Transcript — View — Lotus Base

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LotjaGi3g1v0081600.2

Overview

Field	Value
Gene ID	LotjaGi3g1v0081600
Transcript ID	LotjaGi3g1v0081600.2
Related isoforms 4	LotjaGi3g1v0081600.1 LotjaGi3g1v0081600.3 LotjaGi3g1v0081600.4 LotjaGi3g1v0081600.5
Lotus japonicus genome version	Gifu v1.2
Description	Phototropic-responsive NPH3 family protein; TAIR: AT5G48800.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp\|Q9FKB6\|Y5880_ARATH BTB/POZ domain-containing protein At5g48800; TrEMBL-Plants: tr\|A0A0S3SWW1\|A0A0S3SWW1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0081600
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:9130547..9133069) extracted from Lotus japonicus Gifu genome v1.2.

TTGAGGGTGGAATGCGATGTTTACATGCATCTTAATTTCAAATTAATTTTCTAATTGATATTGGTGCCTTTTTGTTTCTG ATTGATTGTAACTGTTTTTATCCTTCTAAGTAAAGGAAAGATCAATTTTCTTATATGCTTATGTGTTCTTTTAAGGACTG TGATGAGTGAGGGACTCTGTATATGAGCTCTTCTCTTCTAATATTTAGTTAAGAATCAAATTGAGCTGTCTTGGATTTCA TTAGTGCATGGTTAATAAAAAGAAACGATTTGGTTTTAATGATTCTCCCATTAACCGTTTGTAGGATTTTTCGGGATGTA CCAAGTGATATAACTATAGAAGTGAGTGGAATAACATTTTCATTGCACAAGGTAAGTACTTGCCTCATTTAATTTGAGTT TTTCATTATTCTTATTCATAACAATAACATGTTGATGGCTATGCAGAAGTTTCCTTATGTGATTGTTCTAACTATTGTTT CTTCATATGAAGTTTCCTCTTGTTTCCCGAAGTGGAAGAATTAGGAGGCTAGTTGCTGAACATAGGGATTCTGATATCTC AAGAGTTGAGCTTCTTAATCTTCCAGGAGGTGCTGAATGCTTTGAGTTGGCTGCCAAATTTTGTTACGGCATCAACTTCG AGATCACATCCACAAATGTTGCGCAGCTATGTTGTGTTTCTGATTACCTAGAAATGTCTGAAGATTTCTCAAAAGACAAT CTCGGCTCCCGAGCCGAGGAATATCTTGATAGCATTGTTTGCAAGAATCTTGAAATGTGTGTTGAAGTCTTGCAACAATG TGAAAGCCTGATCCCTCTTGCTGATGAGCTAAAAATAGTTAGCCGCTGCATTGACGCGATAGCTTCAAAAGCTTGCGCGG AGCAAATAGCTTCTAGTTTCTCAAGATTAGAGTATAGCAGCTCAGGGAGGTTGCACATGAGCAGAAATGCCAAAAGTGAT GGTGACTGGTGGATTGAAGATCTTTCTGTTCTTAGAATTGACATGTACCAGAGAGTCATAACAGCCATGAAATGCCGCGG TGTTCGTCCGGAGAGTATCGGCGTTTCACTTGTGAATTACGCGCAGAAGGAACTTACAAAGAAATCCAGCTTGTGGAATC CATCTACCAATGCTAAAGTTGATTCAGATTCCAGTTTACATGAACAGCTTGTGGTTGAGACCATTGTCAGCCTTTTGCCT GTTGAAAAACTCGCTGTTCCGATCAATTTCCTCTTCGGTCTTCTGCGAAGTGCGGTGATGCTTGATTGCGCAATTGCTTC AAGACTTGACCTGGAAAGAAGGATAGGATCACAGCTAGATGTTGCCACTCTTGATGATCTTCTGATTCCGTCTTTCAGGC ACGCAGGCGATACCTTATTTGATGTTGACACAGTTCATAGAATTTTGATAAACTTTTTTCAGCAAGATGATAGCGATGAA GACCTAGAAGATGCTTCTCTTTTTGAATCTGATAGTCCTCCTTCTCCTTCCCAAACTGCATTAGTTAAAGTATCAAAATT AGTTGACAACTACCTTGCTGAAATCGCGCCTGATGCAAACTTGAAGCTTTCTAAGTTTTTGGTCATTGCAGAAACCTTGC CGGCACACGCACGCACCGTTCATGATGGCTTATATCGAGCAATTGATATTTACTTAAAAGTATGTTTTGTTATCTTTGCT TCATACATGTGTACAAAGATTAAGTCGCTATATGTGTTGGTTTTATAATCTTTAAAAAATAGCTTCTCCTAAGAATTGAT TTTAGCTGTAGAATCAATCATAGAAAGACTTCCATACATGCACATAGTATGGTTAAAACAGCCAATTTCTTGTTATACAA GATTTTTATATCATTCATAAACTTCTCTGGCTTAATCAAACATATATATGTGATGTCTGATGTGTATCTATTCTTAAATT CTTCCCTGAGTGATGTCTGCAGGGAAATTTGCAGTTTATACCTGATGCTTTCTGTAAATGTATTTTCAGGCTCATCAAGG TTTGTCAGATTTGGACAAGAAGAAACTTTGCAAAATGATTGATTTTCAAAAGCTTTCTCATGAAGCTGGAGCGCACGCTG CGCAAAATGAGCGCCTTCCTCTCCAGTCAATAGTGCAAGTTCTTTATTTTGAACAACTAAGACTCAGAAACTCTTTGTCC GGCACCTATGGGGAAGATGACCCCAAGCCAATGCACCAGTCGTGGCGCATAAGTAGCGGTGCACTAAGTGCAGCAATGTC TCCACGAGACAATTACGCGTCACTGAGGCGTGAAAACCGTGAGCTCAAACTTGAGTTGGCTAGACTGAGAATGAGATTAA ATGATCTAGAGAGGGAGCATGTTTGCATGAAGAGGGATATGGCGAAGTCCGCATCGCGTAAATTCATGAGTTCTTTCTCC AAAAAAATCACTAAGCTTAGCATCTTCGGACATGGTTCTTCCAGAGGATCAAGTTCCCCATCCAAAAACTCTCATAGAAC AGATTCAAAGGTGATAGAGAGAGTCTGTGCTAGCACAGAATAG

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0081600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTGAAGATTTCTCAAAAGACAATCTCGGCTCCCGAGCCGAGGAATATCTTGATAGCATTGTTTGCAAGAATCTTGA AATGTGTGTTGAAGTCTTGCAACAATGTGAAAGCCTGATCCCTCTTGCTGATGAGCTAAAAATAGTTAGCCGCTGCATTG ACGCGATAGCTTCAAAAGCTTGCGCGGAGCAAATAGCTTCTAGTTTCTCAAGATTAGAGTATAGCAGCTCAGGGAGGTTG CACATGAGCAGAAATGCCAAAAGTGATGGTGACTGGTGGATTGAAGATCTTTCTGTTCTTAGAATTGACATGTACCAGAG AGTCATAACAGCCATGAAATGCCGCGGTGTTCGTCCGGAGAGTATCGGCGTTTCACTTGTGAATTACGCGCAGAAGGAAC TTACAAAGAAATCCAGCTTGTGGAATCCATCTACCAATGCTAAAGTTGATTCAGATTCCAGTTTACATGAACAGCTTGTG GTTGAGACCATTGTCAGCCTTTTGCCTGTTGAAAAACTCGCTGTTCCGATCAATTTCCTCTTCGGTCTTCTGCGAAGTGC GGTGATGCTTGATTGCGCAATTGCTTCAAGACTTGACCTGGAAAGAAGGATAGGATCACAGCTAGATGTTGCCACTCTTG ATGATCTTCTGATTCCGTCTTTCAGGCACGCAGGCGATACCTTATTTGATGTTGACACAGTTCATAGAATTTTGATAAAC TTTTTTCAGCAAGATGATAGCGATGAAGACCTAGAAGATGCTTCTCTTTTTGAATCTGATAGTCCTCCTTCTCCTTCCCA AACTGCATTAGTTAAAGTATCAAAATTAGTTGACAACTACCTTGCTGAAATCGCGCCTGATGCAAACTTGAAGCTTTCTA AGTTTTTGGTCATTGCAGAAACCTTGCCGGCACACGCACGCACCGTTCATGATGGCTTATATCGAGCAATTGATATTTAC TTAAAAGCTCATCAAGGTTTGTCAGATTTGGACAAGAAGAAACTTTGCAAAATGATTGATTTTCAAAAGCTTTCTCATGA AGCTGGAGCGCACGCTGCGCAAAATGAGCGCCTTCCTCTCCAGTCAATAGTGCAAGTTCTTTATTTTGAACAACTAAGAC TCAGAAACTCTTTGTCCGGCACCTATGGGGAAGATGACCCCAAGCCAATGCACCAGTCGTGGCGCATAAGTAGCGGTGCA CTAAGTGCAGCAATGTCTCCACGAGACAATTACGCGTCACTGAGGCGTGAAAACCGTGAGCTCAAACTTGAGTTGGCTAG ACTGAGAATGAGATTAAATGATCTAGAGAGGGAGCATGTTTGCATGAAGAGGGATATGGCGAAGTCCGCATCGCGTAAAT TCATGAGTTCTTTCTCCAAAAAAATCACTAAGCTTAGCATCTTCGGACATGGTTCTTCCAGAGGATCAAGTTCCCCATCC AAAAACTCTCATAGAACAGATTCAAAGGTGATAGAGAGAGTCTGTGCTAGCACAGAATAG

Download CDS Sequence

Protein sequence (LotjaGi3g1v0081600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSEDFSKDNLGSRAEEYLDSIVCKNLEMCVEVLQQCESLIPLADELKIVSRCIDAIASKACAEQIASSFSRLEYSSSGRL HMSRNAKSDGDWWIEDLSVLRIDMYQRVITAMKCRGVRPESIGVSLVNYAQKELTKKSSLWNPSTNAKVDSDSSLHEQLV VETIVSLLPVEKLAVPINFLFGLLRSAVMLDCAIASRLDLERRIGSQLDVATLDDLLIPSFRHAGDTLFDVDTVHRILIN FFQQDDSDEDLEDASLFESDSPPSPSQTALVKVSKLVDNYLAEIAPDANLKLSKFLVIAETLPAHARTVHDGLYRAIDIY LKAHQGLSDLDKKKLCKMIDFQKLSHEAGAHAAQNERLPLQSIVQVLYFEQLRLRNSLSGTYGEDDPKPMHQSWRISSGA LSAAMSPRDNYASLRRENRELKLELARLRMRLNDLEREHVCMKRDMAKSASRKFMSSFSKKITKLSIFGHGSSRGSSSPS KNSHRTDSKVIERVCASTE

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR32370:SF21 View details on PTHR32370:SF21 Search for proteins/transripts with this domain View external data on PTHR32370:SF21	1	487	487	2.0E-240	–
PANTHER	PTHR32370 View details on PTHR32370 Search for proteins/transripts with this domain View external data on PTHR32370	1	487	487	2.0E-240	IPR043454 Show description in modal box View details on IPR043454 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51649 View details on PS51649 Search for proteins/transripts with this domain View external data on PS51649	91	373	283	91.543	IPR027356 Show description in modal box View details on IPR027356 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03000 View details on PF03000 Search for proteins/transripts with this domain View external data on PF03000	91	348	258	3.0E-92	IPR027356 Show description in modal box View details on IPR027356 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	411	445	35	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	469	484	16	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	469	491	23	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0081600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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