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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0391400 |
| Transcript ID | LotjaGi4g1v0391400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Actin-related family protein; TAIR: AT1G13180.1 Actin-like ATPase superfamily protein; Swiss-Prot: sp|Q9SAF1|ARP3_ARATH Actin-related protein 3; TrEMBL-Plants: tr|A0A072TU70|A0A072TU70_MEDTR Actin-related protein ARP4; Found in the gene: LotjaGi4g1v0391400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77005638..77012700) extracted from Lotus japonicus Gifu genome v1.2.
GAAGAGAGAAAAGGACCATTTCCATAGTTTGATTGTGGAAAAGGAAAGCATATCAGGAAAACAAACAGAGTTAATGGAAC CTTCATTTGTTACGAGTTTATAGTTGAAAATGGCAAGAAGAACAACAACAAGAGTAACAATCACCAACCACCACCACTTC CAACATCTTCCTAATTCTACGTTGTTCACTCGCTCTTTTCACTTCATATCAAAGCCTGCGTCACCATCATCCTCATCACC TACACCACCATGATCCCTTGCTTCACCCTCACTTCCGGATCTCACCTTCACATACACCTTCAAACTTCACTGCCTTCTCG CTCTTCCTCATGGACCCCGCTACTTCTCGTCCAGCTGTAGTCATCGATAATGGCTCCGGGTACCCTTTTCTCCATCTGGG TGTTTTTTTTGCTCTGTTTCAATATTGCCCACCACGTGTTTGTTAAAATTACCCTGTTGGATTTTTTTGATTTTTCGAAG TTCTGTGATTAGAATTGTGTGAATTCCTGATTGACATGAATTGGGTTATGTTTTTTGTTGCAGGTATACGAAGATGGGGT TTGCTGGTAATGTTGAGCCATGTTTTATTGTTCCGACAGTGGTTGCGGTTAACGAGTCCTTTCTGAATCAATCGAGGAGC ACTTCTAAAGGCAATTGGGTTGCCCAGCACAACGCTGGGGTTATGGCGGATCTTGATTTCTTTATTGGGGATGATGCGCT TTCTAAGTCGCGATCCAGCAGCACTTACAATCTCACTTACCCGATTCGGCATGGCCAGGTTGATAACTGGGACGCCATGG AGCGCTACTGGCAGCAGTGCATATTCAACTATTTGAGGTGTGATCCTGAGGATCACTATTTTCTCTTGACGGAGAGTCCG TTGACAGCTCCTGAGAGTCGCGAGTATACTGGGGAAATCATGTTTGAGACTTTTAATGTACCTGGACTTTACATTGCTGT GAATTCTGTGCTTGCTCTTGCAGCTGGCTACACAACATCTAAGGTTGGTAATTGGTACTCTGTGAAAAATATTGTGTAGT ATGTAGATAGAGTTGGAATTGTGGAGTTGGATGATTAATCTTTAATGTTTTGTTCATTTAAGCTTCTGCAAAATCTCCTC TACAACTTTTCTAGCTAGCTATCGATGCGCAATATGCATAGGATGTTTTATCAACCCCTGCAATTTGACTCTCTTGATAT TTTCGCCTGAAAGTGTGATGTGTTGAATATGAACTTTGTGGTAGTTTTGCAATATTACAAGCTCATAGGATAATTTATCA GCTCTCCTTATAGTGTTGGATGTAAAATGTTAAGTTGGTTATTCGCAATTACTTGCAAACTTGATGACATAGCCCCAGGA GCTATCAAGAAATTCTGTTTCTTGATTTTTATTATTATACCTATATCCTATTTTCAGAATGTTTTCCTTTTAGGCTGATT TGGAATTCTTCTCAGTGTGAGATGACAGGAGTCGTAGTGGATGTTGGAGATGGGTCTACTCATGTTGTGCCTGTCGCAGA TGGCTATGTTATTGGGAGTAGTATCAAATCGATTCCTCTTGCTGGAAAGGATGTTACTCTTTTTGTTCAGCAGCTTATGC GGGTAGGCAATCCTTGTGGTAAAAAGTAGAACTTTATTCTGCTGGTATCTGTTCCTAAATTTTAATATCTGGGAATTGCT TTGAACCACTTTTTGTTAATATTGAGGGTTCTCACAAATTTCCATTTAGACTAGCTACTGAAACCAGTCATGTCTCATGT GTAAACACTAAAAAATGGAAGAACATTATGTGATGTATTTATGCTAATAGAATTGTTTTTACATGTTTAATAGTTAATAA GTGGAAGTGTAGGTCACTAATTCATGATTGAGTAAAAAATTATTCATGTATTTTGCTTTTCTTTTTTTGCACTTAATGCG ATTGTAATAATCCATATCCAATTGTCAATTTTCAATATTCAGATTCATGAACTGTCTCATGTTGACATTGTTTCATTCAG GAAAGAGGAGAGAATGTACCACCTGAAGATTCTTTTGAAGTGGCTCGTAAAGTAAAGGAAATGTATTGCTACACATGCTC TGACATTGTGAAGGTTGTCTCCATTTTCACCTTTAATGCTTTGGACATAATCATCTGAGGAGTTTGTGATGTGCTGTGCC CTTTGTTTCTTTTAATTTTGTTGAGCCCAGCATTAGGGTGTTTATGAACTTCCTTAATACTTTTAATTGCTTCCCTTTTG TGAAATAAGGGATATCAAGTTGCTTTCTGGACTTATAAATTCTCCTTAATAACAATAGCTCAATTTCTCAGGAATTTAAT AAACATGACAAAGAACCAGCCAAATATATCAAGCAATGGAGAGGCATCAAACCAAAGACAGGGGCTCCATATTCCTGTGA TATTGGCTATGAACGATTTCTTGGCCCTGAGGTTTGTTTGGTGGCTCTACTTTTCTCTATTATGCATACCTAAATTTGTC TTAGAGGGTTCTGGATTGTACATATTTGTATCTACTTGTTTTTTTTTTCTTACCTTTTTTAGCTTTGTGAATACCTGAAC CCATATCCTTAATACTGAATTAATTTTGAACTTGATTAGTTCCTACTTCCTACCATCAATACCAACCTGAATTATAGGGG ATTTTATGGGAAAATGATAAAAAAAAATTGAAGTGATATTTTTTCATTTTGCCTTGCCCTACCTTTGCCGTGATAAGGTC AAAGTTTGTTCCTTTTCCCTTTTGGTTTATAAAAGAGATCTAATACCTAGTGTGGGGGAGGGGAAGGGAGGCTTTAAAAT GTTGGCAATGTAGCCTGGCTGGGATTTCAACCAGGGATCAACTGATCAAGTTGTCACCTGATCAGCTATAGCTCATGGTG CTCCTTGGGTTTGTTCCTTTAACCTTAACTTTTGAAGAATTCATGAAAATGTAGCTGTAGTAGTGCCTTGTTTTAAGTGT TGAACTTCTCTATGGGTTTGGGACTTAGGTCATTATGTCAACAAGATTGGTGAATTAAGATATCTGTTTGTTTTTTCTAT GATTTCTGCAGGTTTTCTTTAATCCTGAGATATATAGCAGTGACTTTAGCACTCCTTTGCCAGTTGTAATAGACAAGTGC ATTCAGTCTGCTCCAATTGACACGAGAAGATCATTGTACAAGGTTAGTACCGTAGTACCTTATCTCATTTTACTGGCTGA CATTCACATCAAGTAAACCCTGTGAGAGTGCCTACTTCAGGGGCCTAAATTTTATGATGTGCGGTTTTAACATGATATAT GTAAGAGAGAAATGCTAGCAACATACTCTTTTGAATACACTCTTCAACACACTCCCCAGGTTTGATCTATTTTCGGAAAG TCAATGCATTTGCCTTGTAAATTTATAATTTTCCTAAACTGACCTTTTTAAAAAATAGACAATTATAAGAAGTGTTTGAA GAGTGTGTTGCTAGCATTCCTCTATTTAAAATACTAAATTTTACTGAGCATTGAGTAGTCAGCTTTTACCCTAATATCAT GGAACTTCTAAGGCTCATGATTAGCAGAGGGCATTTTCAGTTGTTGTTGGCCCAGATGCAGTAAATTAGTGTTACGTGTT ATATGAGTCTACAGTATTTAATATCTGATTTTATGAAGCCTTCTAGTTTACATATTCTTAGCAATTGGTTGAACTCTTTA CATCTTGCATTGTCTTCAATTCAGAATATAGTGTTGTCTGGAGGATCAACCATGTTCAAGGATTTTCACAGGAGGTTGCA ACGTGATCTAAAGAAAATTGTTGATGCTCGTGCCCTTTCAGCTGAAACACGTCTAAATGGGGAGATAAAAGTGAGTTAAT ACATACTTCTTATTTTATCGATGGTGCTCTTTTTCTCTGTCTATATTAACCTTGTTTACACAATTTGTACGACCAAAACA GTCAACCATGGACACATCATTATTTTTTGTTAAATAATTACGCAAATCTTCGTGCCGCTCAATTTAAAATAATGATGTGT CTGTTTTTGGTTGGTTTGGTTGGCATAAATTGTGCAGACAAGGTCTACACAAGCTTCTCCACATGCTTGGAAGTTGTGAC ATTGGCATATTTATGAAAAGCTTGAGTAATTTACTGCTTTGGTCCGGCATTCACCTTTTTTCTTTATTTCCTTTATTTGG AGCCCACAGTCACATCCAGTGGAGGTCAATGTACTCAGCCATCCAATCCAGAGATTTGCAGTTTGGTTTGGGGGTTCTGT GCTTGCATCAACGCCTGAGTTTTTTACGGTATGCATTTTGTTCATTTTATGGGTCAGGAAGGTCAATCCTTGTACCATAA TTTCTACTTCTCTATAATGATAATCAGTGTTTCCATTTAGTATGGGATACTTGTTCAGTGACTCACTTTTTTCTCTGACA TAATCACATAAATACTTGGTCCAAAATCTTAATGTGTTCTTTTGACATTTACACATTTGGTCTTAAATTGTTGGTGTTGG ATAGTGTGAGTTTGTAGGTTTAGGTTATTCCTTTATTTGTTGGCAGTACATCTTAGATTTGTCCTTGAGAAAGTTCACCT ATGTAGTTGTTAATGCCTCTTTGTCTGGCATTGGTAACCTGAGTTGATTTTTCATGTTTTACCACATTGCTCAACAATTC TATGATTGCATCCAAGTACATAACAAATTATATGGTATTAGTTGCTATTGGGAATATTAAACTGCACCAGTGTAAAAATA AAACAGCATTTTTTTGCCATCTAGACTATGATGTCTTCTTTTCTTGTGATAATGTCCTTGTTCCAGTCAGACAAGTCCAT TATTTCTTAAATGTTTCCTACTTTCCTTCATATAATAGCAGTCTCATACCCTATGCAAAGCTAACCTGTTTTTGTTTTAA AATTTCTGGCCCAATGTGCAGGCTTGTCATACCAAGGCAGAGTATGAAGAATATGGAGCAAGCATTTGCAGGACAAATCC TGTTTTCAAGGGGATGTATTAAAGCAAAAAACAATTAGCTGGTCATGAATGCAGTTTCTTGATTAAAGTATTGCATGAAT GTCTAGTTATTTTGATCCTCAATTCACCTCCTTGCTTTCTTCAGGGTGGCAGAATTAAGTTAGAATATGTATATTCAGTG GAAAAAAAAAATGCATTTCCTGTTTTTATTCCCAAAGTTCGTCCTAGGCAGTCAATTTCATGTGGTTAATACGGTTCCCA GCAGGTCTAGATGGTACTTATTGTAGTTAGAAAAATGATTTTTGACAAAAAGTTGGCTCAGCTAAATTGCATTTTTTATG TTCGTTCAGCTTAGAGTTTGATGAAGTTCTGCATTTTTTTCAGTTGTTGTTGGGACTGATAATTCCATTATATACTTCTC TAGTTAGGGAGTTAAATTCATTGGGATTGAATTGTAATACTAATAAGCATTAGTGCAGGTTAGAGTTGTGTTTATGTGAA TCACATATTCTTGCACTTTTCAGTACGTAATGTACAATATATTGACTATTCATGATTTGTGATATTTACTGTCTTGTATC TTGAACTTATTCTCCCAATATTTTTGAAATAATAACTACTCTTCTTCTAGTAGCAAATTTTCTGTTAGTGAAGGTGGTTG AAGGAATGAAGGTTTTACCATTTTTACAGCACAAAATCCCACTTCTATTCAAGTAGCTTGTTCCATTTCCCATTTTCCCA TGTGTGAGGTCTTGACATCTCACTACTCTTATGTACGTGAGTAACTACTAAATGTAAGAAATAAATGATGTCCATTCATG ATTATAGAACACTGGAATAAATTGTGTACATGAAGGTTTTGATGATCTCCTTTAAATTGAAACCATAATGCTTGCGTATG AGTTAAAATGAATCACTTAAATCATCAAGCGAGCTTACTAACACCTTTCATCTGAATCATGAGTTAGTGAGTAATAAATA ATACAAACTTTTTCTCACTTATTGCCAATATTTGCTCTTCACATCATTCTGGTTTCAATCTTTATCATTTTGGTTAGATG TAATTCACAAGTCTGTTATATTTGACTTTCTAAAACGGTGTTTCCCAACTAAACAAATTAAGCTTCAACGTGTGTGTCCA ATGATGTTTGAAGCTTTATTCTAAATCTAAACAAAAATAAGGTACCATAAACAACTCTCAACGTTAAAAACTGAGTAGTT ATTATCAATTAAGCTTCTTTTATTCAAGCATGATCATATATATTAGCATGAAAAAAATCGTTGATTAGTTGGGTTTCATA ACCAAACAAACTTGACGATTACATGTCCAAATTAAAAAAACAACACGCATGCACGTGCGATCGAGAAGAAACAGATATAA ACATTAATCCTATTCCTCTCTATCTTAGCATGCATTGCTGAACCAAACGATCAGAATCAATTAGAAGTAGAAGAAGCCGG CGAGAGCGGCGGTGGCAGCTCCGGCAACAGCTGAAACTTGGTGGAGGGAAGAGGCGGCGGAAGCGGGTGCCTCAGCCTGA GCATTAGCATTGTCGAAGGCACCGGGAGGCACGGGCCCACCGATGGGAGCGGCGACAACAGTGCCGGGTGAAGGAGCGTC GCCACCCTTAGTTCCGATCATGAACTCAGTGTCATCTTCTTCGTAGTCGGACTCGTTGGTGGAGGGTGCCTCGGCGGCAC GTGCGATGCCAATGATGGCGAACATGACAAAGGCAAGAACCACAACATAGCGTGCACGTGCCATTCTGATAGAAAATATT TTTGGTTTTGTTTGTTATAAGGATGAGAGGCGCGTGCAGTTTTTCTCTAGCTACAACAAGAGAGATAGAGAAACGCTGCA AGGAAAGGGTTGATATTGTGGTGGATGCGGAGATTAAGATTTTGCAAGGAAGGGTTCTTATAGGATACAAGGTGATGCGA AGTGTGAGGAAAACCATTGGTGTCTAACCCTTTTTAGTTTGATTATAATGGGAATGTGCTCGTTTTGTGGGAACAAAAAT GACATAGTTAGTATTGTTTGTTGAATTTGTGGTATTTCAACATCTTTACTATATACATGTATGACTCTTTTATGAGAATG TGTGACAATCTTTACTTAGGCCC
CDS sequence (LotjaGi4g1v0391400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCCCGCTACTTCTCGTCCAGCTGTAGTCATCGATAATGGCTCCGGGTATACGAAGATGGGGTTTGCTGGTAATGT TGAGCCATGTTTTATTGTTCCGACAGTGGTTGCGGTTAACGAGTCCTTTCTGAATCAATCGAGGAGCACTTCTAAAGGCA ATTGGGTTGCCCAGCACAACGCTGGGGTTATGGCGGATCTTGATTTCTTTATTGGGGATGATGCGCTTTCTAAGTCGCGA TCCAGCAGCACTTACAATCTCACTTACCCGATTCGGCATGGCCAGGTTGATAACTGGGACGCCATGGAGCGCTACTGGCA GCAGTGCATATTCAACTATTTGAGGTGTGATCCTGAGGATCACTATTTTCTCTTGACGGAGAGTCCGTTGACAGCTCCTG AGAGTCGCGAGTATACTGGGGAAATCATGTTTGAGACTTTTAATGTACCTGGACTTTACATTGCTGTGAATTCTGTGCTT GCTCTTGCAGCTGGCTACACAACATCTAAGTGTGAGATGACAGGAGTCGTAGTGGATGTTGGAGATGGGTCTACTCATGT TGTGCCTGTCGCAGATGGCTATGTTATTGGGAGTAGTATCAAATCGATTCCTCTTGCTGGAAAGGATGTTACTCTTTTTG TTCAGCAGCTTATGCGGGAAAGAGGAGAGAATGTACCACCTGAAGATTCTTTTGAAGTGGCTCGTAAAGTAAAGGAAATG TATTGCTACACATGCTCTGACATTGTGAAGGAATTTAATAAACATGACAAAGAACCAGCCAAATATATCAAGCAATGGAG AGGCATCAAACCAAAGACAGGGGCTCCATATTCCTGTGATATTGGCTATGAACGATTTCTTGGCCCTGAGGTTTTCTTTA ATCCTGAGATATATAGCAGTGACTTTAGCACTCCTTTGCCAGTTGTAATAGACAAGTGCATTCAGTCTGCTCCAATTGAC ACGAGAAGATCATTGTACAAGAATATAGTGTTGTCTGGAGGATCAACCATGTTCAAGGATTTTCACAGGAGGTTGCAACG TGATCTAAAGAAAATTGTTGATGCTCGTGCCCTTTCAGCTGAAACACGTCTAAATGGGGAGATAAAATCACATCCAGTGG AGGTCAATGTACTCAGCCATCCAATCCAGAGATTTGCAGTTTGGTTTGGGGGTTCTGTGCTTGCATCAACGCCTGAGTTT TTTACGGCTTGTCATACCAAGGCAGAGTATGAAGAATATGGAGCAAGCATTTGCAGGACAAATCCTGTTTTCAAGGGGAT GTATTAA
Protein sequence (LotjaGi4g1v0391400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPATSRPAVVIDNGSGYTKMGFAGNVEPCFIVPTVVAVNESFLNQSRSTSKGNWVAQHNAGVMADLDFFIGDDALSKSR SSSTYNLTYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVL ALAAGYTTSKCEMTGVVVDVGDGSTHVVPVADGYVIGSSIKSIPLAGKDVTLFVQQLMRERGENVPPEDSFEVARKVKEM YCYTCSDIVKEFNKHDKEPAKYIKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFSTPLPVVIDKCIQSAPID TRRSLYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARALSAETRLNGEIKSHPVEVNVLSHPIQRFAVWFGGSVLASTPEF FTACHTKAEYEEYGASICRTNPVFKGMY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 200 | 197 | 1.3E-55 | – | |
| PANTHER | 4 | 419 | 416 | 3.1E-249 | – | |
| PANTHER | 4 | 419 | 416 | 3.1E-249 | ||
| SUPERFAMILY | 7 | 177 | 171 | 1.04E-42 | ||
| Pfam | 7 | 419 | 413 | 9.4E-83 | ||
| SMART | 7 | 423 | 417 | 4.7E-146 | ||
| CDD | 10 | 206 | 197 | 4.52679E-16 | – | |
| SUPERFAMILY | 173 | 423 | 251 | 6.34E-72 | ||
| Gene3D | 207 | 293 | 87 | 2.2E-41 | – | |
| Gene3D | 294 | 384 | 91 | 5.1E-27 | – | |
| Gene3D | 385 | 421 | 37 | 2.2E-6 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0391400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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