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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0122100 |
| Transcript ID | LotjaGi3g1v0122100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Actin, putative; TAIR: AT3G60830.1 actin-related protein 7; Swiss-Prot: sp|Q8L4Y5|ARP7_ARATH Actin-related protein 7; TrEMBL-Plants: tr|G7IWS3|G7IWS3_MEDTR Actin-related protein ARP4; Found in the gene: LotjaGi3g1v0122100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:14934330..14940840) extracted from Lotus japonicus Gifu genome v1.2.
AATGCTGAACTTAGATTTCGTATTGTTATTTTGCTTTACTTTTCCAATGCTTAACTTGGATTATGTATTGTAATTTTGTT TAAATTGGATTATGTAACTTTTCAATTTTAAAGTCATGTTATATTTGCTCCAATTGGACTAAAGTCATGTTATTTTAACT GTAATTAAAGAATCCGAAGGTTTAACTCTCGGACTAGTCCAGAACATCAACCTCTGGACTGGTATGGAGGTTTAAGTCCC GGAGGGTATTCCCGGCATTTTTTTAAAAGGGTGGCAATTCTAAACCCAGGGGTGGGAAATCTAATTCCCTTAATGTACTT CGGCGAAAAATTAGTCTCACGACTCACACTACTACTGATATAGTTGGTCAAAAGTCAAAACCAAAAAAAAATAGTCAAGA ACGAAACTGCATATTCAAAATTAAACCCGCTAATAACTGCAACCTCCTCCTTCATTTCGTTCAGTAGTTGCAGCAGCAGC AGCAGTAGCAGCAGCTCGTAATCGCCACCACTCACTTCAGCGGCAAAAGCTTCTTTCAGAAACCAAAAACTAGGGTTAGG GTTAGGGTTTCCATTCCTTCGCACACAGCCATGGAGGCCGCAGTCATCGACGCCGGTTCCAGCCTCCTCAAAGCCGGTTT CGCAATTCCCGATCAAACTCCCGCAATGGTATTCAATCAATTCCCTACTCTCTTCCAATTTTGCATAAATTGAAGTGTTA AATTTGTGCTGCACCGCAATGTGTGTCCCTAATTGTGCAAATTTTTGTTGTTTGATGGGTTTATGGTGCAGATAATTCCT ACCCAGATGAAACGAATGGTTGATGATGGTTCAGTGAGTGATAATTCGTTGGCGGATGAGATTGCCGTTGATCCGATCGT GCGAGGGTACATTCGAGATTGGGATGCTGTTGAGGATTTGTTGCAATATGTTTTGTACACTGGCCTTGGGTGGGAATTGG GCAATGAAGGACAGATACTATTTACTGATCCACTTTGTACCCCAAAGGTTTTGACTTGACTTGAGGAGTTTCTGTTCAAT AGTCATTTAAAATTAAATTTTAATGATTTTGAAATCCCAGTTTTGATGGGGTTTTTATCAGTTTTTTAGCTTATTTACTG CAATATGCACTTGTAAACTATTTTTGTTCTGTTTGGTTGATCATGGTTTGGGCTTAATGTCATTGCTGTAAATTAAAGCT AGTGAAAATAATCCTTTTCGGTACCATTTTTTTATTTTCTTTGTTATGATTTCTAACTAGATTTAAGTCATTTAACTATC TTTACTGGAAATAACTAGTTATTTACCCAGGTTATCCAAACAGGGTCTTAATGCATGTCTGTTCCAACATTTGCCTCATT GATTACCTAATTCTGTTATGTATTCTTTATACAGGCTGAAACTACTTTTCTGTATGTATATGGTATCTTCTAGGGAAAAT TTATGTTTCCTGTTTATGATTTTATGACTTTATCCAATTGATTGATGGAAATGAAATTGGGGTAGCTAGTTGATAGTATT CTTTAATGTGCATTGCTATACAGATTTTCTTTAACATTTATATTGTATTGTTTTCCAGGCTAATAAAGAACAGTTAGTGC AACTATTGTTTGAAACATTCAACGTATCAGGGTTTTATGCCTCAGAACAAGCAGTGTTGTCACTATATGCTGTGGGACGT ATCTCAGGCTGCACAGTTGATATTGGTTATGGAAAAATAGGTATACTTTTTTAGAGAACCAGAATTGAAGATTTGTTTGA ATTGTATGAATATGTATTACATTTAATTGATGGTTTGTTTGATTTGCTTGCTATAGTGTATGCCAAGTTGTCTGATTAGG ATGTGGATGCATGCTATCTCTGGCACATAATCATGTGATGTTGATGTAGTTAGGGCGCCACGGGTTACGAGACATATGTT GTGTGGTCGTGTTCTCTGTATTGCAATGGAGTAATTAAATAAAAATATATTAAGTTGCTTTATCATGTCTTAGTGATACA ATAAATTGCCCTATCAGCTAAGAAGAGTCAATAAAAGAGTAAGTCCTATAATTTCATCAGATAGTAAAGACTATAACCAA TTTTAGATTTGCATGGAAGGAAAGGTTAAAATCAAGGTTGTCATCTCATCAATCATAGTCTTGGATGGAGAAGTGTTTCC TAAAAAAATGATTGAAAATATAGAGGAGAGAGCATAAAGACGAAGATAAATCATGATAGCTTAGGAAATTAGATATGGGT GATAATTACTAGTAGAACATGTAATGTAAGGTTCTTGTAGGCTTGTTGCAGGTAGAGGTATTGGAGCAGGAAATGAATAC TTGTAAAATCTTTCATTTTAAATTTGACTGGTTACCTTATCTAAATGCACATTAAAAAGAGTTTAGTTCTTCCTATGGAA TCAGTTTTCCGGCAAATGGATTATATAATTTTGTTATGAGTCCTAAACATTAGCTTTTCTCTATTATCCTATTCTCTCCC CAAGGGTTTCCTGTTCATTTAAAGTTAATATACTTTAATTCCATTTTCTGGTACTTTCTAATTTTATACAATAACCAAAG CCTTTTCCCATTGGGTGAGGTATGCCTCATGGATCATTTGATGCCATAAATATTAGTCCTGGTAATTTCTGTTTATCAAA CTAATATTTACAAATACAAGAATATTATTATGGTTATAGGTATTGTATGTGATTTAAAGTAATCTATACATGGTGGGAAC TTGAAAGACTAATAATTCTTATATGGTTGCTTTAGATCTTGGCTTCAGATAAGCGTTCTGTTGTTAAACACTTAAGCTTC TACTACGTTCAGTGTGTGCTATCTAAGTAGATGAACAGATGGCTGAGCCTTTTTCTTTCAATGTGAATTTGCTCTTGATC TTACTAGTTCTTATGTGCCTCTTGATCTTTTTTGCCTTTTGTAATTAGATATTGCTCCGGTAATTGAGGGTGCTGTCAAC CACATTGCCTCGAGAAGATTTGAGTTTGGAGGTACTGATCTCACTAATTTTCTGGCACAAGAACTTGGCAAATCCAATCC GCTAGTGAATATCAGCATGTCTGATGTTGAGAAAATAAAACAGCAATACTCATGTTGCGCTGAAGATGATTTAGCTTATC AGAAGACCCAAGATTCTTGCCCTGCGGAGACACATACCCTTCCTGATGGACAGGTCTGCCTTTTTGTTTTTCAATCTATT AGTTTTGACTTAATATGATACTTGTTCTTGATTTTTTTGTTTGGTCCGTTCTTCCCTCAAGTTTGTTGATGTTCTACTGT AAATGTGTGAATTAACACTGGTTATGGCAGTGGGAAGGAGACAAAAATAAAAGGGATGGTGGGTTGAAATTGAAAGTCAA TAAGGACTAAGGTGAGACTAAGCAGGCTTACTTTATATTGCTCCTGATTTAAACAATGCTTATGGACAGAAGAGAGATGG TTGGCATTTGTTACCTTTGGTTGAGTCATTAACCAGTTATCCCAAAAACTTAGCTATTTGCTAAATGACACATGAATGGT TTTAAATCATATCTCTAACATGTCACAAGAGCCCATTGGGCTTGAAGCGTGTACAATGCACAAGCTCACCTACTTATGGT GAAATTCAACTTTTAATTATAATAATTGGTGTCAACAAGGATCAAACTCTAGATCACTCGGTTATAGAGACTCTGATTCC ATTTCAAGAAGCAACTATCCCAAAATCTTGAGCTGTTGGGTGAATACACATGAATGGTTCTGTATTATATTTCTAACAGG TTGCACTATGTTCTAATTCCTTAGCATTGTCAAGTCTTATTTTTTTGCCTGTTCATGTGGAACTTTCTTTCAGTGTGATG TATGAACTGAATTTTCGATGACATGCTTTACTTGTTCTCTACAAGCTTTGTCAGAAAATTTCATCTTCCAGTAGGAGGCG GTTTAGCAATTCGTTCCTCAAATGGTGTTGAAGCTAGCTACATATGTTTTCATTGAAGGAGGCTTTAGAATATAGGGTCT TAGTAATGGGCATTTATTTATCGGATGTCCCTGAAGGGACTCATTTATTTATACGTTCTTAAAATTAGATTTAGTTGACT TAAGTTATCAAAGCTTCTATTCTAGTTGGTTGAAGTCGAAAGACAATGTTGCTCATCATCATTTCACATCGAGAAGAGGA GATTATCATTGAAATGAAATAAAGACTACTTCAGGTGTAAGTCCGTTTCTTTTTTAGATAAAAGTAATTCAATATGGATG CATAATTTGTATCAGTTCGGTAGAGGCATGGAGACTTGAAGAGTTCTGATAGATTTGTCACCGTACCCATTCCAGAGGAA GATTTGATTTATGAGACTTCAAACATCAACAGTTTTGTTTGACCAATTACAGCAAGTTATAAGTTTCCTGCATGTTTAAC GATATGATCATACAGATGGTCAGAAAGGCCATGGACCTTTAAGTTTTGATTGCCGTTCCCATGATATAATATTCTATCTT AACCTAGAGCTCTCACATTTTAAAGTTGGATCTCTATTATTTTATGACTTGATCTAGCAATTGAACTTTATGTAGGTGAT CACAATTGGAAGAGAAAGATATACTGTCGGTGAAGCTTTATTCCGTCCATCTCTATTGGGTATAGAGGCTCATGGCATTG TTGAGCAGCTTGTCCGTACTATTTCTAGTGTGTCATCTGATAATCATCGGCAACTTCTGGAGAATACCGTGGTTTGTGGT GGCACTTCTTCAATGACTGGTAAATTGTTAGTTTTGGTGAATCTAGTACAAGATTGATCTGAGTTTCTTCTTATTTGTAT TTGAAGCACATTAGACCGATCTTTTGTCTATACATTCAAATTTTTACTAAATGGAATCACAAAACTTTCTACGCAGTATA AGGGATCCTATGTTTCTTTGTTAAATGGGAGTGCAGTAGAACTACATATTGAGACAATATATTTCATATTGTCTAATCTG GATGTAAACTTACAAGGCTATTAACGTAATTTTCTTAAACTTAGTCCTCCTTATTTGTTACAAACGATGCCCAATTTGCA TATGAAGTTTTTCCTTTTTCCAATTCAATCTATATGACTTTGAAGTTAGAATATTGTGGTGATCTGTGTGGTAATGTTTG GACTTCAAAGATAATTTAATGGAGCTATATGGCACAGGGTTCAAGTTCAACTTAGAAGCCTGGTCCAAGTGATATGAATC ACATCTCAGATTCACAAAATTTACTATTCTGCTGTCAATGATTTCGCCGCATTAGTTGCATATGAAATTTGGGTCTATTC TCATTAGCAAGCAAATGCCCGTTGTGTCATATGTCAATTTATTCTGCATGCTCATTACAAAATGAGGGTCATCTCTCAGC AATCTGGCCTCTTTTTATGAATTTTTTGTTTTACTTGTGCCTTCTGACATGCTAATCTTGCTTCTACCTGCAGGTTTTGA AGAGAGGTTTCAGAAGGAATCTTTCCTAAGTTCATCTGCTGTTCGACCTACCCTAGTCAAGGTAATTTGCTTGTAAAGTA AATAATGTAAGACGTCTCATAGGCATTATAAATGTTAACTTGCCGACGCTACCTATCTAAATAGTTGCACAGTTTGGAGG TTAATAATTCTTGAAATCTATTGCATATCGTAATCAAATACAGGATCGAAATCTCTGTCATCCATTTTCTTCTCTGATTA TAGTTCATTGTTGTCATATATTTCTCTGGACATAAACTTTATCGTCATTCATGTTCTAATTTGTTTCTGCTTGTGGGTAA TGTGCGACTTAATGCAGCCTCCAGAATACATGCCAGAAAATTTAACTAAGTATTCTGCTTGGGTGGGAGGTGCCATACTT GCCAAAGTAGTTTTTCCTCAAAACCAGCATGTAACTAAAGGGGACTATGATGAAAATGGACCTTCCATTGTGCATAAGAA ATGCTTCTGATGGGATTCATCTGCACGATCTCTCCTCAAACAGCCAGTTCCTTTACACTGCCTTCATTTGTCTTTAGATT CTATGTGCAATCAGATGCATGTATGATTTTGTAAACTACAATGTATCTCCAAGAACTAAATGCAATCATATTTCCCTGCA TGAGTGTCTCGGCACCAGAGGTAGATAGTTTCAGTATAATCTTGATCTAACAGAAGATATATACATGTTTGTCTCAGCAA TAGCAGCTTGATTATTCTTGTAATGAACCAGCAAGAGATTCAGTTGGGTCCTCAGTGACCTCTGCTTGCACACTTTCTCT GAACTATTTCTGTAGTGTTATCACTTTAACTTGAACTTTGGTTTCCTTGTAATTTGTTTTCTTGTCGATAACATTGTTAA CAGTTAACACAATTAAGAGGTGTGCCAATAATATGCAGGTGTGCCTAATTGCAATCAACTACCCATAAGGGACATCCAAC AAAATTAGAATCATAACCAATAGTCTGGCACAATGAACTTTAGTGTATCTTTATTTTCTATGTTTCAAGTAATTCAGGGT TGTTAATCACGCACTACAGCGGTGCAATTGC
CDS sequence (LotjaGi3g1v0122100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCCGCAGTCATCGACGCCGGTTCCAGCCTCCTCAAAGCCGGTTTCGCAATTCCCGATCAAACTCCCGCAATGAT AATTCCTACCCAGATGAAACGAATGGTTGATGATGGTTCAGTGAGTGATAATTCGTTGGCGGATGAGATTGCCGTTGATC CGATCGTGCGAGGGTACATTCGAGATTGGGATGCTGTTGAGGATTTGTTGCAATATGTTTTGTACACTGGCCTTGGGTGG GAATTGGGCAATGAAGGACAGATACTATTTACTGATCCACTTTGTACCCCAAAGGCTAATAAAGAACAGTTAGTGCAACT ATTGTTTGAAACATTCAACGTATCAGGGTTTTATGCCTCAGAACAAGCAGTGTTGTCACTATATGCTGTGGGACGTATCT CAGGCTGCACAGTTGATATTGGTTATGGAAAAATAGATATTGCTCCGGTAATTGAGGGTGCTGTCAACCACATTGCCTCG AGAAGATTTGAGTTTGGAGGTACTGATCTCACTAATTTTCTGGCACAAGAACTTGGCAAATCCAATCCGCTAGTGAATAT CAGCATGTCTGATGTTGAGAAAATAAAACAGCAATACTCATGTTGCGCTGAAGATGATTTAGCTTATCAGAAGACCCAAG ATTCTTGCCCTGCGGAGACACATACCCTTCCTGATGGACAGGTGATCACAATTGGAAGAGAAAGATATACTGTCGGTGAA GCTTTATTCCGTCCATCTCTATTGGGTATAGAGGCTCATGGCATTGTTGAGCAGCTTGTCCGTACTATTTCTAGTGTGTC ATCTGATAATCATCGGCAACTTCTGGAGAATACCGTGGTTTGTGGTGGCACTTCTTCAATGACTGGTTTTGAAGAGAGGT TTCAGAAGGAATCTTTCCTAAGTTCATCTGCTGTTCGACCTACCCTAGTCAAGCCTCCAGAATACATGCCAGAAAATTTA ACTAAGTATTCTGCTTGGGTGGGAGGTGCCATACTTGCCAAAGTAGTTTTTCCTCAAAACCAGCATGTAACTAAAGGGGA CTATGATGAAAATGGACCTTCCATTGTGCATAAGAAATGCTTCTGA
Protein sequence (LotjaGi3g1v0122100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAAVIDAGSSLLKAGFAIPDQTPAMIIPTQMKRMVDDGSVSDNSLADEIAVDPIVRGYIRDWDAVEDLLQYVLYTGLGW ELGNEGQILFTDPLCTPKANKEQLVQLLFETFNVSGFYASEQAVLSLYAVGRISGCTVDIGYGKIDIAPVIEGAVNHIAS RRFEFGGTDLTNFLAQELGKSNPLVNISMSDVEKIKQQYSCCAEDDLAYQKTQDSCPAETHTLPDGQVITIGRERYTVGE ALFRPSLLGIEAHGIVEQLVRTISSVSSDNHRQLLENTVVCGGTSSMTGFEERFQKESFLSSSAVRPTLVKPPEYMPENL TKYSAWVGGAILAKVVFPQNQHVTKGDYDENGPSIVHKKCF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 361 | 361 | 5.7E-70 | ||
| SUPERFAMILY | 2 | 138 | 137 | 1.52E-29 | ||
| Pfam | 2 | 184 | 183 | 4.1E-37 | ||
| PANTHER | 3 | 356 | 354 | 8.3E-123 | – | |
| PANTHER | 3 | 356 | 354 | 8.3E-123 | ||
| CDD | 4 | 166 | 163 | 4.46416E-14 | – | |
| Gene3D | 5 | 351 | 347 | 5.8E-98 | – | |
| PRINTS | 45 | 67 | 23 | 1.1E-14 | ||
| PRINTS | 100 | 113 | 14 | 1.1E-14 | ||
| Gene3D | 122 | 314 | 193 | 5.8E-98 | – | |
| PRINTS | 125 | 144 | 20 | 1.1E-14 | ||
| SUPERFAMILY | 131 | 361 | 231 | 7.52E-56 | ||
| Gene3D | 166 | 250 | 85 | 5.8E-98 | – | |
| Pfam | 192 | 361 | 170 | 1.9E-35 | ||
| PRINTS | 217 | 233 | 17 | 1.1E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0122100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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