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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0493100 |
| Transcript ID | LotjaGi3g1v0493100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT5G19350.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B'; TrEMBL-Plants: tr|I1LJV7|I1LJV7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0493100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91137315..91145452) extracted from Lotus japonicus Gifu genome v1.2.
CTAAATCTTATGAGAGTTTATTACAACAATGTAAACCTAACATGAGGCCACTCCAATGTCTCCCATATAATATTGGCAGT TAATATCTAACTAAATAATAGATTTTTTATTGAATTTTTTTTATCTAACTAAATAATAGATGGTAGATCAATGGAGTAAT TATAAACCTCAGTGAATATTAGTGCAATTTGCCAAAAATCAAAATACTTTTAGGGCGCCAACTTGAGTTGACACAACTGA CCGCGACTTTCAAGTTTAACTCTATCATCCCCATAAGTTGAGAGTTCAAATCGGGAGCAAGCTTCTTCCAACCTCCTCAG CATGTTACTAACGCCCTAGTTACTACTTACTAGTCTACAAATGTTTTTTTTAAGCTAATAGGAATAGTTTTTATTTTTTC AACAATTGAGACATGTAGAGCCCAGCCCATTAGGATGCTATAAAGCAGGCTCAATCAGTTCGGTGCGAAAGTGAAAGTGA AAGTGAAGTTTTCAGTTCAGAATGGGAACTCCGAGCGGTGAAGTACGAACCCTTTGGGTCGGAGATTTACAGTACTGGGT CGACGAAAACTACCTCTCTCAGTGCTTCGCACACACCGGCGATGTTCTCTCCGTCAAGATCATCCGCAACAAGATCACCG GCCAACCGGAGGGCTACGGCTTCGTCGAGTTCGTCTCCCACGCCGCCGCCGAACGCGTTCTCCACACCTACAACGGAACC CTCATGCCCGGAACCGAACAACCCTTCAGACTCAACTGGGCTTCTTCCGGCGGCGGCGGCGACGCCGGCCCTGACCACTC CATCTTCGTCGGCGATCTTGCCCCTGACGTCACTGATTTCCTCCTCCAGGAAACTTTTCGGACTCATTACCCTTCTGTTA GAGGCGCCAAGGTCGTCACCGACCCCGTCACCGGAAGGTCCAAGGGTTACGGGTTTGTCAAATTCTCCGACGAGGCGCAG AGGAACCGCGCCATGACTGAAATGAACGGCGTTTATTGCTCCTCTCGTCCAATGCGTATCAGCGCTGCAACGCCGAAGAA AACCCCTTCTTTTCAACAGCAATATGCTCCAACCAAAGGTTCTTGAATTTCCCATGAGTTTAAGGCTCATCCTATGGTTA ATTATGCTTATTATTTATGCGCATAGTTGAATTATGTGTTTAAGCCCGTTTGGAAGAGCTTATTTGACTTTGTCTGATAG CATAAGCGCTTGTGTAAGTGTTTGAGAGAGCTTATGCAAACAGTTTATGATGCTGTTTTGAGCTTATTTTCATAAGCTAG TCAGGATAGCTTATGAAAAAAGAGCTTATGCTTATATATAGCTTATTTTCAATTTATTTCAATAAATTGTTAAAAATAGC TTATGGCGCTTACCATAAGCTTTTAATTAAGCTGTTTTCCCAAACGGGGCCTTAATGTTTTGTTGTTAATTAAGCTTAGA AGAGGCACTAATGGTGAGTCTCTTTTCTTTTGCAGCAATGTATCAATATCCGGCATACACTGCCCCAGTTGCCCCAGTGA GTGTAGTTGCACCAGAGAATGATGTGAATAATACTACTGTAAGTCAAATAGATCACAGAACTATGCTTTTTGTGATTTCT GTTGTTTTTTTATTTGTTCCCAACTTGACGATTGACCTCACGGTAACAACACAAGTCTTTTCAGTGCACTTTGACCTCCT GGGAAGTTTTCCCGGAAAGTGCGTGAGTGAGGACAAAGCGCACAAGACTTCTGTCGTAACCGTGAGGCCAGTCGTTAGAT CAAGATGTTACATTGGATTTGGAGTTTGAACTCATCTTTTGGTTTGTATTGTAGGTTTGTGTTGGTAATTTGGATCTTAA TGTAACGGAGGAGGAGCTTAAGCAAACGTTTGTGCAGTGTGGGGATGTTGCGTCTGTCAAAGTTCATGCTGGCAAAGGAT ATGGTTTTGTTCAATTTGGGACTAGGTTTTCTGTTTTTATTCCCTTTCCTTAATTTTTAATATGTGAATTGTGAATCATC TTTATGGGGTTGCTCTAATGTTTTTGAAACTAAAAGGGAAATGGTATGCTTTTGACTGTTGCTACCCCTTTTTTCTTTTC CAAGGCAATAAGTGTTTCATGTGGCTTGATGTTACTCTGCATCTTGCGAGGTCTTCCATCAATCTTATTTTCTTCTTCTA CTATTCCTTTTCTTTATCCTATTATTAATTGGGTTTTTAACCTCTACCATGGTTTATGTCTGTAGAGCATCTGCTGAGGA TGCTATTCAGAGGATGCAGGGGAAGATGATAGGTCAGCAAGTGGTCCAGATCTCTTGGGGTAGTAGCTTAACTGCTAGAC AGGTGATTTTGCCATAGCAAATGGTTCATTTCTTGATGTTGATTATAATTAGTTCGTCATTCTGTGACTACTGCACTCTT GTAAAATATCATGCGTTTTAATTTCAAGAAATCGTACAATGTATATAACTACTACTTAACTACATGTCTTCCATTATTTC TATGTAGTAACGAGTAATATAAGTTCATGCACGGTTCTAGTATAGATTTGACGGCCTTCATTAGATTTTGCCGCGTTTAG TGGTTTGGTCGTTGAATGACATGTTTAGAAAATGAATCTAGACTCTACCTGACAATTATGAGATTATGATGCCAAGAGGT TGGCTCAAATGGTATGAGTGGACAATGTTGATGAAAAAGACTTGAGGTTTAATTTCTGCTCCAGGTCTTTCATTAGTACT CTGTAGGTTATCAGCCATCAGATATCCTGACCTGGGATTAGAGCAACTTCCCCTTCCTGTAAACTTTCATTCACCGTAAC GTAGGTCATGAGATTGTTATGATATGTGGTAAAATAAGGAAACATACGATAAGAATGAAAAGATCAGCTCAGTTAAAATT AAGGTGAGACAGTAAAATTTTAGAGGGTAACATGTGCATCCCCAATGTGTGAATGAATATGAATGAGTATTATTATCTCT GATCTGCTCAATAAGATTAGCTCTAATCAAAATTTTGAACGGAACAATTCCAGGATGTACCTGGTGGCTGGGGGCAGCCT GTGGATCCAAATCAATGGAATGCCTACTATGCATATGGACAAGGTTATGAAGCATATGCTTATGGAGCTACTCAAGATCC TTCCTCATATGCATATGGTGCATATGCTGGTTTTGCACAATATCCTCAACAGGTAAAGATCTTAAGTTTAGTTTGCATAA TAGTTCCTGCGGCTTAGAACAACTTTATCGGGCAACTCATGGATATTGATTTTATAATTTTCAGGTTGAAGGTGCTCAAG ACATGTCAGCTGTGTCTATGCCTACAGAGGAGCTGTATGATCCCATGGCAATGCCTGATGTCGATAAGTAAGCTTTCCCC CCCTTCTCCCTCTCCTTTTTCCAATCAAAAGTTGGCTTGATTAAATATCCGCTAGCCACTTCAAGGTAAAAAGTGAAGTT AACGCTTATAGATTGGGATAAAAGTTTGTTACCATTGCAGTCAACTGGTATCCAAACGAACTAATATGTGTATAGGCTTG ATCAGATGTTTTTGTGTATTGGCCCCTGGTGTTTTTATGACTGAATTTTCATTGCTTTGCCAGGTTAAATACTGCATATG TTTCAATACATGGAAGCGCCATTTTAGGACGGTCCCTCTGGCAGAAAACCTCGCCGTTTTTGCAGCAAGCTTAGGATCTA TTTGTACTACATGATCAATCTTAGGCATCAACTCTTCAAAATATAGCCTCCAGTAGACATAGCTTAATTGGATGGACTTC AACCTATGTTAGAAACTGCGAGTGAAGATCTGGCAAAGGTGAGGCAAGGCCTCCTACTCATGGAACTTGTTGGCTTCTAA GTTGCCTTAGGTGGAGTTTGTTGTACTTTATTTCAGGCAGTTTCAAAACTGCTGTAGAATATGACTGTGTCTTTGTTATA TCATTTATTTATATTTGTCTGCTTTGCAATGAATACTAAACGGAAACTCATTTTCATATGGAAAAAGAACATCAAAGGAG CTTTCTACATATTATATATCGTCCAAAACAACGACTTTTTGTTACCAGTTGTAGAAAAGAAAGAAACTACATAGAAATCA AAATATGAGGAAATAGATATGCGTAGATACCTTTTTTCCCGCTTAGATGCACTGTAAGTCTGTAATTCAAACATGCACTT AAGAACAAGTCAAGTTGAATTAATCTCGAAACAGTTTCACCATTGTTTAGCCGTAGACCTTTTGATGAATTGCTGTTCAC CAAATTTTTTCTTTTTCAATATGGGTAGAATAGTATGATAATTAGATAAGTGAGAATATCAATTAAGACAGGCGGGATAT TTTTATTTTTATTTAGTTTAGGATTTGATTTATAGTCTTTAAGTATCTTCCTGGCATAATCTAAGCCAAACGACACTTAC AAGCAAAGGGTATCAAACCTGAAATCCAAACTAAACAGACCAAAGACTAAGCAAACCACAACAAACAAACAAGTAATCTC TATTCAAACTTGACCTGCTCTCAAAGCGAAAATTTAATCTTAGAATTTTTATGTCGCTTTTAGCCTAGCCGACTTTGCCG GTACCGCAGATCAATTGCATCTGCTTCAAGGCTTTCACCAAAGGGTGCTCATGAGACACCACCACAAGAACAGAGAAGAG CAGAGGGCAAGCCATAGGAGTGAGATGGAGTGCGCAACGAAACAGGACCAAGGGGAGAGGCAGTGGCCCACGACCGCGGG CGGTGATCTCGGAGGGTGGCTGGTGGCTGACGGTCGCGGATGGTGGTGGAACGACCGGTGGTTGCAGATCTGGTCTGGCG AAGCCAAGGGTCGCCGATCTGATGAAAGGGGAGGAGAGAAAGGTAGGACGCCGAAGGTCTGGTCGCTGACGGCGAGTTTG ATTGTGGGCTCAGATCTGGTAGTGCCTGGAAGAGGGAGGACGGTGGTGGCAGTGGAGGGATGGTGGTGGTGGTGATGAGA GGACGGTGGTGGTGGTGGTGATGACCAAAAGCAAGGAGAAAGCAAAATAAAACCCCACTTATTTGGGTAACTAAATATGA TCTGCTTGTTGATGATCTCTTCAAGCCCAGAAGGACAAGGAGCAACCCCAGATAATCATAATTGTAAGAGACCTCAAGCA GTTGAAACTTGTTTAGTGTCCATGGAGGATACCTATACCAAAAACCACTCAGGAAACTTCTTTTGAGAATCCCCTTCTGA TGGCTGAATGTGTTAAAGGAGAACTTCCCATGATAATTGCCAAACCCACTTTCACCCACTCCTCCAAACGGGAGAGAATC CACTGCATACTACACACAACAAAAATATAGAACAGGTCATGTATATGAATAGGAACTAGCTGTATCCCAATTTGATGTGT GTAAAAAGATTATCAGTAAACACTGGACTGGGGAGGCTATTACTTGTAGAATTGCATCGTTGAAAGTTAAACTGCCAGAT GATGTTTCAGATCTCATTCTTTTCTGCAGTGATTCAATTTTGGTGAAAGCATAAAGGGCTAGAGGCTTAGGCCTGGAGTT TATGAATTTAATACTGTCCTCAATCTTCTCAACCTGCAAATTTTTAATGGAAAAAAAAGGAACTCATAAGGCTAACAAGA AAAATAGCAAAATTCTAGAGTCTCATGTGTTTGCATTGCATGAGTTGAAACTCACAGTAATAATTGGAAGCAATGGGCCA AAAATTTCTTCTGACATGATTGCTGCATCAAGTGGGGGATCCACCAATATGGTTGGCTCAATAAATCTGCGTACATTTTA GCACATTTTCTAAGTATTTAGCAACTATTGTGAGGAAGTGTTGAATGCTTACAAGTTTTCTTCATCTATGGAGCCACCAT AAACCACAGATTCTTTGACCTTTTTATCAGTAAGAAGATTCTTCAATCTAAGGAAGTGTTGTTTATTAATTATCCTTGCA ATAGTGTTGGATTGTTTCGGGTTCTCTCCAAACATTTTCTTGATCCAGACCTTTATCAATTTCACCTAAACATAATATCA AGAAACACAGAGAAGTGAAAACTGGAAGGTGGCGCTTTCGTTGACAGAGTGAAAATGAAGCTGCAATTATGTGATTATAA ATAAAAAGATTTCTGTAAAGCCAAACAAATCCTTAAATATCAAGAGAGTTACCAGTGTTGAACAGAATCTATTTTCCACA AGTACATAGTCGATCGCAATGCATGTTTGACCAGCACATGACCCAAATTTCCCAAAAACAATCCGCTTCACAGCAACCTA TTGGTTCCCACAAAGTATCACTCTCTTAACCAAAATCAATAATCAACATAATAATAAACAAGGTGTTTATTTTTATACCA GTTAAATAAAATTTGAACGAAATTTCAACTCAATTCATAAGAAGAGTTTCATTTAGTTCTTGAGGGCTTGAGCCGCGCAT ACTGCAGTTTAAATTTAAGCGTCACATGAGTACTTCTCGTCCATTTTAGTCACACTTACTCAAGAGACATTGGTATGATG ACATGAACCACCAAGAATGAATCAACTCACCTCTAAATCCCAGGAAGATGAAAGGGAGTCAACAACTGCTGGGTTTTTCC CACCCAACTCCAGAGTGACAGGGGTCAGATGCTTCACAGCTGAAGACATTACAATCCGCCCCACACGCGCACTTCCTGAT AATAGTTTTTCAGATTCACAAAACTATCATCAAAAGCTATTACAATTACAAAACATGAATGAACAAGAAGATATAAAAAA GGGATCCTATTAACCTGTAAAGAATATTTTGTCCCATCTTTGCTGTAGTAGTAGCTCAGACTCCTGTGGTCCACCTTCAA TCACCTTAATGGCTTCACTGTCCAAGTAAGTGGCAAGAGTAGAGGCAAGTAGAGCAGAACATGAAGGAGTTAACTCTGAA GGCTTTAAGACTACTACATTCCCAGCAGTTACTGCTCCTATCAGTGGCTCTAGAGACAGTCCTGTGTTTGTTTTTCAAAT GATAGGTTCAATGTTGCTTCATATATATATTTAGCCCAATGAAGAAAGTAAGAAACCTCTTAATTAACTATAGAATATAG ATAGCCATGAACCATATTTGTTAATACTAACCAACAAGTATATAATATAACTCACCAAAAGGGTAATTCCAAGATGAAAT TATGAGGATGAGACCCAGAGGTTCAGGAACAACTTCTGCACTTGTTAGCAGTACTAACTTTGGTAATTTAGCCTATCATA ATGAATGTTTCATGATTAGTCAAACTTTGGTAATTTAGCCTATCATAATGAATGTTTCATGATTAGTCAATTGACATGTA TATATGCCGAAAGTCGGATTTTGGCTCCTCTAAGAGATTCATTTTAGGGGGTAAAGTGAGTTATCACAATCATTAATAAT GATTACTTATTTTGAAAAGTCACTAAAGATACTCAACTAATTATTGTGATGACTTACTTTATTCTCTAAAATGAATCTCT CATTTTAGAGGATTCACCCCTGGAAGTCATACTCATATAGACTCATATTTTCTTCAAAGGCTTATTTGCACTTTTGGTCC CTGATGTATCACCTTTATGCGATTTTCGTCCCCGATCTTTAAAACGAGCGATTTTAATCCCAAACGTTTACATAATGTGC AATTTTGGTCTTGCCGTCAATTGAAGACGGAAAAAGCTGATGTGGCCCTTTTAAATGATGTGGCACCTCTAATTAATTTA AAAAAAAATATTAAATAAAAAAGTAAAATGTTTTTTAAAAATAATTTTCTTCTTTCTTCTTCATCTGCTCTCTTCTTTCT TCTTCTTCCTCCTCCTCCATAACACCACCCCACCACCATCTCCTCCTCTTTCTCTAAAACCCATAAAACCAGAGAAGAAG ATGCCACTGAGAAGAACCAGCAAACAAAAATAAAACCCAGAAACGCTGCACAGAAAAGACATAGAAACAAAGGAAAAACC CAGAACTAGCAAATTACGTACCTAGAACCAGGAAAGAAAAAAACCCAGAAAAAAACCCAGACTTCATCTTCTTCCCATCA TCATCATCTAAAGCACACCTAAAACAAACCCCCAAAACCAAAAAACATCGAACCCCCAAAAACCCAAACTTCATCTGTAG GTTTCTAATAAATAAGGATTTGTTCCTAACCACATGCTTTTCTACCCATATAGAAAAT
CDS sequence (LotjaGi3g1v0493100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAACTCCGAGCGGTGAAGTACGAACCCTTTGGGTCGGAGATTTACAGTACTGGGTCGACGAAAACTACCTCTCTCA GTGCTTCGCACACACCGGCGATGTTCTCTCCGTCAAGATCATCCGCAACAAGATCACCGGCCAACCGGAGGGCTACGGCT TCGTCGAGTTCGTCTCCCACGCCGCCGCCGAACGCGTTCTCCACACCTACAACGGAACCCTCATGCCCGGAACCGAACAA CCCTTCAGACTCAACTGGGCTTCTTCCGGCGGCGGCGGCGACGCCGGCCCTGACCACTCCATCTTCGTCGGCGATCTTGC CCCTGACGTCACTGATTTCCTCCTCCAGGAAACTTTTCGGACTCATTACCCTTCTGTTAGAGGCGCCAAGGTCGTCACCG ACCCCGTCACCGGAAGGTCCAAGGGTTACGGGTTTGTCAAATTCTCCGACGAGGCGCAGAGGAACCGCGCCATGACTGAA ATGAACGGCGTTTATTGCTCCTCTCGTCCAATGCGTATCAGCGCTGCAACGCCGAAGAAAACCCCTTCTTTTCAACAGCA ATATGCTCCAACCAAAGCAATGTATCAATATCCGGCATACACTGCCCCAGTTGCCCCAGTGAGTGTAGTTGCACCAGAGA ATGATGTGAATAATACTACTGTTTGTGTTGGTAATTTGGATCTTAATGTAACGGAGGAGGAGCTTAAGCAAACGTTTGTG CAGTGTGGGGATGTTGCGTCTGTCAAAGTTCATGCTGGCAAAGGATATGGTTTTGTTCAATTTGGGACTAGAGCATCTGC TGAGGATGCTATTCAGAGGATGCAGGGGAAGATGATAGGTCAGCAAGTGGTCCAGATCTCTTGGGGTAGTAGCTTAACTG CTAGACAGGATGTACCTGGTGGCTGGGGGCAGCCTGTGGATCCAAATCAATGGAATGCCTACTATGCATATGGACAAGGT TATGAAGCATATGCTTATGGAGCTACTCAAGATCCTTCCTCATATGCATATGGTGCATATGCTGGTTTTGCACAATATCC TCAACAGGTTGAAGGTGCTCAAGACATGTCAGCTGTGTCTATGCCTACAGAGGAGCTGTATGATCCCATGGCAATGCCTG ATGTCGATAAGTTAAATACTGCATATGTTTCAATACATGGAAGCGCCATTTTAGGACGGTCCCTCTGGCAGAAAACCTCG CCGTTTTTGCAGCAAGCTTAG
Protein sequence (LotjaGi3g1v0493100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTPSGEVRTLWVGDLQYWVDENYLSQCFAHTGDVLSVKIIRNKITGQPEGYGFVEFVSHAAAERVLHTYNGTLMPGTEQ PFRLNWASSGGGGDAGPDHSIFVGDLAPDVTDFLLQETFRTHYPSVRGAKVVTDPVTGRSKGYGFVKFSDEAQRNRAMTE MNGVYCSSRPMRISAATPKKTPSFQQQYAPTKAMYQYPAYTAPVAPVSVVAPENDVNNTTVCVGNLDLNVTEEELKQTFV QCGDVASVKVHAGKGYGFVQFGTRASAEDAIQRMQGKMIGQQVVQISWGSSLTARQDVPGGWGQPVDPNQWNAYYAYGQG YEAYAYGATQDPSSYAYGAYAGFAQYPQQVEGAQDMSAVSMPTEELYDPMAMPDVDKLNTAYVSIHGSAILGRSLWQKTS PFLQQA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 349 | 345 | 1.1E-146 | – | |
| PANTHER | 5 | 349 | 345 | 1.1E-146 | – | |
| SUPERFAMILY | 6 | 90 | 85 | 6.38E-22 | ||
| Gene3D | 8 | 88 | 81 | 4.8E-25 | ||
| ProSiteProfiles | 9 | 89 | 81 | 15.784 | ||
| CDD | 10 | 86 | 77 | 2.51171E-46 | – | |
| SMART | 10 | 85 | 76 | 3.9E-15 | ||
| Pfam | 11 | 79 | 69 | 5.8E-14 | ||
| SUPERFAMILY | 97 | 188 | 92 | 1.22E-22 | ||
| Gene3D | 98 | 175 | 78 | 8.0E-23 | ||
| CDD | 99 | 177 | 79 | 4.81031E-51 | – | |
| ProSiteProfiles | 99 | 178 | 80 | 16.841 | ||
| SMART | 100 | 174 | 75 | 8.6E-20 | ||
| Pfam | 101 | 170 | 70 | 2.0E-15 | ||
| SUPERFAMILY | 200 | 317 | 118 | 1.61E-26 | ||
| Gene3D | 207 | 296 | 90 | 1.3E-23 | ||
| ProSiteProfiles | 219 | 291 | 73 | 16.295 | ||
| SMART | 220 | 287 | 68 | 4.1E-20 | ||
| Pfam | 221 | 284 | 64 | 2.3E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0493100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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