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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0335600 |
| Transcript ID | LotjaGi2g1v0335600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA recognition motif; TAIR: AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9LFD5|BPA1_ARATH Binding partner of ACD11 1; TrEMBL-Plants: tr|I3SDF9|I3SDF9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0335600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81144829..81146614) extracted from Lotus japonicus Gifu genome v1.2.
TTCCAGATAAAAACTGTTAAAGTCTGTAATGTTTCCTTGGGAGCAACTGAGCGAGACATAAAGGAGTTCTTTTCTTTTTC TGGTGATATTGAATATGTCGAACTGCACAGGTCAGTTACCGTGCTTGGTTTTGTGTAATCCCGTCTTTAGAGTGCTTTCA CTGTATATTTTGTTATGCAAATCATAAATGTATTTATTGATCATTGATTCAGTCATGATGAGCGATCACAAATTGCTTAT GTTACCTTCAAGGATTCGCAGGGAGCTGAGACTGCAGTACTGCTATCGGTAATCTGCTTACCATCATTAAAAATATATAT CAATATTTTAATCAATTCACTCTTACAACAAAAAGTCTTGTACTTAGTGATCCTTATCGAGAGAGCCATAGAATTATAGG TCTGTTTGCCATCATCCATAAGGTATTACATTGGGTTGAAATATTTAACTTTTTGGAAAGATAATGCAGTACTAATGAGT TACCTGCTTGAAAAAATAATCTATCTTAGAATCATGGAGTTCTACATATGAAAACTCTTAATAAGAAGCCTTCCATTAGT CTTTTTGTTGATACTTATTTGATATGAAATTATGTATGTAGTAAATGTATTAATGATTAATGGTTACTGTGTTACATAAT GCTGGATACTTCCCTTTTCTCCTCTTTAGTTTGGAATTTCTTCTAATCATGGAATTACTTAGAATTTTTTATTATCATTC AGTATGAGATTGAACATAAATGGAGGAGAGTTAGACAGATATTATCATAGAATCTTATTATCTTACTGATGCTTATCTGA GCTGGTGTTGCATGCTTTACTGGCCAACTAGCTGCTGTCTTATTTCTTGATGGGGTTATCTATTTGTGGTAATTGGAAAG AATTGCTATCAGAAGCAAGGTCTGTTAGCTATAGTGTGGGCCTGTGGGGTGTTAGAACATGTGTCGAATTGTATCAGTTT ATTTTATAACTCATTCTATTTCCCCGTGAACAAATTAGTTTAAGCTGCGATTTATAACTAAATATAACCTAGTTTCACAT ATGTCAGGGAGCAACAATAGTTGATATGTCAGTTACAATAACTTTGGATCCAACTTACCAGCTTCCACCTGCTGCTTTGA CATCATCTGTGAGCCTTCCTTAGCCCCTCATCTATTTATTATTGTACATAATAACTAGGCATACCCAGGCTGTTTTCGCC TTACAGCCATGTATGATGTAACTTTTTGCAGGTAAAAGAAAGTGAAGCTCCTGCTGGTGCTGAATCTGCTTTGCAGAAGG CAGAGGATGTGGTTTCCAGTATGCTAGCCAAGGGTTTCATCTTAGGGAAAGATGCTGTTCACAAAGCTAAGACTTTCGAT GAGAAGCTTCAGTTATCTTCAACAGCATCGGCAAAAGTTGCATCTTTTGACCAGAAAGTTGGGCTTAGTGAGAAAATTAG TGCTGGTGCTTCAGTTGTGAGTGATAAGGTTCGAGAAGTGGATCAAAAGTTTCAGGTTTCAGAGAAGACGAAATCAGCAC TTTCTGCTGCTGAACAGACAGTCAGTACTGCTGGTTCTGCCATAATGAAGAATCGATACATTCTTACTGGGGCCTCCTGG GTAACAGGTGCTTTTAGTAGGGTTACTAAGGCAGCTGGGGAAGTAGGTGAAAAGACCAAAGAGAAAGTAGAGAATGCAGA ACAGCAGCACAAGCAAAACACTGGAGATTCTGGGCCACCAAAAGCAGCAGCAGCAAGTGAGCACTAGTCTTCCAAGCCTG CTCCTGCTCAAGGTTTGATCCTTTGA
CDS sequence (LotjaGi2g1v0335600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGTTACAATAACTTTGGATCCAACTTACCAGCTTCCACCTGCTGCTTTGACATCATCTGTAAAAGAAAGTGAAGC TCCTGCTGGTGCTGAATCTGCTTTGCAGAAGGCAGAGGATGTGGTTTCCAGTATGCTAGCCAAGGGTTTCATCTTAGGGA AAGATGCTGTTCACAAAGCTAAGACTTTCGATGAGAAGCTTCAGTTATCTTCAACAGCATCGGCAAAAGTTGCATCTTTT GACCAGAAAGTTGGGCTTAGTGAGAAAATTAGTGCTGGTGCTTCAGTTGTGAGTGATAAGGTTCGAGAAGTGGATCAAAA GTTTCAGGTTTCAGAGAAGACGAAATCAGCACTTTCTGCTGCTGAACAGACAGTCAGTACTGCTGGTTCTGCCATAATGA AGAATCGATACATTCTTACTGGGGCCTCCTGGGTAACAGGTGCTTTTAGTAGGGTTACTAAGGCAGCTGGGGAAGTAGGT GAAAAGACCAAAGAGAAAGTAGAGAATGCAGAACAGCAGCACAAGCAAAACACTGGAGATTCTGGGCCACCAAAAGCAGC AGCAGCAAGTGAGCACTAG
Protein sequence (LotjaGi2g1v0335600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVTITLDPTYQLPPAALTSSVKESEAPAGAESALQKAEDVVSSMLAKGFILGKDAVHKAKTFDEKLQLSSTASAKVASF DQKVGLSEKISAGASVVSDKVREVDQKFQVSEKTKSALSAAEQTVSTAGSAIMKNRYILTGASWVTGAFSRVTKAAGEVG EKTKEKVENAEQQHKQNTGDSGPPKAAAASEH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 182 | 181 | 1.4E-86 | – | |
| PANTHER | 2 | 182 | 181 | 1.4E-86 | – | |
| MobiDBLite | 158 | 192 | 35 | - | – | |
| MobiDBLite | 158 | 173 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0335600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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