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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0028300 |
| Transcript ID | LotjaGi5g1v0028300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peroxisomal multifunctional enzyme type 2; TAIR: AT5G42890.1 sterol carrier protein 2; Swiss-Prot: sp|P97852|DHB4_RAT Peroxisomal multifunctional enzyme type 2; TrEMBL-Plants: tr|I3T5G4|I3T5G4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0028300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4696247..4697291) extracted from Lotus japonicus Gifu genome v1.2.
GCTGCTGCTGATTCTTCAAACCTCAAATCAGACGCCATATTTGAGCAGATGAAGCAGCATCTTTCCACCGACGCAGCCAA ACCGCTCCTTCAGAAAATCGGACTCGTTTATCAGATTCAAATTGCTCCTAAGGTCCTTTTTTTTTTCTCTTTTTTTTTTT TTAAATTCAATTTCTTGATTTTTTTCGCTGTTCATTGAATGACTTCAATTTCCAGAAACTTGGATTCGATGAAGTCATCT ACACTGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGTCTGTGTTAGTTACCTTTCAGCTGTTTTTTACATTCAATTTAT GTAAATTGTTATCATAGTCAGCCAGTCAGGGTTTTAAATTGCGATTGCAGTCTCGAAATTGCTGACAAATGCGGCGGTCA TGATGCCGATATAGAGAATCCAAAATATGTTGTAGCCACAATTGCGATTGCGGACCGCAATTTAAAACCCTCTCATAAGC ACCCATACACTGCTACTATGCAGTGTATTCTAGACTCTACAATGAGGAATTGAGTATAGAATTATGTGTAACATAGATAG ATCAGGCATTCTGAGATTTTGACTAAATGCTTTGAATCTTTTAGATTATAAATTGTTGTATAGCTACAATTTTGCTTTAA AATTGATGCTTCCTTTAAAACAAAATTCTCTAGTTATGCTTAATTTTTGCCAAATTTTATTGCTTTCTCCTCCAATGCTA TCATGTGTGATTATTTGGGGCGCGAATCTATGTTTAGGGCCATATGAAGGAGGGAAGCCAGATGCAACATTTTCATTTAA GGATGAGGACTTTGTTAAGGTTGCATTGGGGAAGATGAATCCACAGATTGCTTTCATGAGGTGAGATCTTTCAACTAGAT TTTCCCCCCTTTTTTTGTGTCGCATTTAGTCTTTGTTTATGCATTGATGTTCTTATGTTTGTTGTGGTGATGTATGGGTA CAGGGGTGCGATGAAGGTTAAGGGAAGTTTGAGCGCTGCTCAGAAATTTACCCCGGATGTTTTCCCAAAACCTTCCAAGA TGTGA
CDS sequence (LotjaGi5g1v0028300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCAGCATCTTTCCACCGACGCAGCCAAACCGCTCCTTCAGAAAATCGGACTCGTTTATCAGATTCAAATTGCTCC TAAGAAACTTGGATTCGATGAAGTCATCTACACTGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGGCCATATGAAGGAG GGAAGCCAGATGCAACATTTTCATTTAAGGATGAGGACTTTGTTAAGGTTGCATTGGGGAAGATGAATCCACAGATTGCT TTCATGAGGGGTGCGATGAAGGTTAAGGGAAGTTTGAGCGCTGCTCAGAAATTTACCCCGGATGTTTTCCCAAAACCTTC CAAGATGTGA
Protein sequence (LotjaGi5g1v0028300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKQHLSTDAAKPLLQKIGLVYQIQIAPKKLGFDEVIYTVDLKKGEVTKGPYEGGKPDATFSFKDEDFVKVALGKMNPQIA FMRGAMKVKGSLSAAQKFTPDVFPKPSKM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 103 | 103 | 4.0E-28 | ||
| PANTHER | 1 | 109 | 109 | 3.4E-48 | ||
| Pfam | 3 | 99 | 97 | 6.7E-19 | ||
| SUPERFAMILY | 5 | 108 | 104 | 9.65E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0028300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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