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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0157400 |
| Transcript ID | LotjaGi4g1v0157400.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | cyclin-dependent kinase inhibitor; TAIR: AT5G40460.1 cyclin-dependent kinase inhibitor SMR3-like protein; Swiss-Prot: sp|Q29Q81|SMR6_ARATH Cyclin-dependent protein kinase inhibitor SMR6; TrEMBL-Plants: tr|I3SKX4|I3SKX4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0157400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:27440950..27445937) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTTTACCAAAAAATCGTTAAATCCCTTTTTTCATCGTAAAATTCTCTCTATCGATCGCATCTCGCATTCTCGCTCCA TCAATCCGCATCTTGCTCCATCGATCTGCATCTTGCTCCATCGTTCGCATCTCACATTCTCACTCCATCGATCCGCATCT TGCTCCATCGATCTGCATCTCGCGAAGCTCCATCGATCTTCATCTCGTGCAAGATCGAGCACACGAACTGCTCCTGCTTC AATCGACCAAGAGATCAGTTCTACCAATCGAGCTTCACTCTTCCCTTAGCTTCAGTTCTGTTAATCGAGCTTCACTCTTC CCAGGTATGCGTGCTATTGAAATTAGGTTAGTTCTGCTAGGCATTTTGAGTAACAAGAATTGAAGCGCTAATGAAATTTG GTTAAAAATTGTCTGGAATATCATCTCCTATGCATTTAGGACCATGAAACTTCTTTAGTTTATGAGGAATCAGTGTTGAT GGTATACTTTCTGCTATATCATCCCCTAATTTGGTTAGTTTTTCTGTGTTTTCCGTGCTTTACTCAATTAGTTGAGGATA GTTTATTTGATTTGGTTGCTGAACATGGCATGCCCTGTGTATATGTACTGTTTGATCTATTAATCTGTTTTGATTTGAGT ACAAAATTTTCCACATTTGAATTGCATTTCCTTTGGTGTTTGAACATGTCATAAGCTTGCAGTGGCAGCTAAATTACCAA GATATTCGACCAAACTTAGCATTGGTTTCTATAACATAAAGTACCTTTCAGCTATTGACCAGAAAATTTGAAAAATAACC CCTTTCTGTGAATTCTTGTATTTTTCTAGTTGTAGTCCAATTTGGAAAAGCCTTTTAAGGGAAGTGATTTCTGTTCATAG CATTCTTTTTCTCTAATTTCCTCAATTTTTATTCACAAGAGTCCACACAAAGTTTGTTTTAGTATAAATAACTATTCTGA GTTAACTGCTTCTTTATCAATTTATATTCTCTTGTTGAATCTGCTTCTTTATCAATTTCTAAAGTTTCTTTGTCTTGAAT TGTGCAGCACTGCCAAAAGCATCTCTCTACCCTTACATATATTTTATGGCAAGTTTGATAATTGACACAGTAATCTACAC ATCTCTAATTTTGTGAGATTTCACTTCTTGGAGGTTACTCTTAATACCATATTTAATTCTGGAACTTTCAGTTCAGTTTT AGCTTTAAATCTATTTAAAACTAATTAAGAATGTAGTTAAGAAGTCGTGCTCTTTATGTGTGCAGTGGACATAAGTTCTT GAAATTGACTGCCATGAACTGAAACTAATATGGAAAAAGTTTTGATCACCACCCAATTCCACCTTCACCAAAGAGAGATA TAGGAATAAGAGTATCATGCATGGCATGAACTTACATAAACTCCTCTCCAAATCATAGCTAATCCTCTGAAGCATTAATC GTAAAATTTTATTGAATATACAAAACTCCATTCACTATTTTCCCCAACTATAACAACTTATATCTCCCACAATATAGTTT TTGTCTTAACAGATATGCAAATTTCAGTTTCTTATGGCTTTTCCTCTTCATTTCTAACTTGTCAAGACTCAAGAAACAAA CTATATCTGAATGCAACCTTAACTATAGTTGCATACACACGGAGAGTTGCATATGACACCCTCCGGTCACATATATAAGC AAAAAACACTTTTTAGATACATTCATTAAATGAATGAACCTAAAAAGTGTTTTTTGCTTATATATGTGACCGGGGGTTGT ATCTATCTATTTTAAGGTAGACGATTTCAATGCAAAAAGAGAGGAAGATGTAAGTGCATATGCTGGTTAAGTGGTTATGT GGGTAAGATAACTTCTAGAACTTCGTTTTTTGTCTTCGATCATCATAAGATCGCTATTTGTTCTTATATGACCGTGAACT TGTTGTAGGATCGGCAGATATGCTTGGCAGAGCTTTGACAGCAGTATTATGGGGAATAATAGCTGACCGTTATGGTAGAA AACCCGTTATAATTACAGAGATCATCTCTGTGTAAGTATACATGTCACTGAGGTGAATCCTTTGGTTCAAGCTATACTAT ATGTGTTTGCCCCTAACGACAGTTACTTTGATTTCAGGATCATTTTCAGCACCCTTTTGGCCTTAGCACTAACTTTTGGA TGGCTGTGTTTATGCGATTTGTTCTTGAAGTTTAAATGGTTTGCTTGTTCCAATGATGGTACACACACCATCCTCCTGTT TCATCCCCTAAAATTGAAAGAAAGCTTTTAATTTGTGAATTTGGATATGAATTGATTTGTACATTATATGCATGTCTAAG TCACAACTTCCTCTATTGACAGGCTTATTGTACTGAAATATTTCGAGAAGAAAAGCAAGCTCTAGGACTCTCTACGGTAA GCCACTCTAACCTTCTCCTACTATCATTTCCTTATAGGTTTTCAGTTGGAGTTGGTTCAGCTAGTAAATAAAAAAAGGAG CAAATTTCCATCATAGTAATTCAAAATTTCATCTGATTTCAGTATAGTGCAGCTTGGGGCATAGGTCTAGTCCTTGGGCC AGCATTATTAAGTTATTTGGCTCAGGTACTTCTATATTATTTTCCTTATGATGCAAAAATACATTTAAGCATAGTCTTGG ATTTAGCATAAAGACATGAGATAACTTCTTTTGAGTGATATTCAATTTGAATCCATAAGCTGTACATTGAGAATGCTGAT TCCTAAAACTTAATGTGTAAATAATGGATTGAAAATGATACATTCTAGAAATCCTTCTTACATATTGAAACAAATTACAT CTTTCTTTTTTACTCTCTTACATTTTTTTTATCTAACACTTTGTGAAATTCAAATTGTAGCCAACATTGGAATACCCACA TCTATTTCCAAGTGATTCCTTTTGGGACAAGTAACTAGTTCTTTTCCTGATTCTTAGTCTACTAACCTTTTGGGACCAAA GATTTTGACATCTACCCTTAGTTGTCGTTAATTGTTGATGGGCGAATGCTATGTTGGTCGGTGATTTCAGCATATGCCTA AACTGACTCAATTTGGTTGTATGCCGACACTAAGTGGTGTTAGTCTTTCTGACGCTAAATTTAAGTGAGTTACGTTTTTA AGCTTTGCGTCGCCTTTTTCAACACTAAAATACTGATAGTGTTGGTGTTGTGGCCGACACTAATTTTTTAGGCTAAAGTG GCTCTTTCTTGTAGTGAACTTGGAGCGAAATCCATCGTGTATTCCACCTTTGGGGAGATTGAGGAGAAGGATTCGCACGA ATAGGCAAGCAACAAAGAAGTCCACCAAAAGAATCAAATACCACATTTTTACCAAACATTTGAAGACATTATGTTTATGA GTGCTTTCACTTATATAAGAATCACCACCACATGACCATTCTTCCTCTGAGTTGAAGCTATCCATACTTGTAGGACACAT CGCCTGAGCATCAGTGCAGAAAATATTTTCAATACAACATGTCGTTATCATGGTTGCACTCACCATAAACTCTAATATTC CTTATTGGCGGAGTGAAAGAGAGTTGAAAAAGTAGAACTTCCACCGATGACCCAAAAACTAAAATCCACCTAAGGAACCG AAAACCATAATTTTACACAAAACCTTATGACATTATATGTTGTTGTGTGACATCTTTAATATTATTTTAAAAGTTACCCC ACCCATTCTTATCTAATGTTAGAATCCAAGTCACACTTTTAATACCAAACATTACCCATATTAAAATTTAGCAAGCCAGA AACGAGTAAAATGAGAAGGGTAAAACAACTGCAAGTTGGTTGAAACTCAGGTAGCACAGTAATAATTTCGTATCTTTTAA AATACTTGTTTATACATGTCCTGCCTGATCTTCAGCAATTTTCACGGACACCCTCTATCTCTTCCCCTGTCACTATCTGC CTTCTATAATTCCACTCTTCTCTCTCCTTCCAAATTTTTTCTTCTTCTTCTTCCCTTTACTTAATGGTCTGTGACTCTCT GCTTATGTCACGAGTTTCCTCGGGTTCTCTCTCCCTCCCTTCACCAATTGGTTCCTTTCCATTTTCTAACCCCTTTTCTA AGTTCCAACACGCAACCCTCAACGTCACACACCCTCTTCCACATTAATTAATACCCTATATCTTACTATTCTTTTTCATT CATCTCTTTTTCTCTCTTGATATTCTGAGTCTTCTCTTCTCTTATGCTCTGTCTCCTTCACCTTTCAACCAATCAACCAC AGATCAAACATCCCCTTTATTCTCCTCTACTCATCATTTTTATTTCACCCTTTTCATCAGTCAATACTTTCCCTCTGCTT TGATTTTATTCCTTAATTTGTGTTCACACAAAAAATCATCTTTATTTTATCCCCTGCTTTATATACTAACCCTGAAACAG AGCTTTTGCTGTTTTGTTCCATATGGGGCTTTCTGAAAACGTGCAAGTAGAAGGAGCCTTTGAATCAGATAACAGAAAAT GGGTAATTGCTGGAATTGCTTTACGTGCACCCTTGAAGCCAATATACACTGCACATGTGGAGAAGGAAATCAGAGAAGAC TCTGAACCAGAGGAGTGTTTAACAACGCCAACAGGTGAGGAATCAAGGATACCAACTGTGTTCACGTGTCCACCTGCTCC AAGGAAGCGAAAGCCTTCTTTGCAGTGCAATTATCGTGGTGTGGTGAGAAAGTTCTTCACGCCACAGGAGTTAGAAACTG TGTTCATTCAAAGGGCTAATTGAATTGAATTGAATTGAATCACACAAGATATGGAAAAGCAGAGATTAAAGTAGCAAGTG GTGTTGTCCTCTCTAGCTAGCTTTTAGCATTTTCCTTAATTAATTGTGTACCTTAGTTTTTTTCTCTAGTTGAAGTGTTT TTTATGTTTTATCTTGAGTTACTAGACTTTCCTTCTGTAGTTCAAACTTCAAAGATTAGGACTATTTTGTACAGAGCAGG TTAAAATGAATAAAATTGCACCTTAAGC
CDS sequence (LotjaGi4g1v0157400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGCTTTCTGAAAACGTGCAAGTAGAAGGAGCCTTTGAATCAGATAACAGAAAATGGGTAATTGCTGGAATTGCTTT ACGTGCACCCTTGAAGCCAATATACACTGCACATGTGGAGAAGGAAATCAGAGAAGACTCTGAACCAGAGGAGTGTTTAA CAACGCCAACAGGTGAGGAATCAAGGATACCAACTGTGTTCACGTGTCCACCTGCTCCAAGGAAGCGAAAGCCTTCTTTG CAGTGCAATTATCGTGGTGTGGTGAGAAAGTTCTTCACGCCACAGGAGTTAGAAACTGTGTTCATTCAAAGGGCTAATTG A
Protein sequence (LotjaGi4g1v0157400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLSENVQVEGAFESDNRKWVIAGIALRAPLKPIYTAHVEKEIREDSEPEECLTTPTGEESRIPTVFTCPPAPRKRKPSL QCNYRGVVRKFFTPQELETVFIQRAN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 104 | 104 | 4.4E-42 | – | |
| PANTHER | 1 | 104 | 104 | 4.4E-42 | ||
| MobiDBLite | 45 | 70 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of DNA endoreduplication | Any process that modulates the frequency, rate or extent of DNA endoreduplication. |
Expression pattern of LotjaGi4g1v0157400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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