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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0342800 |
| Transcript ID | LotjaGi4g1v0342800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G10400.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9SV82|FBD40_ARATH FBD-associated F-box protein At4g10400; TrEMBL-Plants: tr|I3S3Z9|I3S3Z9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0342800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72256834..72259248) extracted from Lotus japonicus Gifu genome v1.2.
GTTAACAACTATCTAAAGCCTTTAAGAAAAAGACAAGTATCTATAGAACCCTTAGATCCGCAAGTACACACTACAAAGGA GGGTTTGGATTCCAGCTAGAAAACCCAGCATCGAAGCAGTGAAAACGGTACTGACAAATCTCTTCCTTCTTCAGATTTAC AATTTCACAAATCTAGTTGACACTGTGATTTTCAAACTCATGATTTTAATTTGTTATTTCATTTGGGGAATGAGTAATGA CCCTTGAATGTTGTGGTCTGTGTCTCAGTGATTTTACATTTTTAATTTGTTTTTTTTTTTCGTTCCACTGCATATTTGAA CTTGTGGCTGTGAGATTTAGTAATTTGATGAATTTTAAGTACAAGATTGTTATGAGCTGTCAGCTGAGTATGAATGGAAG CATAAACCTTAGAAGTTGGAGGAACTTGGGAACATGCTGCTGAGTGCTGACTGGTCTTGATGCCATGGAAAGCTTCTAGG GTCAGTGGTAGATTTGTGTTCTGTGTGTTTGATATCAATGGCGGTCGACAGGATTAGCATGTTGCCAGATGAAGTACTTT ATCACATTCTCTCTTTTCTCCCAACTCAAATGGCTGCAAAAACAAGTATTCTTTCGAAGAGGTGGAAGCCACTATGGCTC TTAGTTCCTACTCTCTTCTGCGACGACCGAAGCTACCTCCGAAACTACAAACCCTATCATTACTTCACAAAGTTTATATA TGCAACCATTCTCGCTAGAGATGTGCCCATTACAACATTTCGTCTGCAATGTGAGGCTTCCAATACCGACTTTTCTGTTT CCGATCTCCAGATTTGGGTCAATGCTGCAATACAACGTGGACTTGAGAACCTCTACATCCGGCTGCCGCATAATGAAAAT CAATTGAGCTGGAATTCCTGCATTTTGGGCTGCAAAACTCTGGTTGTTCTCAAGTTGGCGGGGTTAGACCTGGATGTAAT TTCTTTTGCTCACCTTCCTTCACTCAAAACTCTGCATTTGTTTGATGTTACCTTTCTAGAACCCCTGTATCTTGTGTCTT TTGCTGACCTTCCTTCACTCAAAACTCTGGATTTGAGAGATGTTGACTTTCCAGAACCGCAGTGTCTTGTGGATCTTCTT GCTGGATGTCCAAATCTTGAGTATATGCGTCTGAGGGATATATTCTATGATGATGTTGACGCTATAGTTCATTATAAGAA CTTCAAAAGCTTATCTAAGTTGGTCAGAGCAGATATACATTCCGTTCTTTTTGATATTTTTGTTGAATCTCCTAAATTTG ACAAGGTTTGTATAAATGTTAAAAAGTGTGTTTAATTCGTTTGGTTTTGAAAAATGTCACTAATGTTTGTTAGTACTCTT TTTAACTCTTGCAGTACCTGGATGACATTCTACTTTTTCCCAATTTAACTCATGTGGAGCTTATGTTCGGACTTTGGATG AGCTGGGATTTTGTACTTGCAATGCTCAAGCACAGCCCTATGCTTCAATATGTTGTCCTTAGTATGCAGATACAAAATGG ATTTTATCAATATCCGGTTTGGATTTCCCCCTGTTTTGCTCCTGAATGTCTTTCTTCACAGCTTAGGAAATGTTCCATTA TAAATTATGCAGGCAGGGAAAGTGAGCTGCATTTTGCAAAATATATTATGCAGAATTCAAAAGTTTTACGGACAATGACA GTATGCACTCTGCGTTACTCAGAATTAAAGGTCGAAGACAAGCTTGAACTACTGAAAGAGTTGTCCTTATGCCCAAGGAG TTCTTCAATATGTGAACTTTCATTTACATGAAAATGAATGACAGGCTCTAGTTAGTAGCTGCCAATTGTGTTTAGATGAT TGCTTTGGTACTTAGTTTATCTACTACGTCCTATAGTAAAATTACTAGTGTTTTGAAGGACATGGAACTTGTCTCTTGTT CAATGAAAGTCGTTAAATGTCATTTTTTCAAGTAAGTGAAGATTTGTATTTTTAATTAAATGACTAGCTCCTTTGAAGTT TTATATCTTTTGTGGACATTTTTTTGGAGTTTAGTTACACCTATACCCATCTTGTGGTTATTGGTCTGCTGAATATTGAT ATGCTGTGGAGTTTTTATTATTTGTATATACCAAGCATGCACATATCTAGAATTGAACATTATGTGGGGTTCTGCCCATA CCTACCCTTCTCCCCTCCAATGTTGTCCAAAATTATTATTTAGCTCACCATTTTTTTCAGCAATCATGCATTCATGTGGT TCTGGGGTGCTAGGTGATGATCGACTTCCTGATAGAAAGGTTCATTAACCATCTAGAAGGGCGTGATTACGTGGGGTTCT GTTGTTGGTTTGCAGTTCGAGTCTTTCTATGAATAGGTTCTGGCATTTGGATAGGTGTCTCTTAAGTTCTTATTTTATTA TTGTTTTTTCTTAAC
CDS sequence (LotjaGi4g1v0342800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCGGACTTTGGATGAGCTGGGATTTTGTACTTGCAATGCTCAAGCACAGCCCTATGCTTCAATATGTTGTCCTTAG TATGCAGATACAAAATGGATTTTATCAATATCCGGTTTGGATTTCCCCCTGTTTTGCTCCTGAATGTCTTTCTTCACAGC TTAGGAAATGTTCCATTATAAATTATGCAGGCAGGGAAAGTGAGCTGCATTTTGCAAAATATATTATGCAGAATTCAAAA GTTTTACGGACAATGACAGTATGCACTCTGCGTTACTCAGAATTAAAGGTCGAAGACAAGCTTGAACTACTGAAAGAGTT GTCCTTATGCCCAAGGAGTTCTTCAATATGTGAACTTTCATTTACATGA
Protein sequence (LotjaGi4g1v0342800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFGLWMSWDFVLAMLKHSPMLQYVVLSMQIQNGFYQYPVWISPCFAPECLSSQLRKCSIINYAGRESELHFAKYIMQNSK VLRTMTVCTLRYSELKVEDKLELLKELSLCPRSSSICELSFT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 13 | 13 | - | – | |
| PANTHER | 4 | 119 | 116 | 2.6E-23 | – | |
| PANTHER | 4 | 119 | 116 | 2.6E-23 | – | |
| Pfam | 45 | 87 | 43 | 6.8E-15 | ||
| SMART | 48 | 122 | 75 | 1.0E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0342800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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