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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0378800 |
| Transcript ID | LotjaGi3g1v0378800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Short-chain dehydrogenase/reductase family protein; TAIR: AT3G61220.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9M2E2|SDR1_ARATH (+)-neomenthol dehydrogenase; TrEMBL-Plants: tr|C6T828|C6T828_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0378800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77171191..77173608) extracted from Lotus japonicus Gifu genome v1.2.
GTGAGGTGCAGCGTCCTTGTTCTTGTTCTCATTGTTAACATCGATCACATTGCAGTTCAAGCTTCAAAGATGGAAGAAGC TACACAGAGGTAGCACTTATCCTTCTGAGCTGTTTTGACTTTTGACATCCTTTCTTTTTGGTTACTCCCAACATCCACTA ATCCCATAGAAATCTTATACATTTTCTTATCCCTTTGTCAGGTATGCAGTTGTGACTGGAGCTAATAAAGGAATTGGATT AGAGATAGTTAAGCAGTTAGCTTCAGTTGATATCAAGGTTGTGCTAACAGCAAGAGATGAGAAGAGGGGTCTTCAAGCTT TGGAAACACTCAAGGACTCAGGTTTATCTGACCTTGTGGTTTTTCATCAACTAGATGTGGCTGATGCTGCAAGTGCAGCA TCTCTGGCAGATTTTGTCAAATCCAAATTTGGGAAACTTGATATTCTGGTAACTAACATGGACATTTGGATATTAGAATT GATTCTCCACTTTCAGAATTAATTTTGGGTACTTGGATGTTCAGGTGTCTGTGTTTGGAAATATTTCTGTAATTGATTCT AAAGTTAAAATCAGTTTTGGGGAGAAGCTTTTCAAGAAAAAAGAAGTTAATCCAAACAAGCTAAAAATCAACTTTGGGAT GAAGCTACAAATCCTAGATTTATCTGTGGACAGTACCGATCCATACACACTTATTTGTGTGATTCTACAAACATGCTAGT CAATGTTAGCAGTAATTGGATTAATCTTCTAACACTTGTTGGAGAGTCCCTTGTTCTGTTGCTTGGGAGGCTTAGTTTTC CATGCTTTAGTTATTCCTCTGGTAGTGGGTGAGAATACTAAAGTATATTTTTTTTTCCATGTATCAGGTTGTGTGCCTAC TTGTGTTCTGTTACATTCTATACTAAGCATGCTTCAGTTTCCATATAATTATCCAGTTATTGGGTTATGATGAATTTTCT TGATAGATTTGAAGGAAATGCCATGGCTAATCAGTATTATGTTTACATATTTACTAATAAAAGTTGTCCAATGCAGGTGA ACAATGCAGGAATTGGTGGAGCTGTAATTAAAGACAATAATTTATACAACTTAGCTATCTTTAACATTGTGGTAAGTATC TAGGTGTCTCTAGCATGAAGACAATACATGATTATCGTTTGAAACATGATAGAAGAAAGGCCTTACAAGAGCAGGGTGAA GGTTTTCACTTTTCACCTTTAATGATTGGAGGTCTTTGCCTGTTGGCATTTCCTGTTTTTTTTTTGCTTGTAGGAATGAG AGCTTGTTGTGGACTTTAACAATGAATATATCCTGTATAATGCTTTCAATGAAATGAAATTGGATAATTAAAGTTGTTTA CCTAAGTATACTCTCTGAATTCCAATATTTTCTCATTTGAATTTGTTCTAGACACTGTTTGTTAGAAAGGTTGTAATTGT TTAAACTTTAAAAGCAGGGGATATAGTTAGGGGTTTGAAAATATTCCATAATTGGTTTGATACTGATTTGTCCTTACTTT TCAGGAGTTATCAGAAGATGAGCAGAATAAGGCAATCCCTCAAACATATGAGTTAGCTGAAGAATGCTTGCAAACAAATT ATTATGGTGCTAAAATCACTACTGAGTCCCTTCTACCTCTCCTACACTTATCTGATTCACCAAGAATTGTGAATGTATCA TCCTCCTTGGGGCAGTTAGAGGTAGGCTATCACTTCTTTCATCAATATATTCCAAGGTCTATGCATCAAATCTGACTAAC TAGAGGAAGATTAAACTTGAAACTAGTGTTCAGATAGATTTTTGTATCCTCTGACTCCTTAATCTGCATGAGGTCTTATT ACTTATTGATGTCAATTTCAGTGTGTAAAAAAAGAATGGGCTAAAGGAGTCTTTAGTGATGTTGATAATCTTACAGAAGA GACAGTGGATGGAGTATTGAAAAGGTTTCTGAAAGATTTCCAACAAGGTTCATTAGAAAGCAAAGGTTGGCCTAAGATTT TCAGTGCCTATATTGTGTCTAAAGCTGCTATGAATGCCTATACAAGAATTCTTGCCAGGAAATACCCCACTTTCTGCATC AATAGTGTTTGCCCTGGATTTGTCAAGACAGATATAACTGCCAATAATGGCTTGTTAACTGTTGAAGAAGGTGCTGCTAG TCCTGTAAGGCTAGCACTGTTTCCTAATGGAAGCCCATCTGGCCTCTTCTATCACAGGGGTGAAGTGTTACCCTTTTGAT GGGTAATATATTTTTATGGATTGAAGACAGATTGCATTTTGATTAGTATTTTAATTTTTGGATTGAAGTCAGATTGCATT GAAAAGCTTATGCTTGTCTATTATGATTCTTCCATTATAATCAAATTAATATTAATTACTGATGAAATTATATGGTTCAG TGGCTAAGGATATTGAAA
CDS sequence (LotjaGi3g1v0378800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAAGCTACACAGAGGTATGCAGTTGTGACTGGAGCTAATAAAGGAATTGGATTAGAGATAGTTAAGCAGTTAGC TTCAGTTGATATCAAGGTTGTGCTAACAGCAAGAGATGAGAAGAGGGGTCTTCAAGCTTTGGAAACACTCAAGGACTCAG GTTTATCTGACCTTGTGGTTTTTCATCAACTAGATGTGGCTGATGCTGCAAGTGCAGCATCTCTGGCAGATTTTGTCAAA TCCAAATTTGGGAAACTTGATATTCTGGTGAACAATGCAGGAATTGGTGGAGCTGTAATTAAAGACAATAATTTATACAA CTTAGCTATCTTTAACATTGTGGAGTTATCAGAAGATGAGCAGAATAAGGCAATCCCTCAAACATATGAGTTAGCTGAAG AATGCTTGCAAACAAATTATTATGGTGCTAAAATCACTACTGAGTCCCTTCTACCTCTCCTACACTTATCTGATTCACCA AGAATTGTGAATGTATCATCCTCCTTGGGGCAGTTAGAGTGTGTAAAAAAAGAATGGGCTAAAGGAGTCTTTAGTGATGT TGATAATCTTACAGAAGAGACAGTGGATGGAGTATTGAAAAGGTTTCTGAAAGATTTCCAACAAGGTTCATTAGAAAGCA AAGGTTGGCCTAAGATTTTCAGTGCCTATATTGTGTCTAAAGCTGCTATGAATGCCTATACAAGAATTCTTGCCAGGAAA TACCCCACTTTCTGCATCAATAGTGTTTGCCCTGGATTTGTCAAGACAGATATAACTGCCAATAATGGCTTGTTAACTGT TGAAGAAGGTGCTGCTAGTCCTGTAAGGCTAGCACTGTTTCCTAATGGAAGCCCATCTGGCCTCTTCTATCACAGGGGTG AAGTGTTACCCTTTTGA
Protein sequence (LotjaGi3g1v0378800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEATQRYAVVTGANKGIGLEIVKQLASVDIKVVLTARDEKRGLQALETLKDSGLSDLVVFHQLDVADAASAASLADFVK SKFGKLDILVNNAGIGGAVIKDNNLYNLAIFNIVELSEDEQNKAIPQTYELAEECLQTNYYGAKITTESLLPLLHLSDSP RIVNVSSSLGQLECVKKEWAKGVFSDVDNLTEETVDGVLKRFLKDFQQGSLESKGWPKIFSAYIVSKAAMNAYTRILARK YPTFCINSVCPGFVKTDITANNGLLTVEEGAASPVRLALFPNGSPSGLFYHRGEVLPF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 298 | 298 | 1.1E-164 | – | |
| PANTHER | 1 | 298 | 298 | 1.1E-164 | – | |
| Gene3D | 2 | 298 | 297 | 1.1E-91 | – | |
| SUPERFAMILY | 7 | 284 | 278 | 2.69E-48 | ||
| Pfam | 8 | 172 | 165 | 8.7E-27 | ||
| PRINTS | 8 | 25 | 18 | 4.3E-24 | ||
| PRINTS | 84 | 95 | 12 | 7.4E-10 | ||
| PRINTS | 84 | 95 | 12 | 4.3E-24 | ||
| PRINTS | 154 | 170 | 17 | 4.3E-24 | ||
| PRINTS | 160 | 168 | 9 | 7.4E-10 | ||
| PRINTS | 223 | 242 | 20 | 4.3E-24 | ||
| PRINTS | 223 | 242 | 20 | 7.4E-10 | ||
| PRINTS | 242 | 259 | 18 | 4.3E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0378800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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