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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0257900 |
Transcript ID | LotjaGi3g1v0257900.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Zinc finger, B-box; TAIR: AT1G78600.1 light-regulated zinc finger protein 1; Swiss-Prot: sp|Q9SYM2|BBX22_ARATH B-box zinc finger protein 22; TrEMBL-Plants: tr|A0A072VAB5|A0A072VAB5_MEDTR B-box type zinc finger protein; Found in the gene: LotjaGi3g1v0257900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:44823339..44828247) extracted from Lotus japonicus Gifu genome v1.2.
CAGTCAAACACCACAACCATGCAACTTGGAAAAAACAAGATATTTGTTCTTTGTAATGTTTTTTGCTGGATTTTATTACA TTACAGTTCCATGAACAAAGCCAGCAAAGGCGGTCTCCTCTGCCACGACACTACCCACTAGCTGCCACGTGTACACCGAG CTTCGTGGCACCAAAATATCCTCCATTTTCCTTCCTTTCTTTCTTTCTTTCTTCCCCGCTTCTTAAACCCTCTCTTCAAT GCGCGTTAACCTGCTTCCTCTATATTCTATCTCTCTATCTTCTTCTTCTTCTTCTTCTCTCAATTTCCACCGCAAAATCA CTCTGAATTTGATCAAATTTTATAGACAAGAGGAACAATTTTGGAGATAAGCAAGGGATTTTGAAGAGGATGAAGATTCA GTGTAACGTGTGTGAAGGTGCGGAGGCGAAGGTTCTGTGCTGTGCTGATGAGGCAGCGCTGTGTTGGGATTGTGATGAGA AGGTTCATGCTGCTAATAAACTCGCTAGCAAGCACCAGAGAGTTCCTCTTTCTCTCTCTTCCTCTCATATGCCTAAATGT GATATTTGCCAGGTAATTTCTTTTTTCTGTTATTGCAGAATAGAGAGATTTTCTATTTGATTTTATAACTGCTAAATCCA TGGAAAAAGGAATATTGGGTATTATCAAATCAAAGAGTTGTTTTGGATTGTATCCACTTTTGTTGCTGATTTTGCAATAA GTTAGTTTTAGCTGTTGGCAAGTTTTGTAATGGCCTATTCCTATGTTTGGATTGATGGGAAGTGGTGGAATGTGATGAAA TTAAATGGAAGGGAATGTTAGTTATTATATTGGATTGTTTGGTTTTGTTAAATGAGGATGGAATGAAATGGAAGGGGATG GAAGCTATTTCATCGCGTATCGTTATTTACCGTAATACGGTAATACCATTAATTTTCTTACGCCCAAATTGGATGGAAGA GGATTGAGTGGAAACACTTGTGGCTACTAAAACTATGTCTTAGTCATAGGTTAGCTATGTTTGGATATCTGTTGACACGA GTGACTTTTGCACACACTTTAAGATAAATGTGAACAAGACTCTTATTTTGGATTGAGATGAAAGTCCGTTCACATTTCAC TCAAGTGTTATCTGAACACTCACTTAGTGTGAAAAATTAGTTTCATTTTTATTAGATAGATTTCTTAATCTATTTTTTGA TTTCATACTTAGTCTAAAAAATTAGTTTCGATTTTATTACATAGATTTCTATTTCCATTTTTTATGATTTCAGTTTTAAA TACAAAACTGCCATATTGTTTTTACCTTGTATCCTGTTCTCAAAGTTTTTTAAAGGAATCACTGTTTCCTTTTCAAAACA CTGAAAACAATGTGAAAGTTTTTTAGTTAAAATGGAAAACAAGAACTGAAAAAATAAATTGGTAATTGCAACTGGTCCTT ACATTTTGAGTTTTTACAATAAATTCCATTTTTTTCTATAGTTACTAAAAGAGGGCATTCATATTTCTCTATTTATATTT TTGAATTTTAATAATCACATCATTGATTCAATTGCGTGAAGGTGAAGTCTTTGAATGGTTATGGGGCATCTTAAATATAT CATACATCCTTGGAACTTACTTTAAATCTTAATAGATTAGGGGCAATAATATTAATTGGAATCATGTTGAACCCTAATTG TAATCTATACTTCTTCATTTTTGTGTCTAAACTAACAATAATGCACTTTTCTGATTCTCACATTTATTAATTACCTGTTT CAATCTCTCACCTGTGCTTCATGGAGATATTCATTTGCTTTCGTGTCTTCCTCTCTTCCACTTCCTCTCCTTCTCTTTGA GCATGTTTTCATATTTTAGATTTTGGGGAGGGGAAGGGAAGATGTTGGGAAGTTAAAGCATGACCTTGCTATGAGAAGGA GCTTACACATCTTAATAGTTGTTCAGACTTCAGACTTTTTCTTTGTTGGTGGTAACAATAATCTTCTGCGTGCTTCTTGT AACAAGTTAGCATGTGGAATGTGCTTGAGATATTCATTAATTGCTTTTTTATTTCTTTCACCATATTCAGAAGTCAATTC TTTACCTTGGATATGCTAGTCTCTAGTATTAGCCTACTTTGAAAAACCTGTTGCTTCCTTTCAGGAAATAGGAAAAGTTT GGTGTTTATATGGACTCAGAACCTTCTTAATTTGTTATTTGTCCTGATTTAGTTTAAATGAGTTAGAAATGTTTGTTATT TTGGATAAGCTTGTGGTGATGGTAGAGTCTGCTACTCATTACAGGAAGCATTTGGCTATTTTTTCTGTCTAGAGGATCGA GCTCTACTTTGCAGAAAATGTGATTTGTCGATACACACTGCAAATGCATATGTCTCTGGTCATCAAAGATTTCTACTCAC TGGTGTAAGAGTAGGCCTTGAAGCTACAGAACCTGGGGCTTCCTCAACTTCTTTGAAGTCAGATTCGGGAGAGAAAAATT CTGATACGAAGTCTTCTTCTGTCTCCAGAAAGGTTTCTGCAATGCTTCAGTCATCAGATTACAATGAAGTGTTACCCACT GAAGTTGGAGGATTTGGGGAGTTTCCACCAGCTAAGGCGTCTTATGGTGGTGGTTCTACAGCTGGAAACATCTCACAGTG GTTAATTGATGATTTTTTTGGGATTAATGAATTTAGTCAGAACTATAATTACATGGATGGATCATCACGGGTATGTCCAT AGTTGTTGCAGTATAACCCTCATAATTTATTGTCATCCAGATCTGGATGCAATGTTACCTGGTATCTCCTGTTCATTTGT TTTGTTATATCGTAGAGTTTCTATCTTTTGATGCTTTGTCTATTTACTGGGGTTCGTGTTCCAGAACACATATCTAACTT TCATCATGGACTAATTATCTTTATTATACAGTACATACCCGTTTACTCTCTCGCACACATACATGGGGGATGCATGCCCT CGCATACTAACTTTTGCACGTTCCCATGATAAACTGAATCTACACCAGGTGCCTATGCTCATTGCTGCCGAAGGGCTTAA CCTGTCACTTATTATACTTGAAAAATAACTGGACAAAAGGATTATTAGATAGGAAGTTGAGGGACCGTGATAGGGATGAC CCTGTATTTCAAGGGTTTATGCCCTGCTAACATGGTCACATGACTAAACAACTGAAAAACATAGATTTCATAAATATGCT GCAAATTTTGGTCAGGAAAAGGTGTTGTATTGACTACATTGCGGATGATAAATTTGACAGTTTGTGAAGAACTGTGGGGT ACATGATTGGATGATGAGCTATTGTTGCATCACTATCTATCAAAAACTGATATTTTCCCACATTAAGATTATTAAACTCA TTCAGTTGATTGTTCTCGCATTTTTTCGTGTATTTGTTTACTTTGTAAGGTATATAGACAAACTACACTATGTATACATT ATATCTGCATCTATGTTGTTGCCTAAATTAGTGACCAAACTGAGTGCTTTGACATTATAAACAATTGTTCATGACCTATC CATTCAAATTGTGCTTTGATATTGGTTAAAAGCTTTGTTATAGTCTTAGCTCTATGGTTGTAGGGTTCTGTGATTTTCTT TTTCACCTCTTGTTTATCGGATGAGTTTGTGCAGGCTGACAGTGGTAAGCTTGGGGATTCTGATTCTCCTTTTTTAAGAT CCGGTGAAGACGAAATGGAGGATGATGACTGCTTGGGACGTGTTCCAGATTCATCCTTGTCAGTTCCTCAGATTCCATCC CCACCTACAGCTTCTGGTTTACACTGGCCAAAAAACCCTCAATATTCATCTGATAGTGGCCTTTTTGTTCCTGACATATC TTTTTCTAGCATGCAACGGCCACAGAGTAGTAGTATTTTTTCAAGACCACGCAGGCATATTTAATTTGTTTCCTCTCATC CCTTCCCTAATAACCTTCAGACGGTTTTGCTTTTTTTATTTGTTATCTGGTTTGATGCTATTGATTAGCTAAGAATTTCA TCATGGATGTCTCTGTTTCTTCTTGGGAGTGAATTTCTAACTCCACTTATTGGGTGTGAAAGGCTTTCCAATTAAGTTTG GTCCTGCAGCACTCTTACTTCATTTCTAGAATCCACTGCAGATGCTGCATCTATTTATTTATCAGTATCTTGTTCAATAT GTGTAGGTTGTGTTAGTAGTTTGCTTCTTCACAATACTTAACAATGAGAGGGTTGTATTATAGATGATGACTTTTTCTTC CATTGATATTATTGAGGAAAAGTAGGAATGATTCAAATGCATTTTCCAGAAAGTTGTTGGACTTATTATCATTATTATTA TTATTAAAAATAACAGTTATGATTACTATTATTATTAAGAGTGATGAGAAAAAGCTCATAAATGAGTTGTGTGACATTTC TAAGGATTTGCCTTTGGAAAAAATAAATTGAGAAATTGTTTTGGGATTGGCAATAGAGGTTTATTCGTGACAAATCTAAC CAAATGATTGCCACTTGCCAGGATCTGTTGCTAGTTGTGTTACATTTTTGAAATGGGAATTTTGCTGTTTATAGTCATGA CTCGAGTGGGATTACTTCTTATTGGCGATACTTGTAGTCTGTACTAAAAATTTATGACGAATCTAAAGTTCACTTAATTT CTAAAATGAGGATTGTTATTTGGCATGATGCCAATAAACACACCTCAGACACCAACAGCTTTTTTTTTTATGTGAAAAAA AAAACTAGAGTGCTATAAATTAAAGTGAGATTAGCAGGAAGTTATCAGATTCAAGGGGTGGAGATGTATTTATATAGAAT ATATTGTTTGAATAAATTTTGTAAATGAATGTTTCAGTGAAGAGTTTGTTTAAGAGTATTGTTAATTTCTTGTAAAATTT TGAAATTTTTGTGTTAAAATAATACCCTT
CDS sequence (LotjaGi3g1v0257900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATTCAGTGTAACGTGTGTGAAGGTGCGGAGGCGAAGGTTCTGTGCTGTGCTGATGAGGCAGCGCTGTGTTGGGA TTGTGATGAGAAGGTTCATGCTGCTAATAAACTCGCTAGCAAGCACCAGAGAGTTCCTCTTTCTCTCTCTTCCTCTCATA TGCCTAAATGTGATATTTGCCAGGAAGCATTTGGCTATTTTTTCTGTCTAGAGGATCGAGCTCTACTTTGCAGAAAATGT GATTTGTCGATACACACTGCAAATGCATATGTCTCTGGTCATCAAAGATTTCTACTCACTGGTGTAAGAGTAGGCCTTGA AGCTACAGAACCTGGGGCTTCCTCAACTTCTTTGAAGTCAGATTCGGGAGAGAAAAATTCTGATACGAAGTCTTCTTCTG TCTCCAGAAAGGTTTCTGCAATGCTTCAGTCATCAGATTACAATGAAGTGTTACCCACTGAAGTTGGAGGATTTGGGGAG TTTCCACCAGCTAAGGCGTCTTATGGTGGTGGTTCTACAGCTGGAAACATCTCACAGTGGTTAATTGATGATTTTTTTGG GATTAATGAATTTAGTCAGAACTATAATTACATGGATGGATCATCACGGGCTGACAGTGGTAAGCTTGGGGATTCTGATT CTCCTTTTTTAAGATCCGGTGAAGACGAAATGGAGGATGATGACTGCTTGGGACGTGTTCCAGATTCATCCTTGTCAGTT CCTCAGATTCCATCCCCACCTACAGCTTCTGGTTTACACTGGCCAAAAAACCCTCAATATTCATCTGATAGTGGCCTTTT TGTTCCTGACATATCTTTTTCTAGCATGCAACGGCCACAGAGTAGTAGTATTTTTTCAAGACCACGCAGGCATATTTAA
Protein sequence (LotjaGi3g1v0257900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKIQCNVCEGAEAKVLCCADEAALCWDCDEKVHAANKLASKHQRVPLSLSSSHMPKCDICQEAFGYFFCLEDRALLCRKC DLSIHTANAYVSGHQRFLLTGVRVGLEATEPGASSTSLKSDSGEKNSDTKSSSVSRKVSAMLQSSDYNEVLPTEVGGFGE FPPAKASYGGGSTAGNISQWLIDDFFGINEFSQNYNYMDGSSRADSGKLGDSDSPFLRSGEDEMEDDDCLGRVPDSSLSV PQIPSPPTASGLHWPKNPQYSSDSGLFVPDISFSSMQRPQSSSIFSRPRRHI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 279 | 279 | 7.9E-123 | – | |
Gene3D | 1 | 92 | 92 | 1.0E-7 | – | |
ProSiteProfiles | 1 | 47 | 47 | 10.665 | ||
PANTHER | 1 | 279 | 279 | 7.9E-123 | – | |
CDD | 3 | 47 | 45 | 1.73795E-9 | ||
SMART | 4 | 47 | 44 | 2.0E-11 | ||
Pfam | 4 | 47 | 44 | 1.7E-5 | ||
SMART | 52 | 99 | 48 | 3.0E-15 | ||
ProSiteProfiles | 52 | 99 | 48 | 9.186 | ||
Pfam | 54 | 95 | 42 | 3.8E-7 | ||
CDD | 55 | 99 | 45 | 4.33142E-10 | ||
MobiDBLite | 111 | 137 | 27 | - | – | |
MobiDBLite | 201 | 257 | 57 | - | – | |
MobiDBLite | 238 | 257 | 20 | - | – | |
MobiDBLite | 271 | 286 | 16 | - | – | |
MobiDBLite | 271 | 292 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0257900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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