Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0170400 |
Transcript ID | LotjaGi3g1v0170400.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ribonuclease H; TAIR: AT1G24090.1 RNase H family protein; TrEMBL-Plants: tr|I3SSU1|I3SSU1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0170400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:23359919..23364495) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTTCCTAATGTTTCAAAAAAAACTTTTTCCTAGGCCTTTTTGCTCTCCCTCAACTTTAATAAAAAATCTCATCCTCA AATCACTACCTTCTCTCCCTCTCCTTCTTCCTTTTCCCCCATTCTCATCCGCTTTCAAACCTCACATAGAGCTTCCAATT TTTTTCCTTTTCGACCTCACCCACTTACATCTCTGTGAGATTCATGCCAGAAACCGGCACCTAAGCCATTTTCACCGTCA CGCCGAACCTCACGCTATTCTTACTGGTTTCTCTCTCAGATCGTTGTTGTTTGTTCGCGTATACATCAGAGCATGAAATT TCCTCTCTCAATCTCTCATTCACGTTCCTACCTTTCTCAATGTCTGAAGCTTCTCAGCCGTAGCACTCTTCGCCACTCCG ATCATCGCAACCCGCAACCTCCCTCCGGCGACGAGACGACTCAGGTATCTTCATCTTGTGCTTAATTGATTTAGGGATTT AGATTTCTCAATTGATGTAGGGATTTAGATTTCTCATTCAATTTTTTGTTTAATTTCTTCCTTTTTATATCTTGACGGTG ACGACTCAGGTATCTTCTTGATGGCGTTTGTTCCCTAATTTTCATCTTCACAAGCACCCTGGCTGCCCTCATCGCCATCT CAGGTATTTCAGTTTTTTTGTTTTTCATATTTTCTTACGAGATTGATTAGTTGACTGATTAGTTGCCTCATTAGCTGCTT AAAAGTTTCAGCTTTTCAAACCTAATCATGTGAAATTATCCACCGTTAGTTTCTTAATCCTGTCAGGCTGCCACCATGGT CATGCGAAGGCTGAGCTTCTGAAAACCCTAATTTTGGAATGAAATTTGAACAAAAAATGAAATAGGAAATAATTTATTTA AATATTAGAGATTTTTGAAAATGAGAAATTATTCTCCTTTAATTTCTCCCCCATAAAGCAAACTTTCTCCCCTTTATTCT TCACTTAGTAATTAGTGTTTTTGAATTCGAATTTGTGCTTGACCGTAAATTATTCCCTGTATCAAGCCTTAGATTAGTGA ATTTATTATTTAAAAACACCACCAATACAGTAACAACCTCATATCCATTACCCTCAATTCAAATTTAAATTTTAAATAAG AAGGTAAGTGCTTCTCACTTTCCAGATTGTCATCGTCTCTCTCCAAGTTTCTAAGGAAAGCCTCTTCTCTCTTTTCTATC CGATTCATCTGCAGGTTAAGCATGCTCACAGTGAGTCATAAATTCAAAATTAATCATTCAAAATTAAAGTGAAGCTTTTG GCTTTATTTCAATTCAAATGATTTCTTTTGAATATTTTTTACAGGTGTTTTCTCTCAAACCACTATAAGATCAATTCACT TTAATAATTAAGATGCACATCTCTTGAAACTTACACGTTTTTTTATTTATTTGAACTGTACAACACATATCAATAATGTA GTGTTTGACTCCTTCCCTCTTTTTACTCCAGTTGTTCGACAAAAATATAAACCAAGTGTAATGGTCGTATCTGATTCTTC TGCAGGTTAAGCATGCTCGCAGTAAGTCATAAATTCTAAATTAGAGTGAAGCTTCTGAATTTGTTTTACAAGAGCTTTCT TTCAAACCACTATAAGATCAATTCACTTTAACAATTAAGATGCACATCTCTTGAAACTTACATGTTTTTTATTTATTTGA ACTGAATCAGTGTACAACACATATCAATAATGTACAGTGTTTGACCCCTTCCCTCCCTCCTCTGACTCTGGTTTTTACTC CATTTGTTCGACAAAAATATAAACCAAGGACAATGGTCGTATATGTTCACTTGATGCATGTCTATCCTGAAATGTTGGTT TTTTCTGTTACACATGTACAGGGTGTTCGGGCTGGCTCTTCAAGTTAGAAAGCTGAAAGAAATTATGAGCAGTGAAGCCA AGTAAGGAAAGAAGGATCTAAATTCTAAGGTAAACTTTTTTAACGTGACAGGAAAAACATTGGTAATGTTTGCATGTTGT TAACTCCATAGTTCATGGTAATGCTTTGTTAAGTGTTCTAATGGTGCTTATTTGTTCATACTAAAATATTGTTCATACTT ATATATTTAATTTTCAATGTATTTTTCATGCATGGAGCCAGTTACTTCTTATTTCTTTTGTGGATTAGGGTTTTTGGGTG GCGCATGTGTGAGATTGATGCCACTTGGAGGAGGTATGTGTTTTGGACCTCATATTAAGTTTTGATTTAATGTCATAATC GAGTATTTGTTCCTCTTTAAATACATCTTTTTTCACCATTAGTCTCAGGTTTGGAGATTTCTGACAGTTTGCGACTGTGC GTAGGTATGACACCTGAGAGGTCGTGGATAGTGATGGTTTTCTATGATACTTATTAAGGTTTGATATCTTCCTCTCAAGT ATTTTTGTTTATCATCTCTTATTTAGATGCAACTTATACAATGGTTTAAGTTTTTCAAAGACACACAATTCATGCTTCCT TGATGAAGACTATCATGTATAAATTTGAATTGAGAAAATTTTGTTGTGTCCTTTTTCCACTGGTATGTCGTTGAGCTTTT TTCTATATTTTCTTATATATGTCTATGTATTATTTTTATCCATAATCCATTCATTTCAACAAAGTATTTTTTTCTCCTCT AGGTTGTCTTTTTTCTCCTCTAGGTTATCCATTCACTTATCATATGTGACTATTGAAGAAGGCCAAGCTTCACATGGAGA AGCATTAACCAGGCAGCATGGCTACTGAAGAAAGAGGGCCTCTGGCGTATTGGAAGTGAGCAGTCTGTACACATTTGGGA GGACAACTGGCTGTTGGGACAAAATGGTTACAGAATATGGAGTCCAAGACCAGCAGATGGAGAAATCAAATTTGTGCAAC AGTTGATTCAAGAGAACCCCAGAAGATGGAATGTTCAGTGTCTAAGAAGGTACTTTCTCTCCAGCAAATTCCTCTTTTAG AGCTCTATCAGAGAGATAAGTTCATGTAGGGACCAGCAAAAAATGGAATTTATAGAGTGAAATCGGGGTACTACCACACC AAAAAAAGGGAGACAAACCAGCATGGAAGTGTTTCAAACTTGACAAGCAGCTCAGAATTGTACAAACAAGTGTGGAATCT TAAAATCATGCCTAGACAAGCACAGTTTGTTTGGAGAGTTATGAAAAAAACTCTTCCTGTTAAATCCAAACTCAGAAACA AAGGGGTTCCGTGCGACATGGTGTGCCCGAGGTGTAATGAAGAAGAAGAAGAAATTATAGATCATGCTCTCAGGGACTGC ATTTGGGTTAGAAGACTGTGGTTCACTTCCCCCTTGGGAATCAGGTTTGAGCAGTTTGGAACAATCTCCTTCATTTATTG GCTCACATATATTTTGTTAAAAAAACCTCAAGAAATTAAAGAACTTATTTATGTCATGACTCACCAAATCTGGTTTGCAA GGAATAAACTGTGCTTTGATGATAAAGAGATAGAATTGATTTGTGTGATTAGGAGAGCTGTATCTGGTTTTCAGGAATAC CAACAAGGTCTGTGACGTCAAGATATCAATGGAGGTGATATACAATTTCCCCTAAGGAACCAAAATGATCCTACTGCTGT TCCCTTGCAACCAAAATGGAAACCACCACCAGTGGGAGTCTATAAGCTGAATGTGGATGTGGCTGGTCCTGTTGACAACA AATGGGGTGCTGGTATAATTATTAGAGATGAACAGGGGAAGGTGTATGGCTGCTGCAACCAGATGTTTCTCATCAATACA GGATGCGGCAACTGCTAAGGCTTTGGGACTGCGATTTGCGGTGGAAACTGGTTTCAGAAATCTGGAAACTGAAATGGATT GCTTAGAGGTGGTGCATTCCTTTAACAACTCCAACAACAGAAGCTCTCATTCCTATCTTAGTGCTGTTTTGGATGATTGT AAACATTTAAAAACCTGTTTCCTCTTCTTTTGTTTAAATCATGTTAGTAGGAACCTTAACTCAGCTACTCATTTTCTAGC TAAATTCTCCTTATCTCATGTCAATCAAGAGTGGATAGAGGACACTCCCAGTTGTATTACTTCTATTGTGGCTATGGAAA GTTATCCTAGCACTGTTGAATGAAATCTTAAATTATCCTTCAAAAAAAATTCATATGTGACTATTTGAATCAAACATGTT CTTGATAACAGGAAAATGAAGTTGCTTTCTTCTCTTATTTTTTTAGGCATTATGTTTCTAAGTCTCGGTATTTTTTCTGC ATGATGCTTTCAATGTACAACATACATGGATTTGTGTTTGGGGATATTGATGAAAGATTTTGTACCAAGCTATCAACAAT ACTTGCTTCTATTAACAATGGAGCTAGCTGCATTTTAATGCCTTTGTTGCGAGAAGGCTACATTTTAGTCGAGAACGCAT TAGGGAGATTTTTTTTTTGAAACTGCATTAGAGAGATTTGTATCAGTTTAAATTTGTTATATTGTTGGTCTATCATACAC TATTGAACTGATTTTCTCTTTATAAGAAAAATATACTAATATACTTCTTTGGTTTGACTATTCTGAAATGAATAAAAAAG GACTATGAATCCCAATT
CDS sequence (LotjaGi3g1v0170400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAGGGGAAGGTGTATGGCTGCTGCAACCAGATGTTTCTCATCAATACAGGATGCGGCAACTGCTAAGGCTTTGGG ACTGCGATTTGCGGTGGAAACTGGTTTCAGAAATCTGGAAACTGAAATGGATTGCTTAGAGGTGGTGCATTCCTTTAACA ACTCCAACAACAGAAGCTCTCATTCCTATCTTAGTGCTGTTTTGGATGATTGTAAACATTTAAAAACCTGTTTCCTCTTC TTTTGTTTAAATCATGTTAGTAGGAACCTTAACTCAGCTACTCATTTTCTAGCTAAATTCTCCTTATCTCATGTCAATCA AGAGTGGATAGAGGACACTCCCAGTTGTATTACTTCTATTGTGGCTATGGAAAGTTATCCTAGCACTGTTGAATGA
Protein sequence (LotjaGi3g1v0170400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNRGRCMAAATRCFSSIQDAATAKALGLRFAVETGFRNLETEMDCLEVVHSFNNSNNRSSHSYLSAVLDDCKHLKTCFLF FCLNHVSRNLNSATHFLAKFSLSHVNQEWIEDTPSCITSIVAMESYPSTVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
PANTHER | 3 | 108 | 106 | 1.4E-17 | – | |
PANTHER | 3 | 108 | 106 | 1.4E-17 | – | |
Pfam | 4 | 100 | 97 | 1.6E-12 | ||
Gene3D | 15 | 103 | 89 | 1.8E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi3g1v0170400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…