Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi2g1v0379500.1

Overview

Field Value
Gene ID LotjaGi2g1v0379500
Transcript ID LotjaGi2g1v0379500.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description 3-dehydroquinate synthase; TAIR: AT5G66120.2 3-dehydroquinate synthase; Swiss-Prot: sp|U3KRF2|DHQS_ACTCH 3-dehydroquinate synthase, chloroplastic; TrEMBL-Plants: tr|G7JXJ9|G7JXJ9_MEDTR 3-dehydroquinate synthase; Found in the gene: LotjaGi2g1v0379500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:87631363..87635710) extracted from Lotus japonicus Gifu genome v1.2.

TTTATTGTTGAACCGACTCATTTTGGGTACCACACCTTAGTCTGGCTTAAAGTACCACAGCAAACACCAAAAACTTATGC AGAAAAAATTAACTCTACCATAATATAAATGTTATCAGCTTAAATACGATTAACTCATGCGGATGTTTTCGACTCGAACC GGAACTAACTAAAACCAAACAAAATATAGATTACTTTAAAAAATCAGTTGCCTCACTCACCTAACCCCGAGTCATCGTCT TGTGTTCAACAAACCACAGCATGTTCTGGTTACCTTCTTCTTCAGTCACCAACCACCAAACCACACCATCACACCCATTC CTCTCGTTTCATTCCTGAGTCTCCCTCCAATGGCTTCTTCTGCACCCACCACCCATTTCTCTCTTCCTCTCGGCTCCAAA CAAGCAGCAACCACCTCTTCATCAACCGCAACCCCCAAATCCACCCACCTCTCTTTTGCACCTCCCCATGCTTTATCCTC CCACCCCAGAACCCATTTTCGGTTGAACCCCAAGTGGGGTTCTGTTTCAACCGCGTGTCCTGCTGTGAGGAGGTCAATGA TATGCGCTAGTTCTTCCCAAGTTATGGATCCCTCTGCACCAATAATCGAACCTGGTGTTCCAGCCATTGTCGATGTCGAT TTGGGTAATCGGAGCTACCCCATTTACATCGGATCCGGGTTGCTTCAAAAACCCGAGTTGCTCCAGAGGTTACAATTCGT TGACCAATTATATTTGTTAAATTTAAATTCTTATCAGTTTATATAAATAAGCTAGTTTATGGTTCAAGTGGTACATGTTT GAATTCCCTTAAGCGAGTTGTCTTGTGGATGGAAAAACTCTCCGCTGGAAGAGTTAGCCCCATCAATCATGGTGTGGATG TTCCCGGCTCGAACTGGATTGTCTTCGAAGGAGAACACCTGTCTTACACCAAAAAATAAGCTAGTTGGAAGTGTTGGATT TCCACTTCCTCAATTTTCAATTAGTTGTGTAGTGTTAATTGTGCTACTCACTTTCCAAATATTCATGAGAATTCAGTTTT GTAATTAGGGAGGGATTTTACTTTATGTTTTTATTATTATGAATTCTGAAGTGCTTTGTGCTTACTAGTTAGTTGTTGTG TAATAGGCATGTCCATGGGAAGAGGGTCCTCGTTGTCACTAATGAAACGGTTGCGCCACTGTATCTGGACAAAGTTATTG ATGCCTTGACTAAGGGAAACCCGAATGTTTCTGTTGAGAGTGTGATATTGCCGGATGGGGAGCAGTACAAGAACATGGTA GGTCTTTCGTGTTCGAATTGGCTGTTGTGTTTAATGGCAGTCTTGGTGATTGCATTAAAAGTGTTTTCATGTTCAACTTG TAGGATACTCTTATGAAAGTCTTTGACAAGGCCATTGAGTCACGGCTGGACCGGCGATGTACATTTGTTGCCCTCGGAGG TGGTGTGATAGGTGATATGTGTGGCTTTGCTGCTGCTGCCTTCCTACGCGGTGTTAATTTCATTCAGATTCCTACCACTG TTATGGCACAGGTCTTTCATGGTTATTTTTTAAGATTTCTTTCATTGTATATGTCAATTAGATCTGTTGCTGCTCAATCT AACATTAATGATTCTAACCTCTGGCCACTGCCTAAGTTATCCTTTTCCACTATTTATTGGTTTGTGTATTATGTTCCCAG GTTGATTCTTCAGTTGGTGGCAAAACTGGGATAAACCATCGCCTTGGAAAGAACCTGATTGGTGCTTTTTACCAACCTCA GTGTGTGCTTATAGATACGGACACATTAAGTACATTACCAGAGAGGGAACTGGCATCAGGGTTTGGAGAAGTTATAAAGT ATGGACTCATTAGGGATGCTGAATTTTTTGAGTGGCAAGAGAAAAATATGCAGGCATTGATGGCAAGGTAAAAATTTGAT TTTTTATAGTGCTGTGACAAGCTCTCATCCCTGCTTTTAGCCTGTTCTATTTTCATTATGAGGCTTGTAATAATTGGTGA AACAGCTCATGGATGGTAAAAGAATCTTCTGGGAAATGAACGTTAAAATATGTACTTTTGGATGGAAAAAGTATCTCAAA CGTGGGCTTTATGAATTCTCATTACTCATTAGCATATGATATGATGCACATATATGATGTTTTCTTAAAAAATTAAAATG GGAAACAACAATACATGTTAAATTAGCGCGCACACACACACACATATATACATATGTAAAAAGATAAAATAAGATTTATG TACATGTGATTATTCAACCCCAACTCTTATTCCATACATTCTCCCTCTCTCAAGACCCTACATAATAATTTTGAGCTTTG CTTAGCAAGTGCTTTGAGTGTCATTGATATCCAAAAAAATGATAATAGAAGTGCAGCTGTATTGTCGGGTACGGGGCATC AGACACCTACTTTCTTGTTGGTCTATTCTTTCTTATCAGAATATTGTGCAGTTGCTTTCATAATGCTCGTCCACTTACTC CAGTTTTTACAAGTTAATGTAAACCCACTGCAGAGATCCTAATGCACTGGCATATGCTATAAAGCGATCTTGTGAAAACA AGGCCGAGGTTGTGTCCTTGGATGAGAAGGAAAGTGGACTGAGGGCAACATTGAACTTGGGTCATACATTTGGTCATGTG AGTGATTGTTTTTGACTGGTTATTGTATTATTATATGTTGCAAATCTGTAAAATCTGTGTCGTGAAAAGTGAAAACCTTC TTTAGATTTATTTACTCTCCTGATGTGTGGAATTGTTCTTATACTTGGTGATGGGTCAAAGGAAAACAAAAGAAACAGAC ACCCTTGGTTATAGATTAATGTCTTCTGTTCAAGTTACAATTTCAAATGCGATAAAAATAGAATGAGTAAATGGAAACAT GGATTGTTTGAGAAAACATTTGTAGATAAGATGGTGTGCTAGCTTCTTTTTTATTTTTTAGCATGGAATTTTAGTTTCTA CAGTGGATTGAACATGAATAATAACAATCAAGGCTTTTCCATACTACTTGAGGGGGCTACATGGAAATCTGATGCTGCAA TGTCCTATGATTTATGCTGTCTAAAACATTAAATGTGTATTTTTTTGGCACTCTTTTTCCGCAATGATAGGTAATGTCAG ATGTTTGATTATGAATCACTCATGCCACTTCGATGCTATTACTATATTTCTGAGAGTTAATCTAATGACTTCAGAAACTT TCAGCCTCCTAATTCTCAGAGTATTTGCATATTGCAGCTTTTAAAATATAATGGTTAAAAATCTTAGAATTTGTGTTTGT CTGCTGTGTGATCCATGACATCAAATTGTTCTGAAAAGTTTTGCTTGTGTTCTCTTAATTGGTATATTTCCCTCTCTGAT TTATACTCTTCCCCATTTCACTTATTTTAGGCAATAGAAACAGGAGTTGGCTATGGGCAGTGGCTTCATGGAGAGGCTGT TGCAGCTGGCACGGTATCTATATTTTTCAGAATAGAAACACGAATTATGCCTACATCTGTTTTGATTTTGAGGGAAACTG TATGTCAAATGTACACAGGTAATGGCTGCTGACATGTCATATCGCCTAGGTTGGATTGATGATTCTATTGTGAGACGAGT CAGAGACATTTTAATACAGGCCAAGTTACCTATTGCGCCTCCGGAAACAATGACTGTTGACATTTTTAAAAATGTCATGG CGGTGAGTACTGATTCTGCAGTAATCTTTTGATGTTTTTGTTTTTAATTTATGACAAAAGTTTCATATTTAATTTGGTGT ATCAGGTTGATAAGAAGGTAGCAGATGGGTTGCTAAGGCTTATCCTTCTAAAGGGTCCTCTAGGCAATTGTGTTTTCACA GGGGATTATGACAGAAAGGCCCTAGATGATACACTTAATGCATTCTGTAAATCCTGATCTTTGGCCACCATGTTTCTATT GCAGCTTTATGCAATTCTTTTTAATTTGTAGTGAGTTGAGTGCTTGTATGTTGTGATAATCTCACTTGTATTTTTCCTCT GTACTTTAAATTCCATCCATACCCCCATTTTATAGGCAAGACCGCAAGAGTACAAAGTTGTAGAAACTGAGGCATGATCA ATAATAATGATTGGGGCAGATCATATTCTTCCTGTCTCTTTTGTTTCTCACCATATTACTGAATATCTGTATTTTTTTCT GGGGGAGGGAGCTATAGTTTGAGTTGGTTGAACCTTGACAAATTCATTTGTTAGAAAGGATGACTATTGTTTCCTGAACA TGTGTTCTCATGCTTATTGCTTTCAATATACTTTTGTTTAAAAAAAATTAATCAATTTTACATAATTCTATGCTTGTAGT AAAAATATCGTTTTACACAACATTCCAT
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0379500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCTTCTGCACCCACCACCCATTTCTCTCTTCCTCTCGGCTCCAAACAAGCAGCAACCACCTCTTCATCAACCGC AACCCCCAAATCCACCCACCTCTCTTTTGCACCTCCCCATGCTTTATCCTCCCACCCCAGAACCCATTTTCGGTTGAACC CCAAGTGGGGTTCTGTTTCAACCGCGTGTCCTGCTGTGAGGAGGTCAATGATATGCGCTAGTTCTTCCCAAGTTATGGAT CCCTCTGCACCAATAATCGAACCTGGTGTTCCAGCCATTGTCGATGTCGATTTGGGTAATCGGAGCTACCCCATTTACAT CGGATCCGGGTTGCTTCAAAAACCCGAGTTGCTCCAGAGGCATGTCCATGGGAAGAGGGTCCTCGTTGTCACTAATGAAA CGGTTGCGCCACTGTATCTGGACAAAGTTATTGATGCCTTGACTAAGGGAAACCCGAATGTTTCTGTTGAGAGTGTGATA TTGCCGGATGGGGAGCAGTACAAGAACATGGATACTCTTATGAAAGTCTTTGACAAGGCCATTGAGTCACGGCTGGACCG GCGATGTACATTTGTTGCCCTCGGAGGTGGTGTGATAGGTGATATGTGTGGCTTTGCTGCTGCTGCCTTCCTACGCGGTG TTAATTTCATTCAGATTCCTACCACTGTTATGGCACAGGTTGATTCTTCAGTTGGTGGCAAAACTGGGATAAACCATCGC CTTGGAAAGAACCTGATTGGTGCTTTTTACCAACCTCAGTGTGTGCTTATAGATACGGACACATTAAGTACATTACCAGA GAGGGAACTGGCATCAGGGTTTGGAGAAGTTATAAAGTATGGACTCATTAGGGATGCTGAATTTTTTGAGTGGCAAGAGA AAAATATGCAGGCATTGATGGCAAGAGATCCTAATGCACTGGCATATGCTATAAAGCGATCTTGTGAAAACAAGGCCGAG GTTGTGTCCTTGGATGAGAAGGAAAGTGGACTGAGGGCAACATTGAACTTGGGTCATACATTTGGTCATGCAATAGAAAC AGGAGTTGGCTATGGGCAGTGGCTTCATGGAGAGGCTGTTGCAGCTGGCACGGTAATGGCTGCTGACATGTCATATCGCC TAGGTTGGATTGATGATTCTATTGTGAGACGAGTCAGAGACATTTTAATACAGGCCAAGTTACCTATTGCGCCTCCGGAA ACAATGACTGTTGACATTTTTAAAAATGTCATGGCGGTTGATAAGAAGGTAGCAGATGGGTTGCTAAGGCTTATCCTTCT AAAGGGTCCTCTAGGCAATTGTGTTTTCACAGGGGATTATGACAGAAAGGCCCTAGATGATACACTTAATGCATTCTGTA AATCCTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0379500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASSAPTTHFSLPLGSKQAATTSSSTATPKSTHLSFAPPHALSSHPRTHFRLNPKWGSVSTACPAVRRSMICASSSQVMD PSAPIIEPGVPAIVDVDLGNRSYPIYIGSGLLQKPELLQRHVHGKRVLVVTNETVAPLYLDKVIDALTKGNPNVSVESVI LPDGEQYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGFAAAAFLRGVNFIQIPTTVMAQVDSSVGGKTGINHR LGKNLIGAFYQPQCVLIDTDTLSTLPERELASGFGEVIKYGLIRDAEFFEWQEKNMQALMARDPNALAYAIKRSCENKAE VVSLDEKESGLRATLNLGHTFGHAIETGVGYGQWLHGEAVAAGTVMAADMSYRLGWIDDSIVRRVRDILIQAKLPIAPPE TMTVDIFKNVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLNAFCKS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 48 48 - –
SignalP_GRAM_POSITIVE
SignalP-TM
1 19 19 - –
MobiDBLite
mobidb-lite
1 33 33 - –
PANTHER
PTHR43622:SF7
35 455 421 2.9E-245 –
PANTHER
PTHR43622
35 455 421 2.9E-245 –
Gene3D
G3DSA:3.40.50.1970
82 264 183 1.8E-71 –
Hamap
MF_00110
91 449 359 69.005
IPR016037
SUPERFAMILY
SSF56796
96 446 351 6.67E-115 –
CDD
cd08195
102 449 348 3.02632E-178 –
TIGRFAM
TIGR01357
103 444 342 6.1E-112
IPR016037
Pfam
PF01761
159 417 259 8.7E-106
IPR030960
Gene3D
G3DSA:1.20.1090.10
265 455 191 1.0E-69 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003856
Molecular function 3-dehydroquinate synthase activity Catalysis of the reaction: 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate = 3-dehydroquinate + phosphate.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0009073
Biological process Aromatic amino acid family biosynthetic process The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0379500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…