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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0202500 |
| Transcript ID | LotjaGi3g1v0202500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Short-chain dehydrogenase/reductase; TAIR: AT3G51680.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9SCU0|SDR2A_ARATH Short-chain dehydrogenase reductase 2a; TrEMBL-Plants: tr|A0A1J7GKB9|A0A1J7GKB9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0202500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29558311..29559396) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTAACCGCCGAAGTAGAGAAACCCCTTCAAGTACTTCCCATTCTCTCAAGAGACACCACTTTCACATCTCTATCAAG AAGGTACTAATTTCAACACACAAATTCATTTTCCTGCATTTTTCACAAATCACACAGATGCAGCTCAAATGCTCGATCCA TGTTTTGACTCTGAAAGAAGTTTCATTGTTCTTTCTCTGATCTCTGTTTTCATTTTTCCAGGTTGGAAGGTAAAGTCGCC ATTGTAACTGGCGGGGCCAGAGGAATAGGTGAAGCAACGGTGAGAGTTTTCGTGAAGCATGGCGCAAAGGTAGTAATCGC CGATGTCGAGGACACACTCGGAACCATGCTTGCAGAGACATTAGCTCCTTCAGCTACTTACGTCCACTGCGATGTAAGCA TTGAAGAAGACATTGAAAATCTGGTGAGTTCGACAATCTCTCGCTATGGACAGTTAGACATCATGTTCAACAATGCCGGT GTTCTCGGGAACCAGTCCAAGAACAAGAGCATTGTGAATTTCGACCCTGAAGAGTTTGATAAAGTGATGCGCGTGAACGT GAAGGGAACGGCGCTTGGAATGAAGCACGCGGCGAGGGTGATGATTCCGAGGGGTGTTGGGTGTATAATCTCCACCGCGA GTGTGGCTGGGCTTATGGGTGGGCTTGGGCCGCACGCTTACACGGCCTCGAAGCATGCCATTGTTGGGCTCACGAAGAAC GTGTCTTGTGAGTTGGGTAGGTATGGGATTAGGGTGAATTGCATTTCTCCATTTGGGGTCGCCACGTCGATGCTTGTCAA CGCGTGGCGAACGAGCGGTGGTGGTGGTGGTGACGACGATAAATGTGGCGATGACGATGATGATAGCTTCAATTTTGGGA ATTTTGGGTTGCCACTTCAAGAGGAAGTGGAGAAAATGGAGGAGTTTGTGAGGGGGTTGGCAAACTTGAAAGGAACAACT TTAAAGGCTAAACATGTTGCTGAGGCCGCTCTTTATCTTGCTAGTGATGAATCCAAGTATGTTAGCGGTCATAATCTTGT TGTGGATGGTGGAGTCACCTCTTCAATAAATTGTGTTGGCTTGTAA
CDS sequence (LotjaGi3g1v0202500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAACCGCCGAAGTAGAGAAACCCCTTCAAGTACTTCCCATTCTCTCAAGAGACACCACTTTCACATCTCTATCAAG AAGGTTGGAAGGTAAAGTCGCCATTGTAACTGGCGGGGCCAGAGGAATAGGTGAAGCAACGGTGAGAGTTTTCGTGAAGC ATGGCGCAAAGGTAGTAATCGCCGATGTCGAGGACACACTCGGAACCATGCTTGCAGAGACATTAGCTCCTTCAGCTACT TACGTCCACTGCGATGTAAGCATTGAAGAAGACATTGAAAATCTGGTGAGTTCGACAATCTCTCGCTATGGACAGTTAGA CATCATGTTCAACAATGCCGGTGTTCTCGGGAACCAGTCCAAGAACAAGAGCATTGTGAATTTCGACCCTGAAGAGTTTG ATAAAGTGATGCGCGTGAACGTGAAGGGAACGGCGCTTGGAATGAAGCACGCGGCGAGGGTGATGATTCCGAGGGGTGTT GGGTGTATAATCTCCACCGCGAGTGTGGCTGGGCTTATGGGTGGGCTTGGGCCGCACGCTTACACGGCCTCGAAGCATGC CATTGTTGGGCTCACGAAGAACGTGTCTTGTGAGTTGGGTAGGTATGGGATTAGGGTGAATTGCATTTCTCCATTTGGGG TCGCCACGTCGATGCTTGTCAACGCGTGGCGAACGAGCGGTGATTTTGGGAATTTTGGGTTGCCACTTCAAGAGGAAGTG GAGAAAATGGAGGAGTTTGTGAGGGGGTTGGCAAACTTGAAAGGAACAACTTTAAAGGCTAAACATGTTGCTGAGGCCGC TCTTTATCTTGCTAGTGATGAATCCAAGTATGTTAGCGGTCATAATCTTGTTGTGGATGGTGGAGTCACCTCTTCAATAA ATTGTGTTGGCTTGTAA
Protein sequence (LotjaGi3g1v0202500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVTAEVEKPLQVLPILSRDTTFTSLSRRLEGKVAIVTGGARGIGEATVRVFVKHGAKVVIADVEDTLGTMLAETLAPSAT YVHCDVSIEEDIENLVSSTISRYGQLDIMFNNAGVLGNQSKNKSIVNFDPEEFDKVMRVNVKGTALGMKHAARVMIPRGV GCIISTASVAGLMGGLGPHAYTASKHAIVGLTKNVSCELGRYGIRVNCISPFGVATSMLVNAWRTSGDFGNFGLPLQEEV EKMEEFVRGLANLKGTTLKAKHVAEAALYLASDESKYVSGHNLVVDGGVTSSINCVGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 17 | 298 | 282 | 1.8E-155 | – | |
| PANTHER | 17 | 298 | 282 | 1.8E-155 | – | |
| Gene3D | 20 | 295 | 276 | 5.5E-78 | – | |
| CDD | 28 | 290 | 263 | 1.73125E-124 | – | |
| SUPERFAMILY | 30 | 290 | 261 | 8.62E-72 | ||
| PRINTS | 33 | 50 | 18 | 1.2E-35 | ||
| Pfam | 38 | 290 | 253 | 2.2E-60 | – | |
| PRINTS | 104 | 115 | 12 | 5.3E-10 | ||
| PRINTS | 104 | 115 | 12 | 1.2E-35 | ||
| PRINTS | 155 | 171 | 17 | 1.2E-35 | ||
| PRINTS | 161 | 169 | 9 | 5.3E-10 | ||
| PRINTS | 181 | 200 | 20 | 1.2E-35 | ||
| PRINTS | 181 | 200 | 20 | 5.3E-10 | ||
| PRINTS | 202 | 219 | 18 | 1.2E-35 | ||
| PRINTS | 253 | 273 | 21 | 1.2E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0202500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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