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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0104800 |
| Transcript ID | LotjaGi4g1v0104800.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein, putative; TAIR: AT4G36960.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1; TrEMBL-Plants: tr|I3SUR9|I3SUR9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0104800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:14589013..14598036) extracted from Lotus japonicus Gifu genome v1.2.
AAACAATCTGGTTGCCTAACGGTTCGGGTAAATATCCGGTTCATTTCTAAACCGGGTCCGTTGATTTCCCCTGAGAAGCC CCAAATTGAACTGACACGAGAATAGACAAGGTACGGAGCGAGCTAGCGAGAGAGAGAAAGACATTGCCAGATCTCTGATT TAGGGTTTCGATTTTCCCCAAATTCCCAAGGTCAGTGAGCGCGTAATCCACTGAATTTCTCGCAATTCCTATTTTTCTTC GTTTAATTTTATTTTTTGAGCTGTAATTGGAACGCAACGCAGTTGAATTTGAAGCCCCAAAAAGCTCAATTTTCATCAAT GGCGACAAAAATTGTGTGTGAGAAAGAAATGTTGTTGTTATGTGCAGGGAGCGAAGAGTGTGTGAGATTTAGAGAGAGTG GTGTGAGAACGCTGAGTGCTCTTCTGCGAGATTCCCAAAGACGAGGTCGAGAGATTTTGAGTTTTCTTTTTCTTTTTGTT GCTGCTGTTTCTTCAAATTTTAGGGTTTTCAGATTTCTATTGTGTTCAAGTTTCCCATGGAGCAAAGGAAGCTTGTGGTT AGTTATTTATTTATTCCTTTTGCATTTTATATTGATTTGCTTTTCAATTGCAAAAGTTCAGATTCTTAGCATCTTTTTAA TTTGAATTTAGCTTATTTGTTCTCATAAAAATTGCATTTTAGGTTTTGGGTATCCCATGGGAAGTGGATACTGATGGCTT GAAAGAATATATGAGCAAATTTGGTGAGCTGGAAGATTGTATTGTTATGAAGGTAAGCCTCTTTCCGTTTGTCGATTATT GATATTACATTTTTGATTTATGATTGTCTACCATATCATGATGCTAAATTTGTTGAATGTTTCTATTACATTCTTCATCG TTCATTTGTATTTGTGTTACGTTTGAAGATAATAAGTGATATGCTTTACCTTGTTGTCTCACACACACACCATGGATGAA AGGAAGAATAAAAAAAAATCTACTTGCGTTATGATTTATGACATTTCTGGAGGCACATTTTGATCTACTTACATGTGTGT TTAGGAGCGGGCAACTGGTCGGTCTCGAGGTTTTGGATATGTTACATTTACATCAGTGGATGATGCTAAGGTAAGTTCAT TAACACATACAAACACGGATAGCTGGTATATGCTAAGTTAACTCCTAGTCCTATAAGCTTTATCTAAACTTGGATGTCCT TCTGGCTGCAGAATGTATTATCCATTGAACACAATCTGGGTAACAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGTT TTAGTCAAAGCAATGCATAAATATAGAGTCATGTGTATTTATTTATAGCCTGGCTTATGGCTGGTGTACTTATATGAATA ATCATGATAATATTGTGTGATTTCACTACTGATTTTGCTATTCATTCTAAAGGAGGAGATGAAGGCACCGGTAAAAAAAG TTAACAGAATATTTATAGCCAGAATCCCACCATCAGTAACAGAAGCAACCTTCAGAAGGTATATGAGTGTGATTCTGTAT TGAAAGAATTAGGAGTATTTTTTGCTGTGATAAATTTTACGATATACTGACTGATGCTGAGGAAATTGGTGTACTACTCT AACATTTTTTCTTTGCCTTTTTCCTTATATTCTTTGCAGTCATTTTGAGAAATATGGTGATATTACAGATCTATACATGC CAAAGGTACTTTCTCCCATTTATTGTCACATGTGTAAAGTTTTGATGTAGTTGGCATGCATTTAGGTGTGCTGTGTACAT ATGCACATAAGACAATGCTAATTGCAGTTAGCAGTTATACAAATTTACTAAACACTTCTCCATATATTATTTGTCTTTTT TTTTTAAATTTTATATAGCTTATCATTTATTCCCAACAGGATCAAAGATCAAAAACGCATCGTGGAATTGGTTTTATCAC TTATGCAAATGCAGGTTGGGCCATCTTTTTCTGCGTGTTTTAAGTTTATGGATTTTTCATATGTTTATAATCCTTGAATT TCAATTTATTTAATTTAGATAGTTAACTAGGATCTTGATTAACATTGTCAAAACTCAAAAGGGGAATTTTGTGTGTACCA TGGACAGGGTTGGTATGCATTTTTTTTTCCTCTACAAGTAAATAAAAGGGGTTTAACTTTTAAATATTAAAATGCCTCAT TGCTTTCATCTTGTTTTTTGTTTTCAAAGATTTGTATAGAAAATTGTAAAAAATCTATTTGAAAACAGGAAATAAAATGA AAATATGGTGGCATTTTGTAAATAAAATTTAAAACAACAAATGAAAACAAAAAAGTTTTCTCATAGGTTTTCCACATTCC CCCTAATTCAAGTGGCTTTGGAATTTTAATATTAACAAGGTGCTAAGTATAAGGCTTGATAATTTCTCTCTTCATTTGTC ATATTTCGTGTGTTACTTCTTTTACTTCCTATGAGAGTTATATGTTTATCTATCAGTTATAACATTTTGGGATAGCTTTT GGAGATAATCTAACTGATGCTTATGCTACAGTCATAAGAGATCTGTGAATGTCCTTTCTGTTTTGTTTTTACCATAGTCT TAATTTTGAAAGAACTGGGAAGGATATATGATATATCAAGACTGTAAGGAAGATGTTTGTGTTGCAGATTCTGTAGAGAA TTTGATGAAAGAAACCCATGAACTGGAAGGTTCTACTGTGGTCGTTGATCGAGCAACGCCTAAGGCAAGATTATTTAGAG CTTATTCTTTTCTGAAATAGTTAATGTGTTATTATGGCACTTTTCTTTGCCCCTTTTGTTAAAGTTATTATCTGTTTGCA ACGAGCATGTATTTAGGGTTGGCTATAAGAGACCTATGATCTTGCCTATATCAAGCCCAGGAAAGACCATACATTTTACT AAATAAATCAGGCAATGGCTTTTTAAAAAACTATTTAGTTAAAAAGATCAGGTTTTAGGTCATTCAGAAAGCCATTTAGG CCAACCTTTTTTTTTGGAAGGAAACGTTCTGTAACACAATTAACTGGCAAAGACCTTACATCAGAGATAAGGATTAGTTC CAACCCAGAGGGGAACTCATCAATCCAAACAAAACGAGTAGAAATAGCACATTTGGCCATAAAATCCGCAGGCAAGTTAG CTGTTCAACCTTATAAGTAATTGTAAATGGTATAATGTTTTTTATTATTTATATAATTAATATATTAAATTTTTGTTAGA ATATCTTTAAACTATTTACCTATTGACTTGTTTAAAGATTTAAACATGTTAGTCTATATAAAGATTTAATCATGTTAGTC TATTTAGAGATAGACTTATGACCTGTTTAAATACTTAATAATGAAGTAGATTTTTTTAATAGTTTTTCAGGCCCTAAACT TTTAAAAGGGCTTTAACAGATCTTGAAATGGAGCCTATATCAAGCCAACTGGCGAGACTCAAACCTTGAGTCCGGGAAGT AGGTTAGGCTTATGCTTCAGAGCCCAATCCAGCCGCGTTTATTTCCATGCCTACATGCATCATGCATTACTCATAAATCC CTAGCTATATGCATATTGCATATAATATAAATTACCATTGTTATTGCCGCTAAAAACCTTTTATTAGAAAATGATATTTA ATTATTACGAGTACTGTATGAACTCATCATGTATTTAAGAGCAGTATAAAGTTTGCTTGCCGAAGATCTCTAAGTCTATT TTTCTTCTAAAGTGACTTTGAGAAAGTTATGCATTTTAATTTTTGTATGCATGAAATGCCTTACATATGATGAAATGCAT GAAACTTAATGCATGGAGAGCACCCAATTTGCACGTATTAATCACAGCTCCAAAACAATATATAGATCATTTTTAAATAA AGAAAAAAGATAATTTATATGGATAGATGGACAAAGATTTTAGAAAAGTATAAGAATCTTGTAGAGAAAATCAAGGAAAA ATTTGTTGGGGGATTTTTTGAATCATCTCATTATTAGTTAGGAATCATAGAAGATGAAGTGTTGAAAAGTCAAGATATAA TCTTGATGATGATCAAATTGAAGAGCTAGCAACCATGGTATATAAATCGAAATTGAGGGAGAGGGTGCAGTTCTGCTTCC CTTATTTGTTTCTTGGCCAATGATGAGGTTCGTGAACCCAATTATGCAACCGATCACATATTGGACATGAGTCCATATAA ACCAGTCACTTCGAAAGTATATATTCTAGGAGAAAGAGAGGGGTGTGAGCTGGATGGTAATTAGTGGATGATGTGGCATG TGGTGTGAGAGAGAGGAGTTGGTTAGCAGATAGTAGCAGTTTATAGGGAATTGGGCGAGGAGAGAGGTGTAAGAGAAAGT TACACTTTCCTGTTGTGAGCGGAGAGACTGGCTCTTTTTAGGAGCTTAGCTTTAGTGTCTCATGGTGTTTCCTTTTGTAT TAACTCTGATTTCTCTCCAATAGATCATTTCCAACCAGATTTTGTTTTGGTTCTCTATTAACCTACACCTTGTTCTTCTC CTTTCGTTATTGTGTCAATGGTATGATTACCCAGCATTTGTTTTGCTTGTTGCAAGTGACATGACATATTTGATGTTTAT TTTATTGTGGCTTAGACTAGCTAGTGTCACTGATTCAGGTTCTTATGATTTGGCTTTAGAAATGGTTAGTGTCTTATACT TTCATCTTCATAAATAGGGTGAAGAGTTTTGTGACTACTCTTATAACTGTTTTGTTTGTTTAGTTTTCACAACACCTAGA AGCTAAAATAATTCAATATTTTGTTGTGTTTTGTTGGTTAATGAAGGAAAATAACTCAATTATGACAATAATAGTGATTT TATATACATATAATTTAAGTGTAAAAAAAGACCAATGATGATGATTTTGGGATTCTATTTTGCAAATATAAGGACTATCA AGAATTGCATGCGAGATTCATTTTACCCCCCCACCCTTATTATTGATTATCGGTGATATCATTAGTGTTCTTATATTTAT TAATGCATATTTAAATAAAATTTCCTTTTGCATATTGCTAGTAATTGATCTCTTCTTAGTGTTCATGCATTTAGTTTTGA ACATTTTAAATAAGGCTTAACTGCACTTTTAGTCCCCCACTTTAATTAAATGTGTGATTTTGGTCCTTAACAAAATTTAT TAGCAATTTTCGTCCCTCACGTTTACTAACGTTTGCAATTTTGATTTTCCGTCCAAAACTGTTAAAGATTTAACGGTTTT CTGAATTTTTTTTAATAAAAACAAAAAAAAACAGAAATGAGGAATCTTCATCATCTTCATCTTCAGTCTCCATTCTCACC TTCTTCATTTCAGCCTCAAAATCACCTCCTTCCACTTCAACCACAAAATCCAAGCGACACCACCACCGTCGCCCCTCTTC CTCGTCCATCGCCGCTGGTCCTGCCTCCTTCACTCCCTCGACTTCAACGACCTCCGCCCTCGCTCTCGCCGCCATCGACC TCGGCCTCGTCTCCGTCACCCTCCTCTATTCCAATGGAACCCCTCCCTCTTCCTCCCCTGCAACGACGTGGTCTCCCTAG AGAGCTTCCACTCCCTCGTTTCCCACGCGCGTCTCGCTTCCATTGGACCCAGGATCTACGTCGTCCGATCTGAAGTAAGG GTGGGGTGATCGTTTTGGTCCGCTGGTGGTGGTTGGGAGAATTGCTCCGATCTGACCCGATTTGTGTGTTATGGGTTTTT TTGGTGAAGGGATTTCTGGGTTTGTTGGTTTCTGAGGTTTATGGGTTGAATGGTTTCTAGAATGAGGCATTTGCTTGATT CTTGTTACCGTGGGTTTTGCTGATTTCTGGGTTCGTCTTGCTGTTCTGGAATAATTAATTTATAGGTCTAAGAAGAAGGT AGAATAATTTCTGGGTCTTTTCTTTGTTTCCCAACCCAGCGATTTGTTTCTAATGTTCTCCATTTCTCTCTCGAAGCAGC GAGAGAAACACCTCCACTGCTCCACGTCTCTGGTGAATTTCGATGATTCTGCCTTTGTAGCCTTTTTCTCACTTCTCTAT TCTTTGCCCCTTTATGTTGTGGATATCATTGTTAAAAATTTATTTGTTAATCACTATTTACTATTTGGACATAACGAAGA ACAATTATACTTACCACATTGTACTGTTTTAATTAGTTAAGTTATTAGTAAACTTTGTTTGATTTCTCCAGTGAGAAATG CTACTCATGGGATAGTATTCAATGTCTGCTAGCTATGTTGTTCGGCCTTATGAATTGGTCTTATTCAACTTTCAGAAAAA GAAGAAGAAGGTGAGCATGGAGGTTGAAGATGAAAATTCATCATTTTTGTTTTTTGTTTTTAATTTTTTCTCAGAAAACC GTTAAATCTTTTAACAGTTTTGAACGGAAAATCAAAATTGCAAACGTCAGTAAACGTGAGGGACGAAAATTGCTAATAAA TTTTGTTAAGGACCAAACTCACACATTTGATTAAAGTGGGGGACCAAAAGTGCATTAATTGGGCTTGTGATTTTACTAGT GGATTATAATCCAAAGATGTAATAATCAAACTGTGTGGTGGTGATGGCTAGTTGGTCCCAAGGCCCTTGACAATTAATTG AGGGGGTTAGTTGAACTCAGGCAGATTATTGGTCCCTTCTTAAATGAAATCAATGTAGCTCCTGTTTTAAATAATGAAAA TAGCTTTTTAAACTCAACTGGAAATCTTCTGTTTTATAATAAAATTAATCTTTTGGTCAGCTGAATTGTGGCTGCTTATT GGTACGGAAATGTAATTAAATAAACCAAGCAACAAATATTTCTATATAACTGTATGGTGTAAGTGTTCACTTCTCATTGC ACATGGAGATACATAAGTAACAAAGCAAGCCAAAACTGTAAATGTGTTTTATTTTTTTGTTATCTTTATTTTCTTTAGTT TGACTTTCGCTTATAAGATTGACCATTTTTGCAGGAAGATGATTTCAAGCCAATTGGGAGAATGCCACAGGGAGGATCAA TGGGGAGAATGTCACAGGGAGGATATGGTGCATACAATGCATATATTTCTGCAACAACTAGATACGCAGCACTAGGTGCT CCTACTTTATATGACAATCCGGGTTCAGTTTATGGAAGTAAGGATGCAAGCACTGATCTTAATTTAAAATTATTAATTAT TAATGTTGCTTCATAGTGATTACTTTATTTTGTAATTAGGGGGAGAACCTGCTCGTGAAGTGGGCAAAAAGATTTTTGTT GGTCATCTTCCCCAAGAGGCTACCACTGAGGATCTTCGCCAGTATTTTGGAAGATTTGGCCATATATTAGATGTTTATAT TCCCAGGGTAAGATATTAAAGAAAATGAATACAAATGTGTAGAGCACTAGAGCTGACTAACTCACCTGTTTATTTTGATT TAGGATGCCAAGAGATCAGGTCATAGAGGTTTTGGTTTTGTGACTTTTGCTGAAGATGGTGTTGCGGATCGCGTCGCTCG AAGACCTCATGAGATTTGTGGACACCAGGTACTGATTTTGGATTTGCTGTTATCGTGCATTACTACCCTACTTGCATGGC CTTTGTTTTCCTTTTTATTTTCCTACCCTCCTTTTGAAAAGGTCCTTTCTTGGTGCCAAGTATGAACTCAAGAGAGCTCA TCTAGTTAGCACCTCCTGTTGGAAGGGAACGAATCATAAAGTTTGTATTTGAGATTCTGTTACTGCCAACAGTGTCTATG TGACATTGCCTCGCAGTGCGTTGTAAATTATTGACCACGTGTTTGGAAATGCGTCAGGGAGTCGTGTTTGACTAAAAAAT TGCATGGATCCAAAAGCTACTGAGAGTAGCTTATTCATTTGAGAATCGATTCATCCAAACGAACATTTATTCGCAAATGA CCTGAATAGTCGATCTCTGATTACTGAAAGTGCAGATTCCTTATGACAACATTCTGTGATTGTCAGGATGAACTCCAATG GTCATTCTGTTTATTATGTATGCATGTGTTAAGACTGCACGAATCTGTTCATCTGAAACTAGAATTATCATGTATGCACT ATTAATATAATCACTGCAAGTATAAACATGTATTGGATTGATAAATAATCTGATTTCTTAACAAATTGCTGCTGCAGGTG GCCATAGATTCAGCAACACCTCTTGATGATGCAGGGCCCAGTGGGAATTTTATGTTGAATAGCATGGATTCTTTTGGGGG ATTTGGTGGTCCTGTGCGACCTTATGGGAGAATGTATGGCAGCCTAGACTACGATGATGTAAGTATAGTATAGAAAATAG AGACATTAAAGATTTTTTAACAAACACGTACGAGGAATGACAAGCCAAGAATTTGCATATTTCATGATTTTCTGGAATCT AAGGTCCTTCGAAAGTTTTTTTTTTGTCTTGTTCAGTAGTGTAAGTGAATTAATCTGCTGTATAAAATTCTCTGTTTTAT CATTACGTTTAAAAGAATGGATAATGTGTTTCCAAAGTAAAATATTGGAATATTGAATCTAGCTGCATGCTTCTAGCTTC TGGTCACACTATTATTATTATTATTATTGCTGTTGTTGTTGTTGTCATTATTATTATTATAATAATTATTTTTATTATTA TTACTATTGTTTTGCAGTGGGGTTATGGAGTTCCCAGGGGGAGGCCGCCATCAAGAGCGGATTGGAGGTATAGACCATAC TAAGACAGCATGGTTTTATTGGCGGCATTGCATTCCAAATGCTACTACTACAGGTTTCAGGAACTGTAATGCAGGTTGTC CTATTGAGAATAGTTTTAAATTATTATAAGCTTTATGAATTCGATTACTTAATCTATTGTAGACCAGATAAATTCTTCAT GTACTTGAACTTAATATTGTATGATTGAAGATTGTGTCTAGTTGTAGTGCATATATTATGAAAATATATTGGCGACTGTT ATTCATCTATGAAGGCATTTCTTGATATTTAATTTACTCAAGTTCTTCAAACGCACTTTTTGTTCTAAAACATTTCACGC GCATTATATATTTATGATATTAGATTTTGGGAGGCTCGTATTTCTAGTCAATGTGAGATTTCTC
CDS sequence (LotjaGi4g1v0104800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCACAGGGAGGATCAATGGGGAGAATGTCACAGGGAGGATATGGTGCATACAATGCATATATTTCTGCAACAACTAG ATACGCAGCACTAGGTGCTCCTACTTTATATGACAATCCGGGTTCAGTTTATGGAAGGGGAGAACCTGCTCGTGAAGTGG GCAAAAAGATTTTTGTTGGTCATCTTCCCCAAGAGGCTACCACTGAGGATCTTCGCCAGTATTTTGGAAGATTTGGCCAT ATATTAGATGTTTATATTCCCAGGGATGCCAAGAGATCAGGTCATAGAGGTTTTGGTTTTGTGACTTTTGCTGAAGATGG TGTTGCGGATCGCGTCGCTCGAAGACCTCATGAGATTTGTGGACACCAGGTGGCCATAGATTCAGCAACACCTCTTGATG ATGCAGGGCCCAGTGGGAATTTTATGTTGAATAGCATGGATTCTTTTGGGGGATTTGGTGGTCCTGTGCGACCTTATGGG AGAATGTATGGCAGCCTAGACTACGATGATTGGGGTTATGGAGTTCCCAGGGGGAGGCCGCCATCAAGAGCGGATTGGAG GTATAGACCATACTAA
Protein sequence (LotjaGi4g1v0104800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPQGGSMGRMSQGGYGAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGH ILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARRPHEICGHQVAIDSATPLDDAGPSGNFMLNSMDSFGGFGGPVRPYG RMYGSLDYDDWGYGVPRGRPPSRADWRYRPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 40 | 191 | 152 | 4.7E-63 | – | |
| PANTHER | 40 | 191 | 152 | 4.7E-63 | – | |
| Gene3D | 51 | 135 | 85 | 5.1E-22 | ||
| SUPERFAMILY | 54 | 154 | 101 | 2.28E-21 | ||
| ProSiteProfiles | 55 | 131 | 77 | 16.142 | ||
| SMART | 56 | 127 | 72 | 5.3E-17 | ||
| Pfam | 57 | 111 | 55 | 2.8E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0104800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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