGTTCAAATTTCCTCAGATTCAATTCTGAAACAGAAGTTTCTTTTCAGAATTGATAACAACTATAGAATCAATTCTAGAA TGATTTTCAAACATGCAGATATGCGATTTGGATTATAAATATTGTGCTTGATTGTGCATCAGGTATGTGGATGCTGTTCT GACCATACCAAAAGGCACTTTATTTCCAATGTGTGGAATGAATTTGGCATTCGATCGTGATCTGATTGGACCAGCAATGT ACTTCGGTCTCATGGGAGATGGTCAGCCAATTGGACGCTATGATGATATGTGGGCTGGGTGGTGCTGCAAGGTCATTTTT TGCTTTCTACATGTTTGGATCAACTTCTCTTTCATCAAAATTATCTAGAAGCTACTCATAGAAGCTTCTCCCCAAACCTG ATTGCGGCTTCAAAATCAATTGTAGAAGTGTTTCTGAACATGCATTCTATTATTACCCTTGTGGATTAGGATATATATAA CATGAAGATAATCTTATAGAAACAGCTCATAGTTAAATGGATAATTTAGCATAAATTAACAACTGAGATATTTTCATGAT GATTTGCTCAGGTGATCTGTGATCATATGGGGCTTGGAATCAAGACTGGTCTTCCCTATATCTATCACAGCAAGGCAAGT AACCCATTTGTAAACCTGAGGAAAGAGTACAAAGGCATTTTCTGGCAGGAAGACATCATCCCATTCTTCCAGAGTGTTGT TCTTCCAAAAGAATGCACCACTGTTCAAAAGTGCTACATTGAGCTCTCTAAGCAAGTCAAGGAAAAGCTTTCAAAGATAG ATCCTTACTTTGACAAGCTTGCAGATGCCATGGTCACTTGGATTGAAGCTTGGGATCAGCTTAACCCTGCTGGAGCATCT GAGGCCAATGACAAAGCCTAAATCAATCTTGGTTAACAGCAAACACAGCACTGAACTTATTTATATATTATACTTTTCTC AAGTTTTCTGGTCAAATTTCTTTTCAACTCACCTTTAGTGTCACT

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0269100.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTAACACTGCTTCTGTGGCACCAACACCACTACTGAAAGATGAGCTTGACATTGTCATCCCCACCATAAGGAACCT TGATTTCCTTGAAATGTGGAGGCCATTCTTTGAGCCTTACCATTTGATCATTGTTCAGGATGGTGACCCTTCCAAAACCA TTCAGGTTCCTCCAGGTTTTGATTATGAGCTGTATAACCGCAATGACATTAACAAGCTTCTGGGTCCAAGAGCCTCTTGC ATTTCATTCAAGGACTCTGCTTGCCGCTGCTTTGGCTACATGGTGTCTAAGAAGAAGTATATCTTCACCATTGATGATGA CTGTTTTGTTGCCAATGACCCATCTGGAAAATCGATTAATGCACTTGAGCAGCATATTAAGAACCTTCTTTGTCCTGCCA CTCCCTACTTTTTCAATACCCTCTATGATCCCTTCAGAGAAGGTGCAGATTATGTTCGTGGATACCCTTTTAGTCTTCGT GAAGGTGCACCAACTGCTATTTCTCATGGACTCTGGCTCAACATCCCAGACTATGATGCTCCTACACAGCTTGTGAAGCC TCTGGAGAGGAACACTAGGTATGTGGATGCTGTTCTGACCATACCAAAAGGCACTTTATTTCCAATGTGTGGAATGAATT TGGCATTCGATCGTGATCTGATTGGACCAGCAATGTACTTCGGTCTCATGGGAGATGGTCAGCCAATTGGACGCTATGAT GATATGTGGGCTGGGTGGTGCTGCAAGGTGATCTGTGATCATATGGGGCTTGGAATCAAGACTGGTCTTCCCTATATCTA TCACAGCAAGGCAAGTAACCCATTTGTAAACCTGAGGAAAGAGTACAAAGGCATTTTCTGGCAGGAAGACATCATCCCAT TCTTCCAGAGTGTTGTTCTTCCAAAAGAATGCACCACTGTTCAAAAGTGCTACATTGAGCTCTCTAAGCAAGTCAAGGAA AAGCTTTCAAAGATAGATCCTTACTTTGACAAGCTTGCAGATGCCATGGTCACTTGGATTGAAGCTTGGGATCAGCTTAA CCCTGCTGGAGCATCTGAGGCCAATGACAAAGCCTAA

Download CDS Sequence

Protein sequence (LotjaGi2g1v0269100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MANTASVAPTPLLKDELDIVIPTIRNLDFLEMWRPFFEPYHLIIVQDGDPSKTIQVPPGFDYELYNRNDINKLLGPRASC ISFKDSACRCFGYMVSKKKYIFTIDDDCFVANDPSGKSINALEQHIKNLLCPATPYFFNTLYDPFREGADYVRGYPFSLR EGAPTAISHGLWLNIPDYDAPTQLVKPLERNTRYVDAVLTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYD DMWAGWCCKVICDHMGLGIKTGLPYIYHSKASNPFVNLRKEYKGIFWQEDIIPFFQSVVLPKECTTVQKCYIELSKQVKE KLSKIDPYFDKLADAMVTWIEAWDQLNPAGASEANDKA

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31682:SF25 View details on PTHR31682:SF25 Search for proteins/transripts with this domain View external data on PTHR31682:SF25	4	358	355	8.2E-252	–
PANTHER	PTHR31682 View details on PTHR31682 Search for proteins/transripts with this domain View external data on PTHR31682	4	358	355	8.2E-252	IPR037595 Show description in modal box View details on IPR037595 Search for proteins/transripts with this domain View on EBI InterPro Service
PIRSF	PIRSF016429 View details on PIRSF016429 Search for proteins/transripts with this domain View external data on PIRSF016429	7	351	345	1.0E-195	IPR004901 Show description in modal box View details on IPR004901 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03214 View details on PF03214 Search for proteins/transripts with this domain View external data on PF03214	13	347	335	3.0E-176	IPR037595 Show description in modal box View details on IPR037595 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53448 View details on SSF53448 Search for proteins/transripts with this domain View external data on SSF53448	38	247	210	3.7E-6	IPR029044 Show description in modal box View details on IPR029044 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016866 View details of GO:0016866 AmiGO InterPro QuickGO	Molecular function	Intramolecular transferase activity	Catalysis of the transfer of a functional group from one position to another within a single molecule.	Subterm of View details of GO:0016853
GO:0071669 View details of GO:0071669 AmiGO InterPro QuickGO	Biological process	Plant-type cell wall organization or biogenesis	A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellulose- and pectin-containing cell wall.	Subterm of View details of GO:0071554

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0269100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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