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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0440000 |
| Transcript ID | LotjaGi3g1v0440000.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein 18 like; TAIR: AT1G12470.1 zinc ion binding protein; Swiss-Prot: sp|P59015|VPS18_DANRE Vacuolar protein sorting-associated protein 18 homolog; TrEMBL-Plants: tr|G7LFH7|G7LFH7_MEDTR Vacuolar sorting-associated-like protein; Found in the gene: LotjaGi3g1v0440000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85319964..85320586) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATCAAGGGAGACAAGTGTTCACAGTGGACCTCCTCGAACGCTATGCTGCAAAGGGGCGTGGAGTTATCACCTGTAT GACTGCTGGAAACGATGTCATTGTGATCGGAACCAGCAGAGGATGGGTCATCAGACACGATTTTGGGGTTGGCGATTCAC ATGGTGAAGTTTCCATTCATATAGATACCTCATATTTAGTCACTTTTGCTTTTTGGGTATCTAAATTGGTGATTTTATTT GTCAATGAAGATAGAGAGTGTCAATGATTTTGTTCTTGGGGGTTGATGATGGTTTGCTTTAGCTTATGCTGGAATTTGGA GTTTTTCTTGTGTTTTGATATTCTGCTGTTTATTCAACTGGGCTGGTGAGAGTCTGATAGGTTGTTATCTGTTGGTGTAC AGAGTTTGATCTCTCGGCGGGTCGTCCGGGGGACCAGTCAATCCACAGGGTTTTTGTTGATCCAGGAGGGAGTCATTGTA TTGCCACTGTTGTTGGTCCTGGGGGAGCTGAAACTTTCTATACTCATGCCAAATGGACGAAGCCTCGAGTTTTGAGCAAG CTGAAAGGTCTTGTTGTGAATGCTGTTGCGTGGAATCGGCAACAGATAACTGAAGGTAGTTAG
CDS sequence (LotjaGi3g1v0440000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCAAGGGAGACAAGTGTTCACAGTGGACCTCCTCGAACGCTATGCTGCAAAGGGGCGTGGAGTTATCACCTGTAT GACTGCTGGAAACGATGTCATTGTGATCGGAACCAGCAGAGGATGGGTCATCAGACACGATTTTGGGGTTGGCGATTCAC ATGAGTTTGATCTCTCGGCGGGTCGTCCGGGGGACCAGTCAATCCACAGGGTTTTTGTTGATCCAGGAGGGAGTCATTGT ATTGCCACTGTTGTTGGTCCTGGGGGAGCTGAAACTTTCTATACTCATGCCAAATGGACGAAGCCTCGAGTTTTGAGCAA GCTGAAAGGTCTTGTTGTGAATGCTGTTGCGTGGAATCGGCAACAGATAACTGAAGGTAGTTAG
Protein sequence (LotjaGi3g1v0440000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDQGRQVFTVDLLERYAAKGRGVITCMTAGNDVIVIGTSRGWVIRHDFGVGDSHEFDLSAGRPGDQSIHRVFVDPGGSHC IATVVGPGGAETFYTHAKWTKPRVLSKLKGLVVNAVAWNRQQITEGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 125 | 123 | 1.3E-26 | – | |
| PANTHER | 3 | 125 | 123 | 1.3E-26 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0440000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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