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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0342500 |
| Transcript ID | LotjaGi4g1v0342500.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial carrier protein-like; TAIR: AT5G48970.1 Mitochondrial substrate carrier family protein; Swiss-Prot: sp|Q29RM1|TPC_BOVIN Mitochondrial thiamine pyrophosphate carrier; TrEMBL-Plants: tr|G7JKD9|G7JKD9_MEDTR Substrate carrier family protein; Found in the gene: LotjaGi4g1v0342500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72227864..72230769) extracted from Lotus japonicus Gifu genome v1.2.
GTGTTTGTGGCAATGGAGGAGCCGAGCCAGCTGAAGCGTGCCATGATTGATTCCTCAGCTGGAGCAATTTCTGGTGGAAT ATCTCGAACTGTAACATCTCCCCTTGATGTTATTAAGATTAGATTCCAGGTTTGTTTTTTTGGAATGTTTTGTTATGCAT CATTGTATTGTTCTTTGTTGTCTTTTGGTGTTTGTTATTCACACTCACAATGACAGGTTCAACTGGAGCCAACTTCTTCA TGGGCTTTGCTAAGGAGGAATTTGGCTGCAACTGCTCCATCCAAATATACTGGCATGTTTCAAGCAAGTAAAGATATTCT AAGAGAAGAAGGTGTACAGGTACAACAATAACCCTCCTGTATGATTCTGTAGTAGGAAGTTAATCCTGGTTCTGCATTGA ATTGTGTGCCCATTGCCAATCCAAACACACTATAAGTCTATCTTGGTGCTTTTTTTGAAGTTTTCTGCCCTTTATTTCTG TCCAATTTGTTTTTTCAGGGCTTTTGGCGGGGAAATGTGCCTGCACTGCTCATGGTTATGCCATATACAGCTATACAGTT TACAGTTTTACATAAGTTGAAGACTTTTGCCTCTGGTTCTTCCAAGACAGGTATGATATTTTGTTGTTCAATGTACCAAT ATATCGGCTTCATTAGTATTGTATTGAGACTCAAATTATGTTTTGTTGCATCGTCAGCAGTTGTTGCAAGTTTTGACTTC TGTCAGTTAGGTCCATAAGATAAGCTCTTTAAATTCATTTTGATATCTTGCATAGGACTTTTTTGGAAGAGGATCCTCTC TGTAGTTATTAGGTTTATGATCTATGCATGCAATTCAAAACTTATGCCTCTGCACACTGGAATAATAATTGCATGCCTGG AAATTACCTATATCTTCTCCAATTCTAGATTTATGTGGTTCATTGGCGGCTTTTTATTTCTGCAGAGAATCACATTGGTT TGAGCCCTTATCTATCCTATGTCAGTGGGGCATTAGCTGGCTGTGCAGCTACTCTAGGTTCATATCCCTTTGATCTTCTC AGAACCATATTAGCTTCTCAGGGTGAGCCAAAGGTATTAACTATGATTTAATTTAAGACAGTTTCCAAGTTAGTATGTTA ATGTTTATTCTGAAGGCCAGTGAAGCATTTTACTTGTCTGCTTTTTATACACCATCCTCCTGTTCATAGACTTCTTCTGT GGTTTTCCTTTCCATCATGAACCTACATCTCAATCTATTGCTTGAAAGGTTTAGGTGGATAGAATTATTTTCATTCATTC TCTTCGTCTGTTTTATTTTTTGTTGTTTTTTTGGGCGGGGGATGCTTCTCTTTGATCCCTTGTGTAGAGAATTATACACT ATAGTTTGTCATATCAGATCATATCATGTAGGAGTTCTGTTAGCTTCAAAGCTATATCAAACCTGTAAAGTGCACGTTTC CCACTTTAAATGCCTAGAGTGGTGCCAATCTTTGTCCTTCTAGTTAAGATGTGCTATATGCTCCTGTTTGGCTTGTGTGA AAATGCTGATCCCTGATGTTGTTTTGGTCCTCTTGGAGCTTTTCCCCCTTTTCTAGTAACAAGGATTTTCTATATTTTCC AAACATTTAGGTGTATCCAAACATGAGGTCAGCATTTGTGGATATCATCCAGACTCGAGGATTTCAAGGCATGTATGCTG GATTATCGCCAACTCTAGTTGAAATTATACCTTATGCTGGCCTACAATTCGGCACCTATGATACATTCAAGCGTTGGGCC ATGGTAAAATCTCAGTCATTCTATTTAACATCTCAATTTTATTAGTTGACATAATTATGCCCTGCATGAATTGGGTGTTG TGCTTTGTTTGTGGTGCAACTCGAGTAAGCTGAAATTGTGTATTGTTCTAGATTCTGCATGATTGGTTTATTCTACTTGT TTTGCTTTGTATTATGCCACCATTTTAAATCTTGGTGGAAAATTATAAAGTTATTCATATCTCTTAAGTGTATAATGCCT TCTAGTATAATTTTGAGGATTGCTCTAAAAGTTTCTTATTTTAGATTCTAACATGGATTATGTTGGCTTTTCATGGTAAT CACTGCAATTGCACAAGCTATCTGGACGAACAATACATCTATACAGCAGTTTTTTTTTTTCTTTTTTTCAAAAGGAGAAT ATATATAATAATAATGAGGAAACCGACAAGATATAATTTGAGAATTAAAGCATGTTCATGCTTCGTACCTAATTGTTAGG TTTGTATTGTAGCACAGGAGTAAAGGAACCTTGAAATTTATTTCATCATCACTATAAATTTGTTTCCACATGTATGTTGT ATTGTTGTAGCATTTACATGACAGATGGGGCTGGATTACATCATACAGCGGATTAGTTTTTTGTTTCGATTTCACTTTAC AGTTCTTTGAAACTTTGTTTTTTTTTTTGAATTGTCTGTGTGAAATTGCAGGCTTGGAACCATTATAGGTATTCCAACAC CTCTGCAGAAAATAGTCCCTCCAGCTTTCAGCTTTTCCTCTGTGGGTTGGCGGCTGGAACATGTGCCAAACTTGTCTGTC ATCCACTTGATGTTGTCAAGAAAAGATTTCAGGTAAACATTTTCTGCTTATTTTTGTATTGGGACAATGGGTTTTTCTAT CTCATGACAAGGTAATTATGGATGTTCATTCTTTGTTTGCTACACAGATCGAAGGGCTTCAAAGGCATCCTAGATACGGT GCTCGAGTTGAGCGTCGGGCGTACAGTAGTATGTTCGACGCTATACAAAGGATTTTACGGTTGGAAGGTTGGGCTGGTCT GTACAAAGGGATAATCCCATCTACTGTTAAAGCTGCACCAGCCGGTGCTGTGACATTTGTTGCATATGAATTGACATCAG ATTGGCTAGAGTCCCTTGTGACCTAG
CDS sequence (LotjaGi4g1v0342500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAGCCGAGCCAGCTGAAGCGTGCCATGATTGATTCCTCAGCTGGAGCAATTTCTGGTGGAATATCTCGAACTGT AACATCTCCCCTTGATGTTATTAAGATTAGATTCCAGGTTCAACTGGAGCCAACTTCTTCATGGGCTTTGCTAAGGAGGA ATTTGGCTGCAACTGCTCCATCCAAATATACTGGCATGTTTCAAGCAAGTAAAGATATTCTAAGAGAAGAAGGTGTACAG GGCTTTTGGCGGGGAAATGTGCCTGCACTGCTCATGGTTATGCCATATACAGCTATACAGTTTACAGTTTTACATAAGTT GAAGACTTTTGCCTCTGGTTCTTCCAAGACAGAGAATCACATTGGTTTGAGCCCTTATCTATCCTATGTCAGTGGGGCAT TAGCTGGCTGTGCAGCTACTCTAGGTTCATATCCCTTTGATCTTCTCAGAACCATATTAGCTTCTCAGGGTGAGCCAAAG GTGTATCCAAACATGAGGTCAGCATTTGTGGATATCATCCAGACTCGAGGATTTCAAGGCATGTATGCTGGATTATCGCC AACTCTAGTTGAAATTATACCTTATGCTGGCCTACAATTCGGCACCTATGATACATTCAAGCGTTGGGCCATGGCTTGGA ACCATTATAGGTATTCCAACACCTCTGCAGAAAATAGTCCCTCCAGCTTTCAGCTTTTCCTCTGTGGGTTGGCGGCTGGA ACATGTGCCAAACTTGTCTGTCATCCACTTGATGTTGTCAAGAAAAGATTTCAGATCGAAGGGCTTCAAAGGCATCCTAG ATACGGTGCTCGAGTTGAGCGTCGGGCGTACAGTAGTATGTTCGACGCTATACAAAGGATTTTACGGTTGGAAGGTTGGG CTGGTCTGTACAAAGGGATAATCCCATCTACTGTTAAAGCTGCACCAGCCGGTGCTGTGACATTTGTTGCATATGAATTG ACATCAGATTGGCTAGAGTCCCTTGTGACCTAG
Protein sequence (LotjaGi4g1v0342500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEPSQLKRAMIDSSAGAISGGISRTVTSPLDVIKIRFQVQLEPTSSWALLRRNLAATAPSKYTGMFQASKDILREEGVQ GFWRGNVPALLMVMPYTAIQFTVLHKLKTFASGSSKTENHIGLSPYLSYVSGALAGCAATLGSYPFDLLRTILASQGEPK VYPNMRSAFVDIIQTRGFQGMYAGLSPTLVEIIPYAGLQFGTYDTFKRWAMAWNHYRYSNTSAENSPSSFQLFLCGLAAG TCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVERRAYSSMFDAIQRILRLEGWAGLYKGIIPSTVKAAPAGAVTFVAYEL TSDWLESLVT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 327 | 327 | 7.6E-204 | – | |
| PANTHER | 1 | 327 | 327 | 7.6E-204 | – | |
| Gene3D | 5 | 327 | 323 | 2.5E-86 | ||
| ProSiteProfiles | 8 | 110 | 103 | 27.855 | ||
| SUPERFAMILY | 9 | 319 | 311 | 1.44E-79 | ||
| PRINTS | 13 | 26 | 14 | 9.9E-22 | ||
| Pfam | 14 | 111 | 98 | 8.5E-21 | ||
| PRINTS | 26 | 40 | 15 | 9.9E-22 | ||
| PRINTS | 85 | 105 | 21 | 9.9E-22 | ||
| ProSiteProfiles | 123 | 209 | 87 | 22.492 | ||
| Pfam | 125 | 210 | 86 | 5.0E-20 | ||
| PRINTS | 138 | 156 | 19 | 9.9E-22 | ||
| PRINTS | 182 | 200 | 19 | 9.9E-22 | ||
| ProSiteProfiles | 227 | 324 | 98 | 24.208 | ||
| Pfam | 228 | 325 | 98 | 3.2E-22 | ||
| PRINTS | 236 | 258 | 23 | 9.9E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP transmembrane transporter activity | Enables the transfer of ATP, adenosine triphosphate, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0342500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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