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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0385500 |
| Transcript ID | LotjaGi4g1v0385500.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium-dependent lipid-binding (CaLB domain) family protein; TAIR: AT4G21160.1 Calcium-dependent ARF-type GTPase activating protein family; Swiss-Prot: sp|Q9FVJ3|AGD12_ARATH ADP-ribosylation factor GTPase-activating protein AGD12; TrEMBL-Plants: tr|A0A1J7GJ85|A0A1J7GJ85_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0385500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76383698..76387698) extracted from Lotus japonicus Gifu genome v1.2.
TGTGGTTTCAATACTTTTGAATTTCTATGAACATTTCGGGATTTCGATCAAATGGAAAATGAAAATGCCCTGCCTATGAT TTATTGATTGATTGCTTATGAATGAATAATGTTGGTAAATGCATGTCTATGGAAAATCTTAATGTGTTATTGGATTTCAT TGGTTTTTGGTTTCATTAGTCTTTAACCAGATATTTCTTTCTTCTTTAGGTAGTTTAGCTTGTCTTCCATTGTTGGAGTT GCACCTTGGATGATTGTGGGCATCAAAGATGGCAATGAGCAATAAACGGTTGGAATTTGGGAGGCCTGTCTCAAGTATGC CATGATCCTTTGATACTTAACGCGATACTCTCTTTGCATTTACCTGATATACCTTCATCTGCAGTTTAATTAACTCTCCA CTAGCACACAATCATCACAACTCGCCTCATATAAGTGCTTATTCATAAGCTTCTTTGAAAAACTTATTGAAAAAAACTGA AAAGAGCTTATAGCTACCTGGAAGCCTTTATTCCTAAGCTTATCTGAGAAGCATATCAAAACAATCTAAAAAAAGGCTTA TAGGTAGATAATCTATTTGCATAAGTCTAACCAAACACATACTTACGTGTTATGCTATAAGATAAGTTCAAATAAGCTCT TACAAACACACCCGGAGTTTTGGCTTTATGTTCGCAAAAACAGGACTGGCTTAAGGCAAAGCTTGTCTTGCTTATTTTCA TGTACAATTGTGAAATGCAAAGCTATTTTTACTTATTTTTCTTTGAGAGGTTGAATGATTGGCAGGTCTCTTACAGGTAA AAGAAGATTGAAGGATTTATTGGTCCAAAAAGATAATCGCTTTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCGT AAGCGTATTCATCTTTATACATGGCTTCTTCTTTTTTCTGGTTTATGGTCATGGTCAATGATTAGATTACTCAAAACCAA GGTTTGAGTGTTGAGTGTAGGAAATCAGCCACATGACATTTAATATGATGAAAAATTTGGAATGCATATTACCTTAACTG AAAATTCATTTTTTGAAATTCTTCTTCAGGTCAGCCAATATTGGAGTGTTTGTATGCTTAAAATGTTGCGGTGTGCACAG AAGTCTTGGTACTCATATTTCAAGGGTAACAATTCCAGATCCCTTACTTATGAAATATTTTCTTTCTGCTAATGTGGAAT ATTTAAACCGAGTTCCTTCTCCATTTGTCCTGAACAAATTTAATTTCTAATAACCTATATATGTGGCTAGTTATTTTCTA TAACTTGTATTTGAACTAGGCTCAACTTGATTTGGTAAGAAGATCATCGATCACTATTATGTGGCTATACTCATGAAACA GCCTGGCCAACTTTGTATTATGTTTGGTTGAATTATTTCCAACTTTACTACCTTATGCTTGTGAGGCATCCTCATTGTTA CATTCCAAATAAGCATGCTCTGACATCTTCTGTAACTCAAATGAAAGATAAGCTAAAATTAGTGACCTATGAGATCAAAA GTAATTTTTTTGCAAATAAAGGTTTCTATTCAGCATAACACTAGTCATTCTGCTGTAGCTTTTGTCGTCAAATCACTACA CAACTGCTAGACACAAGTTTTAGATGTAATAAGTGAACTGTGAAAGGAACCTCCAAAATTCCTAGTTAAGAAGCAAACTC AGTAATAATGCATAAAGCCATTGAATTGGCATTCTGTGAAATGTACAACTAACATTTTAAGAAAGTTAGTCATGTCAATT ACAATTCAGCTTCAGTTTATGTGGCATGAAATTAAGCCAAATCAACCTTCACTCGGGAGAGTTACAAGAAGCATCTTTTT GGGATCATGTTCTGTCATGTTCTTTGTTTTCAATAAGTTGTGCCTAAAAAGTTAATAGGGCATAGATGCTGAACTTCTTT TTTATGTTTGTCTTATCATGCATTAAGCCTTGAGACATTTTTAATTACTTTCAGATTTTGTCTGTGACACTGGATGAATG GTCAAGTGATGAAATAGATGGAATGATGGAAGTAGGAGGAAATGCTTCTGCTAATTCAATTTATGAGGCTTATTTTCCAG AAGGATATACAAAACCTGGACCAGATGCCAGTCATGAGGAGCGCGCAAAATTCATCCGGTTAGACACATTTTCATATGAT CATCTGACTTGTTATGAATTTCTGTCCTCTCACCCCAATTTTCTTTCTTCTTCTCATGTTTTTTTTTTTTATAATTTATT AGTCATTTATTTTCTTGATTTTGTTTGTACTCCTCTTCTGTTACACTTTTTAATCACAGTTCATTATCCTTGGTTGAGCA CTGACTAATCAGCATGACAGTGCGATATTGTTCATTGTAGCACCATCAATGGTACCAACCTGGTCAATACTCAAGTTAGG AGTGACATTTTAATGATCATAAATTTGACTATTAAAATTCTTTAGACTAATCAGCCAATAAATCATCATAAATTCTTTAA TTTAAAGAGTAAATTTTTTATTTAGATTAATCCTAACCAGTGACAACTTTGACTGCAGGTCAAAGTACGAGCATCAAGAA TTTTTGAAGCCTAGTTTGCGCATTGTGTCAGGAAAAGGGTCAACACAAAGCAATCGGCAATCAAGTTTCTCCAAAAGGAT TATAGATAGTTTTCGAATTACCAAGAGCTCACCGAACATGGTGATTATATTTTAGTTCCTTAGATTCTAAATGTTATTGT TTGTTGACCATAAGTTGATTTGGCATATGAATGTGAACCAGATGAAATTCTTTTAATCAAAGACAATTTCATAAACGTAT GGATGCTGACCAAAAAGCACTTAGTGTTGTTTTAGTAGATAAGCTGCAATAAATGTTCTTTAGTCTGTTCCAAACGGGCT TACAGGCGTGTTTGCTTCGTGCATCCAACTTTACTACTCCGGTAGTAAAAGAAATGAAAATATTTTTTGCGAGTGGTTTT CTTGAATGTTTGACTGATATTGGAGGTGAAAACAGGAAGGAATGGTAGAATTTATTGGAATGTTGAAGGTGAAAGTGATT AAAGGCACAAATTTAGCAATCAGAGATATGATGACAAGCGATCCATATGTTGTCTTGAAACTTGGCCAGCAGGTTGGTTT TTCAAATTAGCATTCTTGGGAAACTATTGCTCTTTATTTTTTATTTTCAGCTGAAGAATATTGGATGCTGATAACTTTGT TTCTGAATTGACAATGGTGCTTTTGCTTTCAGACTGTTCAGACAACTGTAGTAAAGAGTAATTTGAATCCTGTCTGGAAT GAGGAACTTATGCTATCTGTTCCTCAGCAATTTGGACCAATTGATTTGGTAAGGTTGAATTTTATCTCAAGTATTGAATG AAAATCTTACCCTTATGGACTTAATTGCACTTTTAGTCCCTTCATTGTAACTGATGTGTGATATTGGTCCCTATAATTCT TTTAGCAAATTTAATCACTCCATTTTAAAAACTGTTACAATCACTTCTATTCTATTATAAACTCTTACATTCCAACTTTT TAAGTGAAATCCTAACAAATGACACACAATTTTGATGCTTTGCATTGCAGAAGGTGTTTGATCATGACTATTTTTCAGCT GATGACATAATGGGAGAAGCAGAGATTGATCTTCAACCCCTGATAACATCTGCAATGGCATTCGGAGATGCCGGAATGTT CGACGATATGCAGATAGGAAAATGGCTGAAATCCAATGACAATGCACTTGTAGGAGATAGCACTGTCAACATTCTTGATG GTAAGGTTAAACAAGAGATGACACTGAAGCTTCAGAACGTTGAATCTGGAGAATTAGACTTAGAACTCGAGTGGATACCC CTTGATCATTAACGAGTACATTACTGCTATTAACTTATCAATTGCTTTCTGTTGAATAAATATATTTTATTTTTCTCCTA CTTTTCTAAACTTTCTGTTTCCATTTCTTTATTCAATTAAACTATCTACTAAATTTGGTGAATTACTCGGGTTGGTTTAG G
CDS sequence (LotjaGi4g1v0385500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAGAATTTATTGGAATGTTGAAGGTGAAAGTGATTAAAGGCACAAATTTAGCAATCAGAGATATGATGACAAGCGA TCCATATGTTGTCTTGAAACTTGGCCAGCAGACTGTTCAGACAACTGTAGTAAAGAGTAATTTGAATCCTGTCTGGAATG AGGAACTTATGCTATCTGTTCCTCAGCAATTTGGACCAATTGATTTGAAGGTGTTTGATCATGACTATTTTTCAGCTGAT GACATAATGGGAGAAGCAGAGATTGATCTTCAACCCCTGATAACATCTGCAATGGCATTCGGAGATGCCGGAATGTTCGA CGATATGCAGATAGGAAAATGGCTGAAATCCAATGACAATGCACTTGTAGGAGATAGCACTGTCAACATTCTTGATGGTA AGGTTAAACAAGAGATGACACTGAAGCTTCAGAACGTTGAATCTGGAGAATTAGACTTAGAACTCGAGTGGATACCCCTT GATCATTAA
Protein sequence (LotjaGi4g1v0385500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVEFIGMLKVKVIKGTNLAIRDMMTSDPYVVLKLGQQTVQTTVVKSNLNPVWNEELMLSVPQQFGPIDLKVFDHDYFSAD DIMGEAEIDLQPLITSAMAFGDAGMFDDMQIGKWLKSNDNALVGDSTVNILDGKVKQEMTLKLQNVESGELDLELEWIPL DH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 162 | 162 | 6.3E-93 | – | |
| PANTHER | 1 | 162 | 162 | 6.3E-93 | – | |
| SUPERFAMILY | 2 | 91 | 90 | 3.56E-29 | – | |
| Gene3D | 3 | 162 | 160 | 1.4E-30 | ||
| CDD | 5 | 149 | 145 | 5.1068E-77 | – | |
| Pfam | 7 | 96 | 90 | 5.1E-25 | ||
| SMART | 7 | 102 | 96 | 2.1E-19 | ||
| ProSiteProfiles | 8 | 87 | 80 | 15.992 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0385500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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