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LotjaGi3g1v0396600.2

Overview

Field Value
Gene ID LotjaGi3g1v0396600
Transcript ID LotjaGi3g1v0396600.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Beta-glucosidase; TAIR: AT5G44640.1 beta glucosidase 13; Swiss-Prot: sp|Q9LU02|BGL13_ARATH Beta-glucosidase 13; TrEMBL-Plants: tr|A0A0B2R4L8|A0A0B2R4L8_GLYSO Beta-glucosidase 13; Found in the gene: LotjaGi3g1v0396600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:79721863..79723713) extracted from Lotus japonicus Gifu genome v1.2.

TAAATTAAAAAATCCCAAGTCTTAAAGGATCAATTGGGGGTAATTGGGATTATTCAAAGCATCGACTGGGTTATACCATT GTCTCAATCCACAGCAGACATTGATGCAACATCTAGGGTCAGAGCTTTCACGGTGGATTGGTAAGCAATTACATCATTTT TATTATGATGATCATATTAATTTGAGGTATCACCTCACCATTTTGTTTCCAATTAGGTTGATGGAACCACTGAATTCAGG TTCATACCCGGTTGAAATGGTTTCCTACCTGGGAGAAAGACTGCCAAAGTTTTCTGAAGAGCAATCAGCAATGTTGAAGA ACTCTTTTGATTTCATTGGCATCAACTATTACTCTACAGCATATGCTGCTGATGCTGAATGCCCCAACCAAAACAAAACC TACCTCACAGATTACTGTGCTAAGCTTACTTGTAAGATGTCATGAACTAAATTATTGTGACTTATAATAATATATGTAGC ATTTCTAATCTTGCTAAAATTAAGGGTTTACATAATTACATTTACATGTGTAAATGATGTTTCAGATGAGCGTGATGGAG TTCCCATTGGTCCAAGGGTAAGAACTATAAATTACTTGAAAAAATTCCTTCTATCACAACAGCATTCATCTTAACAATTC AAGCTCAGAACTATTACAGATTACTTAATTAGTTAACAGCTGGTCAAAGAGGTTCTTAAAAATTGTTGGAAAGTTCTCAA TCCTGAGCTAGCTTTGCCGCAGGATTATAAGAATTCAAACTATTTTCTTGTCCTTTGAACATTGTTTTCTATAGCTCAAG GATTTTAAAAATTTCATCACTCTCTAATGATCTAATCTATGAAAGCATGACTTATAGAGATTATTTCACAGGCTGCCTCA GAGTGGATATACCTCTACCCGCGTGGAATCGAAGAAGTGATGCTCTATTTAAAGAACAAGTTCAACAATCCAGTCTTGTA CATAACAGAGAATGGTATGTTACATTTTCAATATAGTTATGTATTCGTTATGATGTAATTAATAATTGGTCATATAAATT TGGTAAATTCTTTAATTACATTGCTTGAAATGACTTGCAGGTTATGATGAGTTTAACGATGGAAAAGGATCACTCCATGA CCAAGAGAGAATAGACTGCCACATTCAACATCTTTCTTATGTTCACAGTGCCATATTGTAAGTATATGAAATTAATTCAT TCCATTAACCTTTACATGTTTGAATTGGTTTCTCTTTCGCTTGTAGTTAGTTTTGACTTTAGAATCAATTGTAGAAGAAT TTTCTAATATGCACTAAATAAGTTTTGCAAATTTAGATGTTCTAACTTGAGTACATCTCTGCATTTGGTAGGAAAGGAGT GGATGTTAGAGGCTACTTTGTATGGTCACTTTTGGATAATTTCGAGTGGACAGACGGTTTGGACTTGTTTATGTTAATTA TACTGATGGATTACAGAGATATCCAAAGGATTCAGCTAGATGGTTTAAGAGGTTTCTCCATCAAGAATTGAAATCTCAGT GAAGATGCAGATCAATGGAAATGACAGTTTATTGAATTACTAGTAAGAGGTCCTCCATTTTCCCAATTTGGTATCAAAAA TTAACTTTTAACACTTCGTGCATGTTTGAAAACTCATTCGAAAACACATGAAGCCACAATCATAGTGGTTGTAGAGGCGT GGAATAACATAAACTCTGATATAGTAAGGAACCCCTAAAGAGGAAGAGAAACCCACCTATAGGTAGAGAACTCTTCCAAG GGTTTTGCAATTATGCTCTTATTGTTTTGAGATTGCATAAATTATATAGCTATCGTTTCAAAGGAGTTCAATTTTAATTT TTGTTCTCAGC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0396600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAACCACTGAATTCAGGTTCATACCCGGTTGAAATGGTTTCCTACCTGGGAGAAAGACTGCCAAAGTTTTCTGAAGA GCAATCAGCAATGTTGAAGAACTCTTTTGATTTCATTGGCATCAACTATTACTCTACAGCATATGCTGCTGATGCTGAAT GCCCCAACCAAAACAAAACCTACCTCACAGATTACTGTGCTAAGCTTACTTATGAGCGTGATGGAGTTCCCATTGGTCCA AGGGCTGCCTCAGAGTGGATATACCTCTACCCGCGTGGAATCGAAGAAGTGATGCTCTATTTAAAGAACAAGTTCAACAA TCCAGTCTTGTACATAACAGAGAATGGTTATGATGAGTTTAACGATGGAAAAGGATCACTCCATGACCAAGAGAGAATAG ACTGCCACATTCAACATCTTTCTTATGTTCACAGTGCCATATTGAAAGGAGTGGATGTTAGAGGCTACTTTGTATGGTCA CTTTTGGATAATTTCGAGTGGACAGACGGTTTGGACTTGTTTATGTTAATTATACTGATGGATTACAGAGATATCCAAAG GATTCAGCTAGATGGTTTAAGAGGTTTCTCCATCAAGAATTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0396600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEPLNSGSYPVEMVSYLGERLPKFSEEQSAMLKNSFDFIGINYYSTAYAADAECPNQNKTYLTDYCAKLTYERDGVPIGP RAASEWIYLYPRGIEEVMLYLKNKFNNPVLYITENGYDEFNDGKGSLHDQERIDCHIQHLSYVHSAILKGVDVRGYFVWS LLDNFEWTDGLDLFMLIILMDYRDIQRIQLDGLRGFSIKN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.20.20.80
1 196 196 7.4E-61 –
PANTHER
PTHR10353:SF140
1 184 184 1.3E-73 –
PANTHER
PTHR10353
1 184 184 1.3E-73
IPR001360
Pfam
PF00232
2 181 180 5.8E-39
IPR001360
SUPERFAMILY
SSF51445
2 184 183 4.99E-50
IPR017853
PRINTS
PR00131
35 49 15 4.8E-18
IPR001360
PRINTS
PR00131
110 118 9 4.8E-18
IPR001360
PRINTS
PR00131
129 140 12 4.8E-18
IPR001360
PRINTS
PR00131
150 167 18 4.8E-18
IPR001360

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004553
Molecular function Hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0396600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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