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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0263300 |
| Transcript ID | LotjaGi3g1v0263300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein FRIGIDA; TAIR: AT5G48385.1 FRIGIDA-like protein; Swiss-Prot: sp|Q67ZB3|FRL3_ARATH FRIGIDA-like protein 3; TrEMBL-Plants: tr|A0A0L9VTU6|A0A0L9VTU6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0263300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:48978419..48984867) extracted from Lotus japonicus Gifu genome v1.2.
CGAAACTCTCCAAATGACAAATATTGGTTTTTGGTCCAAAAATATTTTTCAAGTACTAAAACATATTTGTTATATTTGTA GGGACCAAAAACATATTTGAGCATAAAAAATTATACTCGAGAAGAAACAGAGTCAGCTTTGTGTCTCTCTTTTGACTAAT TAAACAAACACCACACACTTTCCCTTCTTTCTCTTCTTCTCGCCGTTCTCTCTCTCTCTCTCTCTCTCTCTGAGGGTTGC ACTGAGAAAATGGATTGAGATTTTTTCTCTCCCTCTTTTCCTCAACCTCTTCTATATTTTCTTCCGGATCAATCAGGTAA CTCTTATTTTCTCTTCCTCAGTTTTTTTATTTACATTTTTAGTATTTTTTTTTTGCTATGATTTTGTTTTCTTGCTGTCG GTTTAGATCGGCTATGATTTCTCGTGTGGAACGAGAATCTGCTTGTGTTGTTCATCATGTGATTTTCTATTGAAGAGATT TCGTAGACATTTTGCTTGAAATCTACTCTTCTTGTTACTTCACTGCAGGGACCTTTGTGATTTTTATTTTTATTTTCTGC TCAAAATTCATCACTCTGCTAATTTTTAAAGTTTTTCCTTTATGTTGTAATATTTTTCTTTAAATTGTTATAATTGATGA GTAGAAATGGTGTGCTGATTTTGTTCCTGTTATTTTATTAATTTGATATTTTTATTGTGGCTCAAAAGGTTTGGATCCGA ACATATTCTTTGGTAAGAACTTCAGCAATTCTTCTTGTCTTTGTTTTGAAGCTTAAAGACTTCAATTTTTGGTTGTTTTG GTGCAAGCTTAAGTGACTAATCAAGCTAACCAGTTGAAATTGGACTCTTATTTTATTTTCTGTGAATTTTGTGTGCAATA TAAATCGTTCCTTTTGCATCGTTAATGTCAAAGGAAATACGGAGAAATGCACTTCACACACTAACTTTTGGTTCATTGTC TGATTGGTAGATTTCACTCCAAAATAGAAAGATATAAACCTCAATCATCACTGAACTCTACCAGAAAGTATCATCATACT TCTGGTAGTTACAAATAGAATATTGCAAAATCACAGTAGGTTTTGCTCTCAACCTTTATCTTAATAGTGATGTCTGCAAT TGCAATCTTTTATCTGTTAATTGCTATCATTTTTTTCGCTGCATTTGGACAGCACAAAGATGGTTTTTCTCATGTCCAAA AAACAAGTATTTGTAATTCCTGATAAATGTATAGTTCATAGTTCATACTGCTGCACATCGTCCATGCCTTCATAAGTTGA AATTTGATATTTTTCATCATTTTATCTTTGTCAGCTTCTTTGCTATGGAAGACAAAGATTCAGTTGCTACGCTGATGGAC TCTACAACTTCTAAGATACAACAGCTGCAAAAGGCATTTGCTGAGCTTGAAAGCTATCGAGCTGTTACTCTTAACTTGAA ATGGAAAGAACTAGAGGAACATTTTCATGGGCTTGAGAAATCCTTGAAGAGGCGCTTTCATGAATTGGAAGACCAAGAAA AAGAATTCGAAAGCAAAACAAGGAAATCTCGTGAACTGTTGGAGAAGCGGGAAGCAGCTGTGTTTTCTAAGGAGCAGGTC TCGTTGCAGAGGCTTCAAGAGAAAAGGGATGCTGCTGCATTTGCTATTGTAAATGCTCGAGAAAAGCACCGGAAGGTTTC ATCAAAGGATTTGGCTTTTGTCTCCAGTGGTGGTCAAGGGAGACAGGGTTTAGAGGAGACACCAGTGGATGCTGGGTCCC TTTTGGCTGAAGGTAACTTGGAAGATGTGAAACTTTCTCCTGAAAATGGAAGTGTTGAGTTGGTGTCTTATCCAGAGTTG GTAAAACTATGTAAAGAAATGAATGCTGCTGGACTTCACAAATTCATATCTGATAACCGTAAGAACCTTGCTGCTGTAAG GGATGAAATTCCACATGCATTGCGAGCTGCTCCTAATGCTGCCCGTCTAGTTTTAGATTCATTGGAAGGATTTTACTGTA TGGAAGTGTCAAGTCAGGATATTAAAAAGGATGCTAATTTATTGGGTCTTCGCCGAACCTGCATTATGCTGATGGAATGT CTAAGTGATTTCCTGAACAATTCAGACTGTGCTTCTAATGTAATTTCAGAAGATATCAAAGACAGGGCAAAGTCAGTTGC TGAAGAGTGGAAACCTAGATTGGATGCTCTTGACATGGATGCTAGCCATGGGAACTCATTGGAGGCTCATGCATTTTTGC AACTTCTGGCCAGTTTTGGTATTGCCTCTGGTTTTGATGAACAAGAGTTGTCCAAGCTGATTCCAGTGGTGTCTCGGCGT CGCCAAACTGCTGATTTATGCCGTTGCCTTGGTTTGACAGAGAAGATGCCTGGTGTGTGTTTTTTCATTTATAATATTTA ATACGGATCAAAACCTTATCAAAACCATCTGAGTTTTTAATGAATGTTGAACTAAATTTAATGCAACGAAAAGATGAAGT TGGTTTTATTATTCTGTTTACTCTATTCACAACTTTTTCATCTAATTACCTCATGTTTAGTTTTTCTTTAGTTTTTTATT TCAATAACAAAAAGTTGTTTCTTTAGTTTTCTTTTTGTGATTAATATAAGTTGACGTGAAAGTATCTGGTCCTGCCAAAA CTTGCCATATTATGAACATATTTTTTGCAAGTCCACTTTAGGTTATTAATTTTTGGTATTTTTCCAATCTTCATAGATGT CCTGCTTGGTGTTTCTTGTTAAATTATTGAAAGGAACAGCTAAAGGAAGCCTGAATTGAGATTAGTCGATGACCCTTTAA TTTTCCTTCGAACTATTGAAGACAATTGAATGGAATGCATCAATATGCTAAGATGCTGTGTGAAAACCAATGATGGACAT TATCAAATATGATAGCACCTGTTTATTATTATTATTATTATTATTATACGGTTAGAGTAGAATTTTTTTGGCTTTCGCAT CCTAACATATAACAAAGTAGTATTGCTTGACTTTTTAATGAGAACCCAAAAAGTTTCTTGAAAGCACCCCTTATGACTTT TAACATGCAAGTTTCATGCATTGTTCTAGCATCTCTATCAATTATAGGATGAAGCGACAAATCTATTGCAGCTGTTTTCT TAATGATTCGTTTTACATTTTGGATGTACAGGTGTAATAGAGGTTTTGGTAAACAGTGGGCGGCAACTTGATGCTGTTAA CTTGGCCTTTTCATTTGATCTTACAGAACAGTTTTGTCCTGTTTCCTTACTGAAGTCTTATTTGAAGGACGCCAGAAAAG CTTCCTCTCCTGTCAAAAGTGTTAACTCATCCCCCACTGCACAGGTGTGTTGTTGAATCTCTGCTATATTAAGTTATTAT TTCCTCCATTGTATTTGTTTAATGATTTGAACTAATGATCTGAAATATTGTCATATTCGTTCGTCTGTCCACTTCTAATT AAGGTTTCCTAGAATTCTTTTTGCCATCATTAAATATTGAGCTTAGTAGTTGTGGATGAATGGTTGCTGTAGTAGCGACT AGTTGTGTGGTCAGATCATGTGTTAACATTATTTGAATTAGCTACAAAAGATCTTACCCTCGTGTATGCATTTTATTGGT GCTATTTGGAGTTTGGACCAGTCAGGTTCTGCTGGTAGAATAGGTGAGAATTGACCGGTTTGTCAAATTAATTTGAACTT TCATAAAACTTGCACATTACTTGATTTTCCTGCCAGAGTGCTGTGTTACTGGTTGTGGACTTGTGGTTCAGACTATTTCT GATTTTACGTATAGGTTTCTTCAGCTTCATCTATAGCAAATTAGCAATGTATGTTATCAGTGAGGGCAGAAAGATAAGAG TGAAAGCCACACTTCCCTGAATATGAATAATCTGGAATGCATTTGGCAAAATTTGATCTTTTTGTTAAGGGAAAAGTTTC GTAAGATTTCAGGGAAATTCAGAACTGTTCACAAGCTTAGAGGCATTTGGGGATACTATGCTAGTCTCCCTATTTTGCTT TTAGGTTCTGATCCTCTTTATTTTTGTCCCATAATGGGTGACCACTTCTAAGTTCTAACTTCAATACCTACATTTCTTTT GTACATAAATGAGGACATGTCACATAATTGGGCTAGCGTGATCAGATAATAGAAATGAACTGTTAAAAGTCCAATTTTGA AATTCACCAAATAGGATACAGTGAGTTCATAGGACTTCTGTTGCACTTTGTCATAATTGCTTACCGCCTTATTGCTATTT TGCTAGAACATATAAAGAGCGTTTGGTAGCGCTTATTTAAACATATCTTATAGCATAAAAGCTTATGCAGGTGTATGGTT AAGCTTATGAAAATAGCCTGCGACCTAACTTTAAGTTATTTTCAGCTTATTTCGATAAGCTTATCTGATTAGCTTATGAA TAAGTACTTATACAGTTATACTTACATACAAGCTCTTTTGAACTTATTTCCATAATCATCTCAAATAAGTGCTTGTGGTA CGTGCTCATTGGCTTAAGCGCTTAATTAAGATCTTTACCTAAATGCACCCATACTATGTAAAATTGTGGAGCTTATCATA TAAAACAAATAGTTTCTGATTAGAGTGAGAACTGTCTTGAAAATGTAGTTTGCCTGTAGGTAAAACTGATGAGAAGGAAA GCCTACACTTGTTTGTTAGTTTGGAAAAAAATTGATAAAGATGATGGGGATCCTCCTATTATAGATGGAAATTGTGCTTA ATTCGATGGAGCAGCAGTTTGCATAGTTTAGGTTGAAAAGCACTTTGTTGCAAGACTCTAGTGGAAGTATTAGTTTAGTC TATGTGAACTTGATTCTAGAGCTTCAGTATTTGATGTTTAGGACTTCAGGACTGTGCTTGTTGAGAAAGCTCTTGAAGAT TCTTTAATTTCTTAGGTGTTCAGAGCTTTTAGTTTGCTCTGCAGCTTAAGGGTAGTCAATGATTTTGTTTTAAGTGGGTG TATTTTGACATGCCACTTGACTATACAAACATTGAATTTATGTAAGTCTGAGATTCTATTGCTTGCTTAGTAAATTATTC TAGCAATTTATAATATTTTCTTGCTGGATGTTTGAACAATGTTCATCTTCAACCTTACGGTGGCTTTCTATTCCCTGATA TCAGTTTCTTATTTATATGATTGAAGATGCCTTCAATTCAATGAATAGAATGTTTGGGTCGACTTTTCTTTAATCAATTC CAAAACTCCGTAGCTACTCACAGAAGCTTCTCCCCAGATCTGATTCTGTCTTTAGAATTAATTGTAAAAGAGTTTCCAAA CATGCATGAAATTTTTTGTTTGATTCTTTTTTGGTAATCTACTGTATCTTTCTGTTTTTATATTTATTGTGTCTGGTTGT CTCAGATTGAGGTCAATGAACGAGAGCTGATTGCTCTGAAGGGTGTAATCAAGTGCATTGAAGAACATAAGCTTGAGGAG CAGTATCCTGTGGATCATCTCGTGAAGCGAGTGGCTCAACTAGAGAAGGCCAAAGCTGAAAAAAAGAGGGAAACTGAAGC AACAAAGCCTCAGCCCAAGAGACCCCGAGCTAATGGCATTGTGGGATATGCTCCTCGTTTCTCTAACATTCCTTCTGATA ACAAAAGTTCATATGCTAGAGTTGCTGACAGGTACCCGCCACAATATGTGTATGACCGACCATACATGTACCCAGCACCC GCCGACAATCATTGCCCTCCTCCTCTCTTTGGCACGGCTACCTATAACATCTCTCCTACTCATCATGGAAACTACTTTGG AAATGGCTATCAGTACCAAGCTACATATCTTCACTAGTTATATAGCTGAGATGTGAACATGATGATCCTTCCTTTCGCTT AATATCTAGTCTTAACCTTTTAAGATATTGTTATGTTGTTGTACTTTTTCAATTCTAGTCATCATTAAGAATCACTGAAA GAGGTAAACTAAAATGTCATGTTATAATTTAACTCTTGAATTAGAAGATATTCTGATCCTCTAATGTGTTAACTATGTTC TCGTTTTGTACAAACTTACCTTGATGCCTTTGTAGTATATTTTTCTTGTCTCTGATCTGTGCATTTCTTATATATTTGAT TTGATACTACTGTTGAGATATGTGGACTGTGGCTATACGAAGTGGATGAAAAGGCTGAGAACGTTTCTTCTCTTCTCCAA CTATTAGCAACCGAGTTTTGATTCATTCACCTCATCTTTTTCATCCATCTCATTTCCACTAACTTTTTTTCTTTCTATTT CTTAATTTTCTATCACATTACCTATCATATCTCTCATTTTTTCTTTTCTTCCTTTCTCTCATAAGGTGGAGGTATGAGAG GAGTGTCAGCCAAAACTTAGTCTTTCCCTTTGGATAATTAGATCATCAAAATAATATTCTATTGAGGGGTGGTATGATAT TTTCTTTTTCTTTTTGTTCAATTTGCCATGGCCTTTCCCAGAATTTTTT
CDS sequence (LotjaGi3g1v0263300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGACAAAGATTCAGTTGCTACGCTGATGGACTCTACAACTTCTAAGATACAACAGCTGCAAAAGGCATTTGCTGA GCTTGAAAGCTATCGAGCTGTTACTCTTAACTTGAAATGGAAAGAACTAGAGGAACATTTTCATGGGCTTGAGAAATCCT TGAAGAGGCGCTTTCATGAATTGGAAGACCAAGAAAAAGAATTCGAAAGCAAAACAAGGAAATCTCGTGAACTGTTGGAG AAGCGGGAAGCAGCTGTGTTTTCTAAGGAGCAGGTCTCGTTGCAGAGGCTTCAAGAGAAAAGGGATGCTGCTGCATTTGC TATTGTAAATGCTCGAGAAAAGCACCGGAAGGTTTCATCAAAGGATTTGGCTTTTGTCTCCAGTGGTGGTCAAGGGAGAC AGGGTTTAGAGGAGACACCAGTGGATGCTGGGTCCCTTTTGGCTGAAGGTAACTTGGAAGATGTGAAACTTTCTCCTGAA AATGGAAGTGTTGAGTTGGTGTCTTATCCAGAGTTGGTAAAACTATGTAAAGAAATGAATGCTGCTGGACTTCACAAATT CATATCTGATAACCGTAAGAACCTTGCTGCTGTAAGGGATGAAATTCCACATGCATTGCGAGCTGCTCCTAATGCTGCCC GTCTAGTTTTAGATTCATTGGAAGGATTTTACTGTATGGAAGTGTCAAGTCAGGATATTAAAAAGGATGCTAATTTATTG GGTCTTCGCCGAACCTGCATTATGCTGATGGAATGTCTAAGTGATTTCCTGAACAATTCAGACTGTGCTTCTAATGTAAT TTCAGAAGATATCAAAGACAGGGCAAAGTCAGTTGCTGAAGAGTGGAAACCTAGATTGGATGCTCTTGACATGGATGCTA GCCATGGGAACTCATTGGAGGCTCATGCATTTTTGCAACTTCTGGCCAGTTTTGGTATTGCCTCTGGTTTTGATGAACAA GAGTTGTCCAAGCTGATTCCAGTGGTGTCTCGGCGTCGCCAAACTGCTGATTTATGCCGTTGCCTTGGTTTGACAGAGAA GATGCCTGGTGTAATAGAGGTTTTGGTAAACAGTGGGCGGCAACTTGATGCTGTTAACTTGGCCTTTTCATTTGATCTTA CAGAACAGTTTTGTCCTGTTTCCTTACTGAAGTCTTATTTGAAGGACGCCAGAAAAGCTTCCTCTCCTGTCAAAAGTGTT AACTCATCCCCCACTGCACAGATTGAGGTCAATGAACGAGAGCTGATTGCTCTGAAGGGTGTAATCAAGTGCATTGAAGA ACATAAGCTTGAGGAGCAGTATCCTGTGGATCATCTCGTGAAGCGAGTGGCTCAACTAGAGAAGGCCAAAGCTGAAAAAA AGAGGGAAACTGAAGCAACAAAGCCTCAGCCCAAGAGACCCCGAGCTAATGGCATTGTGGGATATGCTCCTCGTTTCTCT AACATTCCTTCTGATAACAAAAGTTCATATGCTAGAGTTGCTGACAGGTACCCGCCACAATATGTGTATGACCGACCATA CATGTACCCAGCACCCGCCGACAATCATTGCCCTCCTCCTCTCTTTGGCACGGCTACCTATAACATCTCTCCTACTCATC ATGGAAACTACTTTGGAAATGGCTATCAGTACCAAGCTACATATCTTCACTAG
Protein sequence (LotjaGi3g1v0263300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDKDSVATLMDSTTSKIQQLQKAFAELESYRAVTLNLKWKELEEHFHGLEKSLKRRFHELEDQEKEFESKTRKSRELLE KREAAVFSKEQVSLQRLQEKRDAAAFAIVNAREKHRKVSSKDLAFVSSGGQGRQGLEETPVDAGSLLAEGNLEDVKLSPE NGSVELVSYPELVKLCKEMNAAGLHKFISDNRKNLAAVRDEIPHALRAAPNAARLVLDSLEGFYCMEVSSQDIKKDANLL GLRRTCIMLMECLSDFLNNSDCASNVISEDIKDRAKSVAEEWKPRLDALDMDASHGNSLEAHAFLQLLASFGIASGFDEQ ELSKLIPVVSRRRQTADLCRCLGLTEKMPGVIEVLVNSGRQLDAVNLAFSFDLTEQFCPVSLLKSYLKDARKASSPVKSV NSSPTAQIEVNERELIALKGVIKCIEEHKLEEQYPVDHLVKRVAQLEKAKAEKKRETEATKPQPKRPRANGIVGYAPRFS NIPSDNKSSYARVADRYPPQYVYDRPYMYPAPADNHCPPPLFGTATYNISPTHHGNYFGNGYQYQATYLH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 549 | 549 | 0.0 | – | |
| PANTHER | 1 | 549 | 549 | 0.0 | – | |
| Coils | 51 | 81 | 31 | - | – | |
| Coils | 94 | 114 | 21 | - | – | |
| Pfam | 168 | 457 | 290 | 2.0E-109 | ||
| Coils | 436 | 456 | 21 | - | – | |
| MobiDBLite | 450 | 477 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0263300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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