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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0230900 |
| Transcript ID | LotjaGi3g1v0230900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/Threonine kinase family protein; TAIR: AT2G37840.3 Protein kinase superfamily protein; Swiss-Prot: sp|F4IRW0|ATG1C_ARATH Serine/threonine-protein kinase ATG1c; TrEMBL-Plants: tr|A0A0R0KFQ7|A0A0R0KFQ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0230900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:36130769..36133509) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCAATCGTTGGTGTACCTACCAATAGCATATGCCAAATTGGAAGTTCAGGTAGTCAGGATTCTGCTCCTGGGACTTC ACATGGATCAATGGATATGGGTGATGAACAGCCATCAACTGACTGCATGACGAGGGTAAAGTCATTGCAACAGTGTGCTG CTGCCATCACGGAGTTAGTTAATGAAAAGGTACATTTTTCTTGCTATTTTCTGAAGCACGAACACTTCTCTTCATAGGAG TGTCCTGTGTCGGTCACCGACACGACACTGACACCAGTACCTCACGTGTTGGACACCTTTTTGTGTTGTCTGACATTTTT TTTGTCGGTTGGGACACGTCAAGCTGACACCTCTTGTTGGCTGGACACTTGTGGGACACTGATATTATTAATTCTTTAAA GTCAAAGAATAAAATATCTTTTATATTTTTAATTAGTATGTGAGAAATAGTTGAAAATGAGTTTGCATCACTGGGTGATA CTGGAATTATTCAAGTTACTAATATGTCATTTGATGAACCAGAGTCTATTCTTTTCAATGATGATGATCAAGAAAGATGC GAAAACTGTTGGATAGATTAGCTCTTTCTTTTTGAGACAGTGCTTATTTTGTAAAATGAGTATAACTTTTTCAAACTCAT TGGCATAGGGCATATGAATTTGTTTTATATTTGCCTTATAAATAAACTAACTTGTCTTGATTTTAAAAAGGTGAATATAT ATATATATATATATATCAGGTGTCCTACGTTTTGGATCTTAGCCATGTCAGAGTTAGTGACTGTAATATTATCTGTAAAA GTTTGCGGCCGAAATTCAGGGATGTGCATTTTAGAAGTTTACCAATTACATTCTGTTAAGCTAATCAGGACATTACGTGG TCCAGCATATTTCATATAATGCAGGCATTTTTTATTATTCAGTAGGTTAGCTAGGTATTTTAAATGGGCCTTTATGTATG ATTGAATGAATTTAACTTCTTGGTGAACTTTATGTAAACTTCCATAAATCTTGCAGTTTAAAAATTAGATAGTGATTAAT GTCACTTTTTGGTCCTTTACCCCTCCCCGGTTTGCTCAGAGAACATGCTATTTTATTGTTATTATTATTTGGTAAACAGT AAGTGCGTTTGGATTCCCTTTTGAAATTCTAAACCATAGTTGCAAAGTTACGAATGGTTTGCTTTTACCCAAATCATGAT GTGGGGCTTTTCAAATGGAAATCCAAATGTTGTACTAAAGCTGATGAGTTGTGCCTTTAGTATGCATTGTGCACTATCTA CTTGCTTATGTGGAACTTTTCCTTTGGGGGCAATTATTGAAACCCTATTTCCTGTTTACATCTACTTGAGGTATCTCATG CTGCTGTCTCTGGCATTGTGTAAAGTGGTTTTACTTGTATGAGCGAGAATTGAATTTGTCATTAGTGACATAAAGTTCAA TATCCTTCTGATTGTTCTATCTTTCTCTCTTGCCCCCTTTCCCCCTCCCCCCGAAATGAAAAAGATCACAGCAGGAAAGC AGCTAGAAGCGTTTTCTATTCAGCTTGTTATTCTTGCTATTTGGAAACAAGCACTTCACATATGCCATACACAGGCTGCC TCGGCCATGGAAGGAAGTCCAAACCAAGAAGCTTCAAGATACAGGAGGAGTACCAGCAAGAAGCATGGTAGTTCTGATTC AGAAGAGTGCCTTGATGGAAACACCCAAGGGCCAAAGGATATATTATCTAAAATTGAAAGTGAATTTCTGAGGGAATTTG AGCATGCTGAAGATCTTGCCAAGCCAATAGAGCCTGGTATGACTTTTTAATTTTGATTTATGAGCTGAAAGGCTTGTTGA CTTGCCATTTATTTCTTAAAATAAGATATCTTTTGCGTCAATGATTGAGTAATTATCTTCAGTGCGATTGAAATCTCAGT TCTTGTTTAAAAAATGTTTCCATGCTTGTTTTGTAAAGAATATTTTATTGCATTTGATGCCTAAAATTTGAAGTCTTGAG TTGATGTAGAATTCACAACATTGGATCTAATCTTTCGTCAAGAGTCATTATTCAAGATGGCCAAGAATTGAAGTCTTTGT TATCTTATGGATAATGGACTAATGGTACATATTTGTAATATATGGTCTCTGTAAAAAATGATACAAGTACATATTTGTCC TAATTGCAGGGAATACAGAGATGCCAGATGCAATGGAGACAATATTTCAAACTGCTCTTGCTTTTGGGAGGCATGGCGGT GTAAGTATTTCCTTCCGCTTTTTATTTCTTCCAATTTGAACAGGGTTTTAAAGTCTATCTTAAAATGCAATTCTAGATTC ATTAATTTTTTTTCCATGTAAGATTTTCTTTTGTGCATTAAATTTATTCAAGTGGCAAATAGGTTGGACTTGGTTAATTT CCTACACGAGTTTCGTATTTAAGGATGAACAAACATGATAATTTATTTTGTGATTCAAGTTGACGTTGTTTTGGCCATAT GCTTGGCAGGTAGAAGAACTCATGGGTGAAATGGAAAGTGCAGCTGCATTGTATTCAAAAGCTGTGCGTCTGTTAGTTTT CCTTCTAGTGGAAGGACCATCCCTGATTCTTAACCCTCCATTTTCACTGACAAACACAGACCGTTACAGGCTTCGGAATT ACATTGACATTCTTAATAACAGGCAAGATTATTCAAGGTCTCAGCGAATCGCTCTTCTGAAAGCAGATGATAGTCAAGGT ATCCTCAAGGAAAAGTTTTAG
CDS sequence (LotjaGi3g1v0230900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAATCGTTGGTGTACCTACCAATAGCATATGCCAAATTGGAAGTTCAGGTAGTCAGGATTCTGCTCCTGGGACTTC ACATGGATCAATGGATATGGGTGATGAACAGCCATCAACTGACTGCATGACGAGGGTAAAGTCATTGCAACAGTGTGCTG CTGCCATCACGGAGTTAGTTAATGAAAAGATCACAGCAGGAAAGCAGCTAGAAGCGTTTTCTATTCAGCTTGTTATTCTT GCTATTTGGAAACAAGCACTTCACATATGCCATACACAGGCTGCCTCGGCCATGGAAGGAAGTCCAAACCAAGAAGCTTC AAGATACAGGAGGAGTACCAGCAAGAAGCATGGTAGTTCTGATTCAGAAGAGTGCCTTGATGGAAACACCCAAGGGCCAA AGGATATATTATCTAAAATTGAAAGTGAATTTCTGAGGGAATTTGAGCATGCTGAAGATCTTGCCAAGCCAATAGAGCCT GGGAATACAGAGATGCCAGATGCAATGGAGACAATATTTCAAACTGCTCTTGCTTTTGGGAGGCATGGCGGTGTAGAAGA ACTCATGGGTGAAATGGAAAGTGCAGCTGCATTGTATTCAAAAGCTGTGCGTCTGTTAGTTTTCCTTCTAGTGGAAGGAC CATCCCTGATTCTTAACCCTCCATTTTCACTGACAAACACAGACCGTTACAGGCTTCGGAATTACATTGACATTCTTAAT AACAGGCAAGATTATTCAAGGTCTCAGCGAATCGCTCTTCTGAAAGCAGATGATAGTCAAGGTATCCTCAAGGAAAAGTT TTAG
Protein sequence (LotjaGi3g1v0230900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPIVGVPTNSICQIGSSGSQDSAPGTSHGSMDMGDEQPSTDCMTRVKSLQQCAAAITELVNEKITAGKQLEAFSIQLVIL AIWKQALHICHTQAASAMEGSPNQEASRYRRSTSKKHGSSDSEECLDGNTQGPKDILSKIESEFLREFEHAEDLAKPIEP GNTEMPDAMETIFQTALAFGRHGGVEELMGEMESAAALYSKAVRLLVFLLVEGPSLILNPPFSLTNTDRYRLRNYIDILN NRQDYSRSQRIALLKADDSQGILKEKF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 40 | 40 | - | – | |
| MobiDBLite | 9 | 27 | 19 | - | – | |
| PANTHER | 29 | 250 | 222 | 3.9E-89 | – | |
| PANTHER | 29 | 250 | 222 | 3.9E-89 | – | |
| MobiDBLite | 95 | 133 | 39 | - | – | |
| MobiDBLite | 109 | 123 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0230900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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