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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0372400 |
Transcript ID | LotjaGi4g1v0372400.2 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Reticulocyte-binding protein 2 isogeny a; TAIR: AT3G50370.2 hypothetical protein; Swiss-Prot: sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a; TrEMBL-Plants: tr|V7C5Z7|V7C5Z7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0372400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75218900..75220243) extracted from Lotus japonicus Gifu genome v1.2.
ATGATTCCTCCGAGAAGGAAGAAATGGACGGAGGCGGAGGAGAAAACCCTAATCGACAAGTACGGCGAGATGGTCGCCGA TGGTTCTCTTGCGAAGATGAGAACTCGAGAGAAGAAGTTCAAACCAATTGCTTGTCATGTGAATTCGTTGCATCACCTTC GCGATCCCATGGCGTATCCATGGCAGTGGAGTTGGAAGGATGTTTCCACCAAGGTGCAGAACATGAGGCATCAGTATCTG CTGGTTAAGCAGAAGATTAAGAAACCTGAGTTTTCGGGGATGGAGAGTAGTAATGGTGGGGATTGTGATGGGGGTGAGTT TGATTGGGTTGAGGGTCTTACTCATTGGTCTAATTTTCTTAGGTATAAGGAAGTGTTTGGTGATGTTGCTCTTGTTGTTG GGAGTTATGCGAATGGTGGTGGTAATGAGTTGATGGTGATTGGTGATGGTGATGGGGATCATGGAGATGGGTTTCTTGCT GATGGTGGTGGTGGTGGTGGTGGAGGGATAGATATGGTTGAGTTTGGTCAGATGGGTCATTCTGGGAATGGCGATGCTGA TGGTGATTTTGCGGCTGCTATTGATGGGGTTGATAATGAGGTGATGGGTTTGGGGTTTGAGTATGATGCTGAAGAAGGGG AGGTGAATTATAATGAGAATGGCCGGACTAGGGAAGATGCAGAGAACGGTTATGAGGAAGGGGAAGTGACGGGGTTGAAC TCGAAGAAGAAGAGGAAGGCGGCGAAGGGGATGGAAAAGAAAGTGTGGAGGATTCTTTCTAACCAGATGGGACAGTTGAG GGAAATGGAGGCTCGGTTCGAGCAGCGAGAGATGGATAGAGAGCGGGAGAGACAGCGGAGGGAGAATTTGCAAGCGGAGC TTGATAGGCAATGGGAAAAGAAGCTGGAGGAGAGGGAGAAAGATAGGGACAAGCAGAGGAAGCAGAGAATGGCTGAGTGG GAAGCTATAGAGAAGGAAAATGAAGAGATGGAAAGGAAAAGAAGAGAGGAAGATTTAATTCATGAGAGGGAACGAGAGGA GAGGATGAACTGCAGGAGGCTAGAATGGAAGAAGAGGATCGATGAGATGCTAAATCAGCACCGAGCAGAAATGGGGCAGA TTCAGACTCGCATTCTTCACGAGCAACAAAATCTTACTAGTCAATTGCTTGGTATATTCTCACAGTGGACTGCCCAACCT GCTGGCATTTCTGATCATACTAGTGCTAGCAACCATTATCTTTCACAAATGATGCAAAATCTGCATCATGTGAACGGCAT TGTCCACGGCGACACCAGGGTTGAGGGGGATAATCAAGAAGATCAATTCATTGTTGATGGATGA
CDS sequence (LotjaGi4g1v0372400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCCTCCGAGAAGGAAGAAATGGACGGAGGCGGAGGAGAAAACCCTAATCGACAAGTACGGCGAGATGGTCGCCGA TGGTTCTCTTGCGAAGATGAGAACTCGAGAGAAGAAGTTCAAACCAATTGCTTGTCATGTGAATTCGTTGCATCACCTTC GCGATCCCATGGCGTATCCATGGCAGTGGAGTTGGAAGGATGTTTCCACCAAGGTGCAGAACATGAGGCATCAGTATCTG CTGGTTAAGCAGAAGATTAAGAAACCTGAGTTTTCGGGGATGGAGAGTAGTAATGGTGGGGATTGTGATGGGGGTGAGTT TGATTGGGTTGAGGGTCTTACTCATTGGTCTAATTTTCTTAGGTATAAGGAAGTGTTTGGTGATGTTGCTCTTGTTGTTG GGAGTTATGCGAATGGTGGTGGTAATGAGTTGATGGTGATTGGTGATGGTGATGGGGATCATGGAGATGGGTTTCTTGCT GATGGTGGTGGTGGTGGTGGTGGAGGGATAGATATGGTTGAGTTTGGTCAGATGGGTCATTCTGGGAATGGCGATGCTGA TGGTGATTTTGCGGCTGCTATTGATGGGGTTGATAATGAGGTGATGGGTTTGGGGTTTGAGTATGATGCTGAAGAAGGGG AGGTGAATTATAATGAGAATGGCCGGACTAGGGAAGATGCAGAGAACGGTTATGAGGAAGGGGAAGTGACGGGGTTGAAC TCGAAGAAGAAGAGGAAGGCGGCGAAGGGGATGGAAAAGAAAGTGTGGAGGATTCTTTCTAACCAGATGGGACAGTTGAG GGAAATGGAGGCTCGGTTCGAGCAGCGAGAGATGGATAGAGAGCGGGAGAGACAGCGGAGGGAGAATTTGCAAGCGGAGC TTGATAGGCAATGGGAAAAGAAGCTGGAGGAGAGGGAGAAAGATAGGGACAAGCAGAGGAAGCAGAGAATGGCTGAGTGG GAAGCTATAGAGAAGGAAAATGAAGAGATGGAAAGGAAAAGAAGAGAGGAAGATTTAATTCATGAGAGGGAACGAGAGGA GAGGATGAACTGCAGGAGGCTAGAATGGAAGAAGAGGATCGATGAGATGCTAAATCAGCACCGAGCAGAAATGGGGCAGA TTCAGACTCGCATTCTTCACGAGCAACAAAATCTTACTAGTCAATTGCTTGGTATATTCTCACAGTGGACTGCCCAACCT GCTGGCATTTCTGATCATACTAGTGCTAGCAACCATTATCTTTCACAAATGATGCAAAATCTGCATCATGTGAACGGCAT TGTCCACGGCGACACCAGGGTTGAGGGGGATAATCAAGAAGATCAATTCATTGTTGATGGATGA
Protein sequence (LotjaGi4g1v0372400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIPPRRKKWTEAEEKTLIDKYGEMVADGSLAKMRTREKKFKPIACHVNSLHHLRDPMAYPWQWSWKDVSTKVQNMRHQYL LVKQKIKKPEFSGMESSNGGDCDGGEFDWVEGLTHWSNFLRYKEVFGDVALVVGSYANGGGNELMVIGDGDGDHGDGFLA DGGGGGGGGIDMVEFGQMGHSGNGDADGDFAAAIDGVDNEVMGLGFEYDAEEGEVNYNENGRTREDAENGYEEGEVTGLN SKKKRKAAKGMEKKVWRILSNQMGQLREMEARFEQREMDRERERQRRENLQAELDRQWEKKLEEREKDRDKQRKQRMAEW EAIEKENEEMERKRREEDLIHEREREERMNCRRLEWKKRIDEMLNQHRAEMGQIQTRILHEQQNLTSQLLGIFSQWTAQP AGISDHTSASNHYLSQMMQNLHHVNGIVHGDTRVEGDNQEDQFIVDG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 447 | 447 | 1.9E-221 | – | |
PANTHER | 1 | 447 | 447 | 1.9E-221 | – | |
MobiDBLite | 221 | 242 | 22 | - | – | |
MobiDBLite | 221 | 245 | 25 | - | – | |
Coils | 266 | 300 | 35 | - | – | |
Coils | 313 | 347 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0372400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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