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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0411700 |
| Transcript ID | LotjaGi3g1v0411700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT1G17370.1 oligouridylate binding protein 1B; Swiss-Prot: sp|Q9LQI9|UBP1B_ARATH Oligouridylate-binding protein 1B; TrEMBL-Plants: tr|A0A151S6P1|A0A151S6P1_CAJCA Nucleolysin TIAR; Found in the gene: LotjaGi3g1v0411700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:81559169..81563301) extracted from Lotus japonicus Gifu genome v1.2.
GATGCAGAAGTCTTATAGGATTTTCTGTTTCCCTCACTGCTTCAGTTTAATTTGTAGTTTGCTCATGTTTTAGAAGTGAA GGGTGGGCAGAATTCATTTTCAACAACTTCTGTTAGGCTGAACACTTGTATGCATTTTTGTTTTGCATTGTTTGGGTTGT ATCTTTCTTCCTCCCCATCCACCCTAGTAAATGTATTTCATGCCACTGTATAGTGTATTGGTAGATACAATACAATTTCT CTACCTTGATTTGCCCCCTTTTCCTTTATTTTATTTTCTTTTTCACATTTTGATTTTTGCAGATTGAACCAATCCCAAGT GGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTGAGTGTTTGTCTAGACATTTTTTTATCTTTTACT TTTCTATTTTAAATCTCATATTTCTCTGCTTGCTTTAAGTTTGTGATTTAAACATGTTTAGGCACTTTTACATTAATTTT ACCATTTATTTATGAGATTAATTTCTATGCACCGACGGTGTAAATAAGTTTTACACCATCATTCAATCACATCCCTCCAT TTTGTTTTCTCACAATTAATTTTGAATTTAATAATATCTAAAATAGAAAATAGAAGGTTGTGATTGAATGATGGTGTAAA ACTTTTTACACCGTCAGTGCATAGAAATTAATCTCTTTATTTATTTTCTCTTTTTTCTAATATCAATAGGCATTAAATGC ATTTGAGTTGTTGATCTTTGGTATCTTACTTAAGTAGATATATTGTCATGCTTACAGCCAATTCTGTTGCACCAAAACAT TACATGTCTGTTACATCTTGCTTTTGTGACTTTCAGTGTTTGTACCCTAATTATTTTTTTGTTTCTTGTCTTCTTTTTTT AAATTGTAGCTTCTTTTTCTTTAATAAAATGCAGGTATGTGGGGAACATCCACACACAGGTAACTGAGCTGCTTTTGCAA GAAGTTTTTGCAGGTACAGGCCCTGTTGAAGGTTGTAAACTTTTCAGAAAGGAGAAGGTATGTCTCTAATATGGTTATGT CTTGGTCTGGTTATAATTTATTAACTTAAAGTGCTAGCTGAAACTGGAGATTTATATTTAACATCTTGTGCCTCTGTTAT GCAGTCATCCTATGGATTCATTCATTACTTCGATCGTAGATCTGCTGCTCTTGCCATATTAACTCTCAATGGGAGGCATC TGTAAGGGCATTTCTTTTCAACTGTGTTAGATTGGTTTTGATTTGTACTCAAATTTTAATTCAATACTTTACAGATTTGG GCAGCCCATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAAGATACATCAGGTTGGTCCAGAGTTAGATATATAG ATATTTATGTTTGAACAAAATTTGTGGCTTGTGGCCCTTTAGGAATTTTTAACAAAGATACTATGATAATGTATATTACT TCAATTTGCAGGACACTACAACATATTTGTTGGTGATCTTAGTCCTGAGGTTACTGATGCTACGCTGTTTGCATGCTTTT CTGTCTACCCCAGTTGTTCGTAAGTTTCATTCTCTTATGATTTCTCTGTAAAACAGCTATTTTACCCATTTTTTGCATTT GGAATTGGATTAATCTTCATTTCTCGAAATGGAGGAAAAATGTTTGTGCTACCTCGTGTGATAAGTATACATTGCATGCT GTCATTTTCTGGGTGACTTTGCATGGTTAACCAAATTTATCTTTCTGACGCTACAGTGATGCAAGGGTTATGTGGGATCA GAAGACTGGGCGTTCGAGGGGATTTGGATTTGTTTCATTTCGTAGTCAACAGGTCTAATTTTGTTTTAAAAAGCTTTTTT TGTTGGCTGTTTAAGTGCTCTCTATGATGTTTTTGACTTCAATATTCCTGGACTTTCTTGCAGGACGCACAAAGTGCTAT TAATGATTTGACTGGTAAGAAACTTGTCCTGGCTTACCAACCTTTTAGCTTTGAGCCACTTTATCAAAATTATTTAATGC CAAAGATCTTTCTTACTTGATGTCAGTTGAAACAAAAATAGTCTCTTATTGATGTTAGCTTTATATGTTGCTTAGTTACT TTAAGATTCAAAATGAAATATTGTCCTATAGACTTCTCGGGAAGTTTCACCTCCAATGTATGCAATTCAAATTGATTCTA GGAGGCTCATGTTTTTTTTCCTGTCCTTCTGTACTTCCTGTATGATCAAGGCGTAACGATGCCCTGCCTTTTTCTTTCAG GAAAGTGGCTTGGAAGTAGACAAATACGCTGCAATTGGGCAACAAAAGGTGCTGGTGGCAATGAAGAAAAGCAAAACTCA GACACCAAAAGTGTGGTAGAACTAACTAATGGTTCATCTGGTTAGTAGATTGTACTGTAGTTCCTGAAATGACTGTGGAT ATGGTTAATTTAAACATTTAGCTTCTATAATTCTTGATTTAAAGGTGGATCCGAGTGCTTCAAATGTTCTGTCACCATTT TTTATCTTTTGATCCATAAAGAATTATAGACGATTGAACTTGTAAAAGTCTTTCAGTTTGCAAAGTATTCTGTTTTCCTA GTCAACAGATGGAACTAACGAACATATTTTATCCTTGGACAGAAGATGGTAAAGAAATATCTAACAGTGATGCTCCTGAG AACAATCCTCAATATACTACTGTTTATGTGGGTAACCTTGGTTCAGAGGTAAGAAACTTTCTTTATCTCTATATTTCAAT TTTTGGGGGTAAGAAAAAAAAGCAACCGCTACTCTGATGAAAAATTTTCAACCTTATTGTGATGCGATTGTGACTAATTT GTAGTCCACAACTAATATTTCCGTTGCTGAAACTTTACCTCGTTTATCTTATTGTTTAATTCTCTTCCTCTCTTTGGCCA TTTGGTTAGAGATCTAAGAGTACTTTTGCTTCAAAAAAAATCTTCTGATAGAATAAAATATGCCATGTTTATTTGTTAGC TGTATTTTTTAATCCTGCTGAAATTTCCGTTGTTATTTTAATCATCATTACCTTTTGGTGATTCTGCAGGCAACACAGCT CGATCTCCATCGCCACTTCCATGCTCTTGGAGCTGGAGTAGTAGAGGAGGTTCGTGTCCAGCGTGACAAAGGGTTTGGTT TTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTAGCTATTCAGATGGGGAATACTCAGTCTATTCTCTGTGGCAAACAA ATTAAGGTGTGGCTTTCACCTTCTGATGTGATCGTTAATAACTACATAATGTATCTATTCTTTCTTGTGATTAATATTGT TGTTGTATTTTCCCTGGCTCTGGACTTAAGAGCTGTCAGCACTTCTTGTTTTGTTTTGTTGTTTGGGGGAAGGTTGGGTG TTGCGGTGTTGGCTTTTTTCTGTTTTTCATCACTTGTGCTCAGTAGGTGGAATATATAAGAACGAAAGTTTGATTGGTGG TTGGTATGCTACTCATGCTATAATTTTCAGCTTTAATCTTACCACTAGAGAAGGGGTTTGAAATTTGTGCAGTGTCATTG TGTATTTGAAAGCAATTCTTTTTCTTGGTTTATATGCTCCTTTTTCTACTATTGAATTTGAACTGGTGGGTGAGCACATT TGAGATTCTGGCGTTGCCTTGTTGTATATTATGGATTCTTGCATAGTATTTTGTTAAATATTGGGAGCTATGATGCTCAA TCTGTTTTTAATAGTTCATTTCCTTTGAACTGTTTTTTTTTTCACTCATTTATATTATTTGTTTCTATCTTCACAATATT CTTCGTATATCCACTCCTATTCATTTCTATCACGTGCAAAATTTTATTTCCATAGGCTATCTGTTGGACTGTAATTCTAA CTGCAGTTATATGTTAAATATAGTGCTCATGGGGCAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCTCTTCCCCCA CCTGCTCCTGCAACTCTGCCTGGCTTCTCTGCGACTGATCTTCTGGCGTATGAGCGACAGCTAGCAATGAGCAAGATGGG TGGTGTCCATGCCTTGATGCACCCCCAAGGGCAGCACCCTCTTAAACAGGCAGCAATTGGAGCGAGCCAGGCGATATATG ATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAGTGA
CDS sequence (LotjaGi3g1v0411700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGGATCAGAAGACTGGGCGTTCGAGGGGATTTGGATTTGTTTCATTTCGTAGTCAACAGGACGCACAAAGTGCTAT TAATGATTTGACTGGAAAGTGGCTTGGAAGTAGACAAATACGCTGCAATTGGGCAACAAAAGGTGCTGGTGGCAATGAAG AAAAGCAAAACTCAGACACCAAAAGTGTGGTAGAACTAACTAATGGTTCATCTGAAGATGGTAAAGAAATATCTAACAGT GATGCTCCTGAGAACAATCCTCAATATACTACTGTTTATGTGGGTAACCTTGGTTCAGAGGCAACACAGCTCGATCTCCA TCGCCACTTCCATGCTCTTGGAGCTGGAGTAGTAGAGGAGGTTCGTGTCCAGCGTGACAAAGGGTTTGGTTTTGTGAGGT ACAGTACTCATGCTGAAGCAGCTCTAGCTATTCAGATGGGGAATACTCAGTCTATTCTCTGTGGCAAACAAATTAAGTGC TCATGGGGCAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCTCTTCCCCCACCTGCTCCTGCAACTCTGCCTGGCTT CTCTGCGACTGATCTTCTGGCGTATGAGCGACAGCTAGCAATGAGCAAGATGGGTGGTGTCCATGCCTTGATGCACCCCC AAGGGCAGCACCCTCTTAAACAGGCAGCAATTGGAGCGAGCCAGGCGATATATGATGGTGGGTTCCAGAATGTTGCAGCT GCACAGCAAATGATGTACTACCAGTGA
Protein sequence (LotjaGi3g1v0411700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNS DAPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVVEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILCGKQIKC SWGSKPTPPGTASNPLPPPAPATLPGFSATDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGASQAIYDGGFQNVAA AQQMMYYQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 54 | 54 | 4.07E-15 | ||
| Gene3D | 1 | 60 | 60 | 4.5E-14 | ||
| ProSiteProfiles | 1 | 47 | 47 | 11.725 | ||
| PANTHER | 1 | 208 | 208 | 2.3E-110 | – | |
| PANTHER | 1 | 208 | 208 | 2.3E-110 | – | |
| Pfam | 2 | 41 | 40 | 3.2E-9 | ||
| MobiDBLite | 47 | 89 | 43 | - | – | |
| MobiDBLite | 50 | 89 | 40 | - | – | |
| Gene3D | 61 | 168 | 108 | 1.4E-20 | ||
| SUPERFAMILY | 79 | 174 | 96 | 2.71E-20 | ||
| CDD | 90 | 165 | 76 | 2.90677E-34 | – | |
| ProSiteProfiles | 90 | 165 | 76 | 14.266 | ||
| SMART | 91 | 161 | 71 | 4.9E-15 | ||
| Pfam | 92 | 157 | 66 | 8.9E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0411700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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