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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0280100 |
| Transcript ID | LotjaGi3g1v0280100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Septation ring formation regulator EzrA; TAIR: AT2G28690.1 TOX high mobility group box protein, putative (DUF1635); Swiss-Prot: sp|Q7S154|MED14_NEUCR Mediator of RNA polymerase II transcription subunit 14; TrEMBL-Plants: tr|G7IHL2|G7IHL2_MEDTR DUF1635 family protein; Found in the gene: LotjaGi3g1v0280100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:56001689..56003916) extracted from Lotus japonicus Gifu genome v1.2.
ATCAGAAATTTTTGGTATTTTCAGATCATATCAATCAGTCCGTATTTGCATGGATGTTTTAGGCATTTCTTGATTTTAAT TGATATGGTTAATTTTTATCTCAATCTTGGTGAGAAACTCTGAGTACCCCATTTGGCCATTTCTTTGTCTTGTCTCATTC TCACTTTTTCTCCCTATAAATAAGAGTTAAGACCCTATCCTTTTTGCTTCCCATTCTTGTCTTTTTCTTTACACAAAAGA TCATGGAAGATCAACTGGGTTCCATATGCGATCTTCATGAGGTGGGTATTGCATACTCTTACTTGTTCATCTACATGTGG TGAATCTTGTTGCATACATGTTTTTTCTCTGCTTTTGTTTCATTGCTTACTTCTCTATCCATTTCTTTTACTCTTTACTT GTTCATTTCTCTGTTTTTGTTTTCTCTCATCTTGCATATAAGTTCTTGTTCTTCCAAGTCTTCACTTGATTAAGAATTGA ATATACTTTCTTCTCCCTCTTCCGTCTGTTCTTATTGTTGCGCTCAGATACAGAGTTCAAATACAGTTAGTTTCAGTGTT CAACAAAAAAAAAATGAGTAGTCATTTTTGCCAGAAGGTTATGTCACATAAAAGTTTTCATTTTACTCGATAAGTGGATT TTGCAGCGGTTAAAAGTGTTTGTTTGTTCTGTAAGAACGAGAGTTCAATCCTTATAAGTCTCACTCTTTACAACATCTTA GGCCTTTACCACACCCATATGTATCGAAACAGATTTACTTCATACTTGTTTTTCAAGTAAAAAAAAGTTGTCATTTTTGT TTTCCAAAACTTTCCTTTTTTTTCTTTCATCTATTTTGTACAAGTATCTTTATCAAATACAACTATATTATTAATTGATC ACTTTTCTTCTTAAAGAGGAAAGAATTTATCTTTGACCCCATTTTCAATTATTTGCTTTCATCATTAATTGCTCAACATT CATTTTATTTTTTTCAAGAAAAGCAAGGCCGGTGTCTACTCTCACTTTTCATGTCCAAAAGTTTGTTCTTTGTTTCCACT CACCAAACTTGTCCCTTTCTTTTATTTATTTGATCTTTGCATGAAACATGCTTGAGAAAGTGATTCCTTGACTTTCTCTA TGACACCATTTTCTCAAACAAAGCTTTTGCAGGGCTATGAGCAATTGAGGCAAAAGCTCTTTGACACAATGCTCGAACTC GAAACCATGAGGAACGTGAAAGCAGAACTCTCCAAACTGCTGCAAATAGCTTACCAAGAGAGGGATCAAGCAAGAGAACA ACTTCATAGCCTCGCGAAAAAGCTCGTTCCCGCCAACTCAAACGCGCTTTTAGAGAATCTTCCGGAGTTTCCACCCGCGA TCAAAGCGAACTCAAGCTTCACAAAATCAAACAGCCCCTCAAACATCTCATCATCCCCTGTGACTCCTCTGTTGCAGCCA GTTTCTCCTTCTCCCGAGTTTTCAAACGTGAATGTGAATGTTGTTGACAATCACTACAACTTTGGTTTCCAGAAGCCTGC AACAATTGATTTTGAAAGTTCTGTGATTGATTACCTTGCAAAGGGAAAGGTGTTGCCTCAGAAGGGAAAGCTAGTTGAGG CTGTGAGAGATGCTGGTTCTCTGCTTGAGACTCTGCTTGTGGCTGGGCCACTTCCAAAGTGGCGAAATCCACCTCCATTG ACTTCCCTCAAGATTCCTCCTCTTAATATCAAGGAATATGATTCTCTTACTCCTGCGAGCAAGCTCAACTCCTTTGGAAA TTGGTGGGATTCGGCTCAGAAACCAACGTTTCTTCCATCCTCTCATTCTTCAGAACCTCTACCAATGCTTAACTTTGCAG GCAGCTCCTTTGGCTCCTGGAACAAACAATTGCAGATGACATCAAAAGCTAGTGTTGCAAGGAATCAGCATAGACTTCAA TATTGATGAAAAATAACCTTACTTATCCTTGCCTTTTTACATTTTCTTTCTAGAAAATTTGATGTAAATGGAGTTAGAAT GATTGGTGTAGATGGCTCCATACCCTGGTTTTGATCAACGGGTAGAGGTGAACTTTTCGATTTTAGCGGCGAAGTAGTTC TTTTTCTATATTTATGGAAGTGCATGTTTACAATTTTCATAATCCATTCTAAGGTTGAGCTCACATTTTCGATTTTAGTT GCAAAGTATTTATTTGTCTCTGAATGCATGATTACAAATTCTAAATTCAATTCTGTGGAGAACAAAGG
CDS sequence (LotjaGi3g1v0280100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACACCATTTTCTCAAACAAAGCTTTTGCAGGGCTATGAGCAATTGAGGCAAAAGCTCTTTGACACAATGCTCGAACT CGAAACCATGAGGAACGTGAAAGCAGAACTCTCCAAACTGCTGCAAATAGCTTACCAAGAGAGGGATCAAGCAAGAGAAC AACTTCATAGCCTCGCGAAAAAGCTCGTTCCCGCCAACTCAAACGCGCTTTTAGAGAATCTTCCGGAGTTTCCACCCGCG ATCAAAGCGAACTCAAGCTTCACAAAATCAAACAGCCCCTCAAACATCTCATCATCCCCTGTGACTCCTCTGTTGCAGCC AGTTTCTCCTTCTCCCGAGTTTTCAAACGTGAATGTGAATGTTGTTGACAATCACTACAACTTTGGTTTCCAGAAGCCTG CAACAATTGATTTTGAAAGTTCTGTGATTGATTACCTTGCAAAGGGAAAGGTGTTGCCTCAGAAGGGAAAGCTAGTTGAG GCTGTGAGAGATGCTGGTTCTCTGCTTGAGACTCTGCTTGTGGCTGGGCCACTTCCAAAGTGGCGAAATCCACCTCCATT GACTTCCCTCAAGATTCCTCCTCTTAATATCAAGGAATATGATTCTCTTACTCCTGCGAGCAAGCTCAACTCCTTTGGAA ATTGGTGGGATTCGGCTCAGAAACCAACGTTTCTTCCATCCTCTCATTCTTCAGAACCTCTACCAATGCTTAACTTTGCA GGCAGCTCCTTTGGCTCCTGGAACAAACAATTGCAGATGACATCAAAAGCTAGTGTTGCAAGGAATCAGCATAGACTTCA ATATTGA
Protein sequence (LotjaGi3g1v0280100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTPFSQTKLLQGYEQLRQKLFDTMLELETMRNVKAELSKLLQIAYQERDQAREQLHSLAKKLVPANSNALLENLPEFPPA IKANSSFTKSNSPSNISSSPVTPLLQPVSPSPEFSNVNVNVVDNHYNFGFQKPATIDFESSVIDYLAKGKVLPQKGKLVE AVRDAGSLLETLLVAGPLPKWRNPPPLTSLKIPPLNIKEYDSLTPASKLNSFGNWWDSAQKPTFLPSSHSSEPLPMLNFA GSSFGSWNKQLQMTSKASVARNQHRLQY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 256 | 244 | 6.2E-56 | – | |
| Pfam | 13 | 210 | 198 | 3.5E-31 | ||
| PANTHER | 13 | 256 | 244 | 6.2E-56 | ||
| Coils | 34 | 61 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0280100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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