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LotjaGi3g1v0012100.4

Overview

Field Value
Gene ID LotjaGi3g1v0012100
Transcript ID LotjaGi3g1v0012100.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Acyl-protein thioesterase 2; TAIR: AT1G52700.2 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|O95372|LYPA2_HUMAN Acyl-protein thioesterase 2; TrEMBL-Plants: tr|A0A1J7GTH3|A0A1J7GTH3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0012100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:1312745..1316432) extracted from Lotus japonicus Gifu genome v1.2.

CTAGTCCTTTATCCTTCTTTGGAACTTGCATGGATATTGTTGCATGTTTGGTTTCATGATTTGCATTGAATTCAATGTAC GTTTACTTAGAAGCTAATACTTGTAACTTGTAGCTTCTAACCAAAAGTGATCCTTGAGCATTTCACTCTGTAACCAACGT GTTATTAGTTTGTAGATTGATATCAATCAATTATTGGAGCATGTCATATACATATAATACATTTCCTTCTAGCTTGTTGC ATTGTTTAACATGCTGATGTCCATTTAAAGGATTATTATTCATTAGCTGCTACAATTGCAGGTAGTAGAACTGCTCGAAG AGCTTTTGAGTTTGGGAAGACACATGTAGTGAGGCCTAAAGGAAAACATCAAGCCACTATTGTTTGGCTGCATGGCCTTG GTGATAATGGTTTGAGGTATAGATGCTATCAATTCAATATTTGTTATAAGCATGCTAATATTGTTCATAACCTTTAGTTA TTCATTCTCCTACCAGTTCTATATTTTTTTCCTAGGTGACTCCTTTGATGCTTTCTTCCTTTCTCACTTGTTCAACCTTC AATCTTTTTTTTTTCTAGTAGTTTACCTTTTTCACTTCCCAACCTTTCCTTTTGTCCCATTTTTGCACTGCTCTTTATTG CTTTTGGATGGGAAAGTATAAAGTTGAGGTAAGGCTAGATATTCTTTGTTTACTCTAATCCAATCTTCACACGGCATGTT CCGATCAACTTCTCTTTTCTTAGAATCAATTCTGAAACTCAGAAGCTTCTCGTCATAATTGATTGTTGCTTTGGAATTAA TGTTAGAATGATTTCCAAGCATGCACGCAAACTCAATAATGTTTGGTCAGGGAGCTCAAGGAGTTCACACTCTTGCAGCT AGATTTCATTTCTTTCTAATCCAAAAAGTTTCTCCTACTCATTTCTTTTTCTGTTTTGCCTCATTCTTTGCTTTAAGTAC ACAATCCGTATGCGATGGATGAAAATTTGATCAGAAAGTATGTGAAGTATATCGGTAGGATCCAAAAATAAGTATTCCTG ATGTTGAATTTTTTCAGTTTTGAACTACTTTCTGTTTAGATTCTATATGGAATATATTCTGCTGAAGAAAGTAGTGATAA TAGTTCTTAGAAGCTTGGTTGGGAGGAGTATATACTAAGTTCTCAACCCCGGACCACAAGCTTGCTTGCTTTTCTCTTCA CAAATGAACTAAACGTGGCTTTCCACAGAAGAATATATTATATGAATAGAAGCACGTTCCAGAAATGTTTTTTATTCTTG TAGTATGTTTGGATCAATTTTTTTTTCCTCAGAACTGATTTTTCCAGCATAATCAATTGTAGACAGATTTAAAACATGCA CTTAGTGTGATCACATTAGTTTGAGCATTTCAATTCATTGTTGAGTACTTTATGCTAGACAATTTCATAAAGTTTCCGAG TTGGTGTCAGATTTACTGGCTAGAGATATGCTTATCTGATTTTGAACTTTGTTTCATTGCAGCTCATCTCAATTGCTGGA ATCTCTTCGACTTCCAAATGTAAAAACATTTACACCTTCATTCAATTTGAGATTATCTTAATTGCTTCTCTAAGCTATAT TCTCCCTCATAACTATAATATGTTTAACACTTGGTTACTAATACCATGTTTCTCATGATATGGTATGATACAGATAAAAT GGATTTGCCCAACTGCTCCTACCCGTCCTGTGGCATTACTTGGTGGTTTTCCCTGCACTGCATGTAATATGAAATGCTTC CTTCCTCTTACTTGGTTAATTCTATGAGAAAAGAAGTCTAACTTGCTAATTTGAATATTAATCAGGGTTTGATGTGGGAG AACTTTCAGAAGATGGTCCCGATGACTGGGAGGGTTTAGATGCTTCAGCAGCACATATTGCTAATTTATTGTCAACGGAG CCAGCTGATGGTAATTTCCAAACTTTGCAATTCTACTAGGTCCCTTGATATCATCCTACATTAGAATGAATTTTTCTTCA TCTATAACCCTTATCCAAGAATTAATTTTTTTTTTATCAAACTCTATTTTATTATTATGTAACTTCATCTATAACTCATA CTTCTTGGTTCTACATATAATTGATATCTTGAAGATTCATTCTGTTGAAAATTCATTGCCTGACAGTAAAAGTTGGCATT GGAGGCTTCAGCATGGGTGCAGCAATATCACTATACTCTGCAACATGTTTTGCCATGGGAAGGTATGGAAATGGCATCCC ATACCCTGTCAACTTAAGAGCAGTTGTTGGACTAAGTGGCTGGCTTCCAGGATCAAGGTATATTATAAGATAATTTGTTC TCCTAGCGTTGCACTTAGGAAGTAATAAGGGGGACCAATTTCGAAGTTATCCACTGATGATCCACCATTAACAGTCGTTG ATATAATGATTTTTCAATTGACGATCCTGAATCAACGGCAATCAACAGTGGATCACTGGTGGACCACTTCAAAATTAGTC CCATCTATAACTCCTTGTAGCACTTATGTTGACAAAAACTAAGTCATTGTACTGAAACAAGAGGCTTTCCTGATATATTA TGGAAGCAACATCCAGTGTTATTTTCCCATCATTTTCCCAATAATCTTTTCTTAACGTTTATTGAGAAGTATATATTAGT CCTTGTACTATGTGCGAAACTCATTTTGTTACCACTGTGTGGAACCTGCAACTTGTAGGAGCTTAAGGAACAAGATAGAA GTGTCACATGAAGCAAGAAGGCGAGCAGCTTCATTGCCCATTTTGCTGTGCCATGGAACGAGTAAGTATCTATAAATCTT ATCAACTGATGTCATTAGTTCTTTTTATCTGACAGGGATGTTTTTGTATTAAACACTATTTTACTGCATAAGATTCTAGC CTGCATTATAGAAATTCCCAGTTGCTCTCATTATCAATTAAACCCAATTCTGTTAGTCTGGGCACATTAGTAATAAAATC TTTACTACTAATGTGCATGTTCTGCGGTGAGAAACCTCATAATCAAATATGCCGATAATCTATAAGTATAACTTCTAAAA AAACTTCTAAAGTTAGCGTGTTTTGAATTTTGAACCATTGTCCATCCAAACATGCTATTTATATCAAAGCCTTTTGCTGC CATCAATATGCTTACATCAAAGCATGAATGCAATTGTATTGTTTATACTTTATGTTGAAGTTTTAAATGATATATACAAC CTCCAAAACTGATTTTGTAGGTGATGATGTAGTCCTCTGCAAATATGGAGAGAAATCTGCTCAATCCTTAAGTTCAGCAG GGTTTCGATACATTGCATTCAAATCCTATGAAGGGTAACTTCTTATTTGAGACAAAACAATCCCACTTAAGTTATAGTCA ATTTTTTATGCAGTCACTGCAGTTAAGGAACCTCGCCAATAGGACGGAGATTGGATGATTCTTATTTCAGTGAAATAAAT CCTACTTAAGACATGTTCTTACTTCTTAGAGCCAGAGCTCTTCCATTTTTATCTAATGGCCGAGATTGCTTGACTGCAGT TACTACTGCACTAAAAATTGGCTACTTAGAATCCATTTCCTTTAAAGCAGTTGTGCAATAACCCTTTTGTGTCACGCGTG CAGGCTTGGTCATTACACAGTTCCTAGAGAGATGGATGAGATTTCCACCTGGCTTAGTTCAAGGCTAGGGCTTGATGGAA CCTCGTAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0012100.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATATTGTTGATTATTATTCATTAGCTGCTACAATTGCAGGTAGTAGAACTGCTCGAAGAGCTTTTGAGTTTGGGAA GACACATGTAGTGAGGCCTAAAGGAAAACATCAAGCCACTATTGTTTGGCTGCATGGCCTTGGTGATAATGGTTTGAGCT CATCTCAATTGCTGGAATCTCTTCGACTTCCAAATATAAAATGGATTTGCCCAACTGCTCCTACCCGTCCTGTGGCATTA CTTGGTGGTTTTCCCTGCACTGCATGGTTTGATGTGGGAGAACTTTCAGAAGATGGTCCCGATGACTGGGAGGGTTTAGA TGCTTCAGCAGCACATATTGCTAATTTATTGTCAACGGAGCCAGCTGATGTAAAAGTTGGCATTGGAGGCTTCAGCATGG GTGCAGCAATATCACTATACTCTGCAACATGTTTTGCCATGGGAAGGTATGGAAATGGCATCCCATACCCTGTCAACTTA AGAGCAGTTGTTGGACTAAGTGGCTGGCTTCCAGGATCAAGGAGCTTAAGGAACAAGATAGAAGTGTCACATGAAGCAAG AAGGCGAGCAGCTTCATTGCCCATTTTGCTGTGCCATGGAACGAGTGATGATGTAGTCCTCTGCAAATATGGAGAGAAAT CTGCTCAATCCTTAAGTTCAGCAGGGTTTCGATACATTGCATTCAAATCCTATGAAGGGCTTGGTCATTACACAGTTCCT AGAGAGATGGATGAGATTTCCACCTGGCTTAGTTCAAGGCTAGGGCTTGATGGAACCTCGTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0012100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDIVDYYSLAATIAGSRTARRAFEFGKTHVVRPKGKHQATIVWLHGLGDNGLSSSQLLESLRLPNIKWICPTAPTRPVAL LGGFPCTAWFDVGELSEDGPDDWEGLDASAAHIANLLSTEPADVKVGIGGFSMGAAISLYSATCFAMGRYGNGIPYPVNL RAVVGLSGWLPGSRSLRNKIEVSHEARRRAASLPILLCHGTSDDVVLCKYGEKSAQSLSSAGFRYIAFKSYEGLGHYTVP REMDEISTWLSSRLGLDGTS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46234:SF6
14 259 246 2.6E-164 –
PANTHER
PTHR46234
14 259 246 2.6E-164 –
Gene3D
G3DSA:3.40.50.1820
18 256 239 1.1E-61
IPR029058
Pfam
PF02230
28 251 224 2.9E-39
IPR003140
SUPERFAMILY
SSF53474
29 254 226 2.44E-41
IPR029058

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0012100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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