Transcript — View — Lotus Base

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LotjaGi4g1v0034500.6

Overview

Field	Value
Gene ID	LotjaGi4g1v0034500
Transcript ID	LotjaGi4g1v0034500.6
Related isoforms 6	LotjaGi4g1v0034500.1 LotjaGi4g1v0034500.2 LotjaGi4g1v0034500.3 LotjaGi4g1v0034500.4 LotjaGi4g1v0034500.5 LotjaGi4g1v0034500.7
Lotus japonicus genome version	Gifu v1.2
Description	myosin; TAIR: AT5G64180.1 tropomyosin; Swiss-Prot: sp\|P03736\|TMP_LAMBD Tape measure protein; TrEMBL-Plants: tr\|A0A072UNE2\|A0A072UNE2_MEDTR SKIP interacting protein; Found in the gene: LotjaGi4g1v0034500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:4182813..4183386) extracted from Lotus japonicus Gifu genome v1.2.

AATCGCAAGGAAGAAAAGATGGAAGATAAAGAGAAAGGGGAACGATGGAGCGGAGCGATGACGAATCTATCAGAGATGAG TTCAAATCTAGAATCACTCCACAAGATTCTCCTCACCAAAGCCGTCTTCGTCGACGACGACACCTTCTCCAAAGCCTCTC TCGCCGCCGATCAAGCCCGCACCATCAAGCTCCTCGATCAACGAGTCCACACCTTGGAGCGAGACCTCGACGCCGCCATC ACCGCCGCCGCACGCGCCCGCTCTGAGAAGCGACACGCCGAGAACGCTCAGAGAGCCGCTGAATCGCGCGCTCTTGAGGT CACCAAGGAGCTCGAAAACACCACGAGTACGCACTCGCACTCCTCCTTCACACCACAACAACTACTACAAACCCTAACGA TTTCTGATTTCTGATTTCTGATTTTTGTTTTTGTTTTCAGAGGTGTTTCAGCTGCATATGGAAGAACTTCGTGCGAAGCA AGAAGAAATCGCCAAGCGTGATAGTGATATTAAGCTTCTGGAAGCGATTATTCAAACTCTTGGAGGAAAAGAATCGATTT CTACATCTCTGTAA

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CDS sequence (LotjaGi4g1v0034500.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGATAAAGAGAAAGGGGAACGATGGAGCGGAGCGATGACGAATCTATCAGAGATGAGTTCAAATCTAGAATCACT CCACAAGATTCTCCTCACCAAAGCCGTCTTCGTCGACGACGACACCTTCTCCAAAGCCTCTCTCGCCGCCGATCAAGCCC GCACCATCAAGCTCCTCGATCAACGAGTCCACACCTTGGAGCGAGACCTCGACGCCGCCATCACCGCCGCCGCACGCGCC CGCTCTGAGAAGCGACACGCCGAGAACGCTCAGAGAGCCGCTGAATCGCGCGCTCTTGAGGTCACCAAGGAGCTCGAAAA CACCACGAAGGTGTTTCAGCTGCATATGGAAGAACTTCGTGCGAAGCAAGAAGAAATCGCCAAGCGTGATAGTGATATTA AGCTTCTGGAAGCGATTATTCAAACTCTTGGAGGAAAAGAATCGATTTCTACATCTCTGTAA

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Protein sequence (LotjaGi4g1v0034500.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEDKEKGERWSGAMTNLSEMSSNLESLHKILLTKAVFVDDDTFSKASLAADQARTIKLLDQRVHTLERDLDAAITAAARA RSEKRHAENAQRAAESRALEVTKELENTTKVFQLHMEELRAKQEEIAKRDSDIKLLEAIIQTLGGKESISTSL

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR36080 View details on PTHR36080 Search for proteins/transripts with this domain View external data on PTHR36080	2	151	150	7.2E-79	–
PANTHER	PTHR36080:SF1 View details on PTHR36080:SF1 Search for proteins/transripts with this domain View external data on PTHR36080:SF1	2	151	150	7.2E-79	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	63	97	35	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0034500.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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