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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0397100 |
| Transcript ID | LotjaGi4g1v0397100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phototropic-responsive NPH3 family protein; TAIR: AT5G10250.2 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9LFU0|DOT3_ARATH BTB/POZ domain-containing protein DOT3; TrEMBL-Plants: tr|A0A151S3C3|A0A151S3C3_CAJCA Root phototropism protein 3; Found in the gene: LotjaGi4g1v0397100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77481718..77484961) extracted from Lotus japonicus Gifu genome v1.2.
TTCATTGCTCCGCAAATCCCAACAGACTCTTCAATTCAAGTCCAGGAAATCATTTATAATGTACACAAGGTACATATAAC ATCATAGACATACCTTATTAATGTTGAGAATCATTGACCTTCCCTCGTGATATTGGTTGTCATCAGCAGTCAATATACTA GACATGAAAATGATATCATCATATCCCTTTCTAAGTGTCTAGTAGTAAAATCCCTCATCACACTGTCATCTCAATTAGTG ACAAACTGGTGAAGAGAACAATTCTATGATAGGTTGCATAAGATACATTGATTCCTTTTCTTCCTAGAGTGTATATTTGA CTATTTGTGTGTGCTGTGCATGTCATGTATCTCATTTCCCCTTTTCAGATATTAAAAAATGAAAAAAAAAAAGTTTCTCA AGAGATAAACAGAACATCAGAGACAGATTAGGAATCCTCTTAAAACAAATAGGAGATAATAACAGGATTTTTTTAATTAC ATTTTAGTTGATATTTTTCAGTGATAAAAACCTACTATTTTTATTTTGTTTCATGTTTTCAAGATTTGGTGGACAGAGGA TCTTGGTCATTGGTGGAATATATATGTATATGTATATATATATATATATATATATATATATATTCACAGTTTCCTTAACA AAATCTTGAAAACAACAAATGGCATAAAAACATGGTCAGCTTGTTGTAATGAAAATACATCAAGTGAATATAAAGATAAC AAAGAAACCAAACACCTCACTGAGCAACTTATCTTAAACATTTCATATGTTGGCTATTTTTTCTGTAACAGTACCCCTTG ATATCAAAATGTGGCTACATAGGACGACTGGAGGTTCAGCCATTGATATCAAGTTCTAGCAAAGTGCTTAAGCTTGAAAA CTTTCCAGGAGGACCTGAAACATTTGAAACAATTCTAAAATTCTGTTATGGTCTCCATGTAGACTTCAAACCAGATAACA TAGCTGCAATAAGATGTGCATCAGAATTCCTAGAGATGACTGAGGATCTAGAAGAAGGAAATCTCATTTCCAAGACAGAA GCTTTTCTCACTTTTGTTGTGCTCTCTTCATGGAAAGACACTGTCACTGTTCTAAAATCTTGTGAAAATCTATCTCCATG GGCTGAAAACCTCCAAATTGTAAGAAGATGTTGTGATTCCATTGCTTGGAAGGCTTCTAAAGATGCTCCTACAATTGAGG ATGCAGCATCTAATCAAGAAAACTGGTGGTTCAATGATGTTGCCGCCTTCCGCATCGACCATTTTATGCGTATTATTTCA GCAATAAGGGCAAAAGAAACCAAACCAGAGATCATTGGTAAATGTATCATGCAATACGCAAAGAGATGGCTACCGGGAAT GGATGAGGAGCTGGAAGGGCTAAGAGGATATGGACATGGAAAAAGTAACCTACACTTCACTGTTTTTAGTGGGAAGGAAA AAGAAAGCAGTGCACACAGCAAGCAGCAAAAGACAATTATTGAAAGCCTAGTAAGCATACTTCCTCCTCAACAAGAAGCT GTCCCATGTAAGTTCTTGTTGCAGATGTTAAAGATGGCCATGATGTATTCTGTATCACCAGCTCTCACTTCGGACCTCGA AAAAAGAGTTGGTGTGGTGTTGGAAGATGCTGAGGTGAATGATCTTTTAATTCCAAGATATCAAAATGGAGATCAAGGAA AAACTGTCAAGTGAGTATCTAACCATTCTTTCATTAATGCAAAAAAATGACTGATGATACTTGCTGAAAAATCCCACATT GATTAGAGACATGGTCAAATAAGTGTTATAAAGGGTAGAGCAATCACCCCATAGCTAGCTTTTGGGGTAGGCAGTAGAGT TAGGCCTAAATTGAAATCTAATAATACTAAATGCAATCCTTTTATTTTCCTATTCATGTGCAGCATGAATAATTCATCTG AAGAGTGCACTATGGAAGACATAGATGTGGTGCAACGAATTGTTGAATACTTCCTGATGCATGAACAACAGCAGATGCAA CTGCAACAGAAGACTGCGAAATTCAATATTAGTAGGCTCTTGGACAATTACCTAGCTGAAATTGCAAGAGATCCAAATCT TTCAATCACCAAGTTCCAAGTTCTAGCTGAATTGCTACCAGAAAACACTCGATCGTTTGATGATGGTCTATATAGAGCCA TTGACACCTACCTCAAGGTCATCCTTTTAACTCTTATTTTCTTGTGTTTCAGTTTCCTGTTTTGAGTGTTGTAAAAAGGA TTTCAAAACAAAGTTTTGATACACTGATATTAACATCTCTCCAGACCCATCCTTCACTGACCGAGCATGATCGTAGAAGA CTGTGCAAAACAATGAACTGTGAGAAACTCTCACTTGATGCATGTATGCATGCTGCACAAAACGACCGATTGCCTTTAAG AGCTGTTGTCCAGGTAAAGTTTCAGGCTCTCTGGAACCTAATTTAAAACTAATTTCAGCTTCATACATGATAAATTAGAA GTGGCGAGTTAAGATTTCAAGTTCTTCAGAAAAAAATGATGAAATCATCATGAAACGCAATTCAGATTAGTAGCATCCGT TAACTGAGAAACACAGTAACCCAAGTGAAAACAATGTGGTATCTTTGTAATTAAAATTGACAACAGAAAATGGAAATAGA AAATGAAAACCAAACATGCCCCTAAGTCCAATTTCAATAAGAAATTTAAAATTATGCAAATAGCACTGAGGATCTGGTTC ACAAATATAGATCCCATCTAAGAAAGTGTGGGTAGCAAAACAAAAGCAAGAGAAGGAGCCAAATGGTACTTTTAGACCTA ATATGACCAAATGGTGATTCAGCTTAAAAGTTGTCACCTGAATGAGAAAGTATACTAGTGCAGGTTTTATTTCAGGAGCA AGTAAAGTTGAGGGCGGCAATGCAAGAGAAGGAGCCAGCACAAAGTGGAATCCAGACTGAACAGGACGAAAATCAGATAT CTGCAACTATCGACATAAAAACACTCAAAGCAGAACTTGAGAATGTAAAGTCTAAGATGGTAGAACTGCAGAGTGACTAT TTTGAGTTGCAACAAGAGTATGAAAAGTTAAGCAACAACAAGCCAAAGAATTCATCAGCGTGGAGTTTTAATTGGCGGAA GATTAAGAACTCCTTTCATACAAAACCAGCAGGAGTTGAAACTGGAGATGGACAGGATAAGCCCAAGACACCAAACCAGA CTCGAAGTAAAGAAACCCCTAGAAGAAGGCAATCCATGTCTTAA
CDS sequence (LotjaGi4g1v0397100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGAGGATCTAGAAGAAGGAAATCTCATTTCCAAGACAGAAGCTTTTCTCACTTTTGTTGTGCTCTCTTCATGGAA AGACACTGTCACTGTTCTAAAATCTTGTGAAAATCTATCTCCATGGGCTGAAAACCTCCAAATTGTAAGAAGATGTTGTG ATTCCATTGCTTGGAAGGCTTCTAAAGATGCTCCTACAATTGAGGATGCAGCATCTAATCAAGAAAACTGGTGGTTCAAT GATGTTGCCGCCTTCCGCATCGACCATTTTATGCGTATTATTTCAGCAATAAGGGCAAAAGAAACCAAACCAGAGATCAT TGGTAAATGTATCATGCAATACGCAAAGAGATGGCTACCGGGAATGGATGAGGAGCTGGAAGGGCTAAGAGGATATGGAC ATGGAAAAAGTAACCTACACTTCACTGTTTTTAGTGGGAAGGAAAAAGAAAGCAGTGCACACAGCAAGCAGCAAAAGACA ATTATTGAAAGCCTAGTAAGCATACTTCCTCCTCAACAAGAAGCTGTCCCATGTAAGTTCTTGTTGCAGATGTTAAAGAT GGCCATGATGTATTCTGTATCACCAGCTCTCACTTCGGACCTCGAAAAAAGAGTTGGTGTGGTGTTGGAAGATGCTGAGG TGAATGATCTTTTAATTCCAAGATATCAAAATGGAGATCAAGGAAAAACTGTCAACATGAATAATTCATCTGAAGAGTGC ACTATGGAAGACATAGATGTGGTGCAACGAATTGTTGAATACTTCCTGATGCATGAACAACAGCAGATGCAACTGCAACA GAAGACTGCGAAATTCAATATTAGTAGGCTCTTGGACAATTACCTAGCTGAAATTGCAAGAGATCCAAATCTTTCAATCA CCAAGTTCCAAGTTCTAGCTGAATTGCTACCAGAAAACACTCGATCGTTTGATGATGGTCTATATAGAGCCATTGACACC TACCTCAAGACCCATCCTTCACTGACCGAGCATGATCGTAGAAGACTGTGCAAAACAATGAACTGTGAGAAACTCTCACT TGATGCATGTATGCATGCTGCACAAAACGACCGATTGCCTTTAAGAGCTGTTGTCCAGGTTTTATTTCAGGAGCAAGTAA AGTTGAGGGCGGCAATGCAAGAGAAGGAGCCAGCACAAAGTGGAATCCAGACTGAACAGGACGAAAATCAGATATCTGCA ACTATCGACATAAAAACACTCAAAGCAGAACTTGAGAATGTAAAGTCTAAGATGGTAGAACTGCAGAGTGACTATTTTGA GTTGCAACAAGAGTATGAAAAGTTAAGCAACAACAAGCCAAAGAATTCATCAGCGTGGAGTTTTAATTGGCGGAAGATTA AGAACTCCTTTCATACAAAACCAGCAGGAGTTGAAACTGGAGATGGACAGGATAAGCCCAAGACACCAAACCAGACTCGA AGTAAAGAAACCCCTAGAAGAAGGCAATCCATGTCTTAA
Protein sequence (LotjaGi4g1v0397100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEDLEEGNLISKTEAFLTFVVLSSWKDTVTVLKSCENLSPWAENLQIVRRCCDSIAWKASKDAPTIEDAASNQENWWFN DVAAFRIDHFMRIISAIRAKETKPEIIGKCIMQYAKRWLPGMDEELEGLRGYGHGKSNLHFTVFSGKEKESSAHSKQQKT IIESLVSILPPQQEAVPCKFLLQMLKMAMMYSVSPALTSDLEKRVGVVLEDAEVNDLLIPRYQNGDQGKTVNMNNSSEEC TMEDIDVVQRIVEYFLMHEQQQMQLQQKTAKFNISRLLDNYLAEIARDPNLSITKFQVLAELLPENTRSFDDGLYRAIDT YLKTHPSLTEHDRRRLCKTMNCEKLSLDACMHAAQNDRLPLRAVVQVLFQEQVKLRAAMQEKEPAQSGIQTEQDENQISA TIDIKTLKAELENVKSKMVELQSDYFELQQEYEKLSNNKPKNSSAWSFNWRKIKNSFHTKPAGVETGDGQDKPKTPNQTR SKETPRRRQSMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 492 | 492 | 1.0E-233 | – | |
| PANTHER | 1 | 492 | 492 | 1.0E-233 | ||
| Pfam | 76 | 350 | 275 | 2.7E-97 | ||
| ProSiteProfiles | 76 | 374 | 299 | 86.206 | ||
| Coils | 404 | 438 | 35 | - | – | |
| MobiDBLite | 457 | 492 | 36 | - | – | |
| MobiDBLite | 475 | 492 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0397100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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