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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0388000 |
| Transcript ID | LotjaGi3g1v0388000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 39S ribosomal protein L46, mitochondrial; TAIR: AT1G14620.1 decoy; Swiss-Prot: sp|P36528|RM17_YEAST 54S ribosomal protein L17, mitochondrial; TrEMBL-Plants: tr|A0A1J7GW98|A0A1J7GW98_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0388000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:78499725..78502559) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTTAGGTTTCGATGGCGACAGCAATATCAACGTAGATATCCTGATGAGTTTCTCGACAAGTCTGATGCAAGGTATAG GGGCTAAATAGCAGGTCTATACTCTATAGTTAAAAACTTTGGTTGCTTAAAATTAATTAATTGATTTAAAGAGAGAGATC ATGAGAGGCTTATGTAATAGTTTATAGAAAGAGTATATTTATAAGCTTCAAGAGAGTTGAAAAGATGAAAAATTAAAATT AGAAATGAAAATAAAGGAAAAGAAAGGATAGTGATTAGTGAAAAGAGTTTTTTAATGGTTTTTAACAAAACAATTCATAA TGGTATCTATGAACTTTTACTCTTTCTATCCTCAAAAATTGATTCTAAGGCTTAGCAATATAAACCACTGTGTACAATCA CTGAGTTGGAATGATGACAAATTTATAAGTATGAAGAAAAAATTATTTGCTTTTGAGAAAACCCAATTTCTGTGTGGCAT GAGATTCGATCGTCAGACTTTCATAAAAGGGTTGCAGACCATTAAGTGACAATGTAAGAAAGCACAGCATTTGATGTCAA ATGTTCAAAGACACTTGATAATAACTAATAAGAACTGTTTGATGAGTGACATATACACATATTATAATAGTATTGAAATT GCAGTTTGTCATTTCTGATCGGGTAGCCATAGTCATACCATAAACCATTAGTTACATGAAAACAGATATAGTTACTACAA TACAGTCCTAGATATAGAATACAAGAGGGAGGGTTCACTCTGGCTGGCGTTTAATCCAAAGCTGATTAGAATGGAACCTA ACCTCTAAAATCAGGCAGTTCGGGCTTGTTTGGGGCCATAAATAGCCTTGTTTGATTTGCATACCAGGTTTTATCATCAG TCTCAAATGGATTTTTTGTTTCCTTTGGTAAAAAATGGTCTGAGTGTGTTTTGGGAAGCGCAAAACTTCAGTTGCCGCTG ATAACATTCTTATTCGAGTATCCTACAAAAAATTAACCCTTAAAATAAATGATACCATTTAAAAGTACGCGTCTCTACAT TGACTTTTTTTGCTAGATTCTATTCATTGGCAGTGATTATGATACAAATATATATGTCTTTATCATTTCCTTTACCAATA TCTGTACATCCATCTGTTTAATGGGTGTCACTACTGTCAAAGTACAGATGGATCCTTCTTTTCATTTACTGACGTGAACA TTATGTTACGTCCAGGGGAAAAGGAGATTATCAGATTGACTATGTGCCTGCACCTCGAGTCACTGAAGCTGACAAAACCA ATGATCGAAAGTACGTAGACTGTTACCTTATATAATTTACAGTAATAAAATGCTTCATTTGAATGTATGAAGGAAAATGA ATGCTATATAAGAGATTCCATCATGTCATATACTTATGATTTCTCCAATGAAATATTTACTTGGGTCTTCACCTGTTGCT TTAACTTTTGGGATAGTTAGTTCATACATGGTATTAGAGTCTCTATAATCAATGGGTCTATCATCCTTGCTTCCCCCCAT TCTTCTAGTAAAAAAATGAATTTTGTACTAAGTAGGTGGACTTTTGTAATGTCCACACTTCATTCATGTGTCTTTACCTA ACCTCACAACTCAAGCTTCTGTGATAGTTAGTTAATGGCAACTGAAATCTCTTGTCCCCGTCCTCCTTGGGAGTTGTCAA CCGTCCATTTTCCTTGGTGGGATGTTTAGTAAAGGTAGTCATAATCAAGGGTTATTGAGTTTGTTTTTTATTTCCTTACC TGCTTTATTTGTGACTGAATGAGTTTAGTTTAGACAAATCGGCGATATTATAATGTTGATGCACGCTTGCCTATGGATAT TTAAGTTGGATTCTGAATGCACCTTCAGTCTTTAAGAAAGCCTTCTTAGTAATGTTATATAGCCGCTGATAGTTCTAACT GAGAAATACACTTGTTTGAGGGCAGGGTAGGTCAATCTTCATCCTATATCTTAGGTAACAGATTCGAAACTACTATATTT TGAATGCTCTTTGGAGACAAGCTTATTTTGGGATTTGTGTTATCCCTTTTAATTTGTTAAGAACAGAATTTGTCTTCAAA TATAATTTCTGGGCGTTATTCACTTACTGCTTGCCACTTTAGGTCATTAAATAGAGCTCTTGACAGAAGACTCTACCTTC TTCTCTTTGGTAATGGATATGGGGCTCCAAGCGGAAAGCCTGTATGGCATTTTCCAGAGAAAGTTTATGAATCTGAGGAC ACTATGCGTAAGGTGAAAATACTTATGCGACTTTCTCCTCTTATTTCCTTATGTTCTTTTGCCTCTGAATTTTTTTGGAA ATTTTGCAGTGTGCAGAGTCTGCGTTAAAATCAGTCTTAGGAGATCTTTCTAACACATATTTTGTTGGAAATGCTCCAAT GGCCCATATGGTTGTTCAGCCTAAAGAAGACCTTTCAGGCTCCACATCTTTTAAGGTATATTTATAGGAAATTTGTGGTA CTTCTGATCTACTATTGAAAGGTTAATATCTTTCAATATGTTCATTTGTATGAGTATGTGTTGGCAATTGCTGAAGTGAC TTCCTAGGCCTTTGCCCCTTTTTCTTTGTTGTACCTCTTGATTCCAGAACTAGCATTTTCAATACTTCTGCCTTACTTCT TGACGTGGAAATTGATTATATTTGCTCATTCTTTGCTGAATCTTCTGGCAGAATTTCTTCTTCAAGTCACAAGTAATTGC TAAAAACCAGTTTGACATCGGAAAATGTGAGGATTTTGTTTGGGTGACTAAGGATGAGTTGTTGGAGTATTTTCCTGAGC AAGCTGAGTTTTTTAACAAGATGATCATTAGCTGA
CDS sequence (LotjaGi3g1v0388000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTAGGTTTCGATGGCGACAGCAATATCAACGTAGATATCCTGATGAGTTTCTCGACAAGTCTGATGCAAGGGGAAA AGGAGATTATCAGATTGACTATGTGCCTGCACCTCGAGTCACTGAAGCTGACAAAACCAATGATCGAAAGTCATTAAATA GAGCTCTTGACAGAAGACTCTACCTTCTTCTCTTTGGTAATGGATATGGGGCTCCAAGCGGAAAGCCTGTATGGCATTTT CCAGAGAAAGTTTATGAATCTGAGGACACTATGCGTAAGTGTGCAGAGTCTGCGTTAAAATCAGTCTTAGGAGATCTTTC TAACACATATTTTGTTGGAAATGCTCCAATGGCCCATATGGTTGTTCAGCCTAAAGAAGACCTTTCAGGCTCCACATCTT TTAAGTCACAAGTAATTGCTAAAAACCAGTTTGACATCGGAAAATGTGAGGATTTTGTTTGGGTGACTAAGGATGAGTTG TTGGAGTATTTTCCTGAGCAAGCTGAGTTTTTTAACAAGATGATCATTAGCTGA
Protein sequence (LotjaGi3g1v0388000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRFRWRQQYQRRYPDEFLDKSDARGKGDYQIDYVPAPRVTEADKTNDRKSLNRALDRRLYLLLFGNGYGAPSGKPVWHF PEKVYESEDTMRKCAESALKSVLGDLSNTYFVGNAPMAHMVVQPKEDLSGSTSFKSQVIAKNQFDIGKCEDFVWVTKDEL LEYFPEQAEFFNKMIIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 176 | 174 | 5.6E-79 | ||
| Gene3D | 48 | 176 | 129 | 8.5E-28 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. |
Expression pattern of LotjaGi3g1v0388000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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