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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0217600 |
| Transcript ID | LotjaGi5g1v0217600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Gibberellin receptor GID1A; TAIR: AT5G27320.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q940G6|GID1C_ARATH Gibberellin receptor GID1C; TrEMBL-Plants: tr|A0A151U532|A0A151U532_CAJCA Putative gibberellin receptor GID1L3; Found in the gene: LotjaGi5g1v0217600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52367950..52370812) extracted from Lotus japonicus Gifu genome v1.2.
CTACTCTGTGTGTGTTTGTGTGATTGGCTCTTCTTCCCTGTGAATGTGTCACTTTAGCATTTTCTACAGTGCGCGCACCG TTGCTTTCTTTCTTATCCTTCACCCACCATTCCCGCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCACTCA CCACCACCACCCTCACCCTCCAACCTTCACCTCTCGATCTCACATCACACCATGCTTCACACCTCATCTTGAACAATCTC TCCGATTCTCCAACCTTCTTCCCGATCTGAATCAACCGAAAACTCGATCGTTGCCATGGCTGGCACCGACCAACTCGACC CCAATGACTCCAGGGTACGCTTACGCTTACTTTACTCTGCACCTTTTAGATTTTGATTCCATGTTTCGTTCGATTGGATA CAATCATACAAATTATCCGTACGGTATTGCTTGTTTGATTCTTCTTCATCATCATCGTTTTAGGATTTGAGTTTGAATGT TTTTGTTTTCATGGATTGATTGAGCTTAGGTTTGGTTATGTATTAGTTATTTAGTTTTGGTTGAATGATTTCCTGGTTTT ATCTTCAATGTTTAGGGTTTAGTAAATTCTATTTTTGTTAATTTTAAATGAAGTTGATAAAATTTGGTGTAGATGGTGGT TCCGTTGAATATGTGGGTTTTGATTTCCAATTTCAAGCTGGCGTACAATCTTCTTCGTCGTCCGGATGGAACTTTCAACC GTGATTTAGCCGAGTTTCTTGATCGGAAAGTTCCGGCGAACCTTAACCCTGTGGAGGGAGTGTTTTCTTTTGATGTCATT GTGGATAGGGGAACCAATTTGCTCACTCGAATCTACCGTCCGGCTGAGGGTGAAGGTCCGGTTAGCATTGTTGACCTTGA GAGGCCTGTGACCTCTGAGATTCTTCCTGTTTTGCTTTTCTTTCATGGTGGGAGTTTTGCTCATTCTTCTGCTAATAGTG CTATCTATGATACCCTTTGTCGTCGCTTGGTGGGGATTTGTAAAGCGGTTGTGGTCTCTGTGAACTATAGGCGTGCGCCT GAGAACAGGTATCCTTGTGCTTATGAAGATGGGTGGACTGCTCTTGAGTGGGTGAATTCGAGGTCATGGCTTCAGAGTAA GAAGGACAAGAAAGTTCATATCTACTTGGTTGGGGATAGCTCAGGTGGGAACATTGCACACCATGTTGCCATGAGAGCTG TGGATTGTGGGATTCAAGTTCTTGGGAATATACTGCTCAACCCTTTGTTTGGTGGGCAAGAAAGGACCGAGTCTGAAATG CGCCTAGATGGGAGGTATTTTGTTAGAATTAGAGACAGAGACTGGTATTGGAGAGCTTTTCTTCCAGAAGGGGAGGACAG AGACCACCCTGCTTGTAACCCCTTTGGCCCCAATGGCAGAAGCCTCAAAGGGGTTTCCTTTCCCAAGAGCCTTGTTGTGG TTGCTGGTTTGGACCTTGTTCAGGACTGGCAATTAGCTTATGCCAAAGGGCTTGAGAGGGCTAGCCAAAATGTGAAATTG CTATTCCTGGATCAAGCAACCATTGGATTTTACTTGCTGCCAAATAATGAGCACTTCTCTACTCTGATGGAGGAGATAAA ATGCTTTGTCAGCAGTGACTGTTTGTAGGCTTAACGTTTTGCTATACATAAAGGGGACCTTAGGATTGTGTAGGTTGTAC TAATAGGTATGCTACTTCTTAACTATTTTACAATTTGGCTTCTTTGCTGTAGTAGTAGGACTGTGCTCCCCTGTGATTAG GTACTTATCTAGTGTTAATCGTGTCGTGAGATTGGTGTAATCAGCATATAGCTATATGATATTTTCATCAGCACAATATC AGGAAATTGGGTGTTTGCTGATAGGTGAAAGCATTTTAGGACAAGGGGAGCCATTGCAATATCTTTATGGGAACCACCAA AGTTGTGATTACCCAGTCTGACTTTCAGCCAAAAAAGAGAGGAAGACAGTCAAGACACTATGCTATTTGTGGGCATGACC TTAATGCCCAGCCAGTGGGGCTTGTCGTTGCCTGGCAAGTGTTATATATTTAACTAATTTTGGAACAATGATAGGGAAAG TATATATGTTGGTGCTGTCTATTATATATTTTGTGCTGTCTCTCATGTAAGTGTTTTAAGTCTGTTTCACCTTTTCTCTA TATAGCTAATTTTACGTTCTTTTGTTTTGGGTTGTCCTTGTTCCACGATGGACAATCTTTGCAGATGTAAATGGATTTTC TTTTCATGTTATAATGTTAGGATTTGTATTATGTTTGCTTTTGTATGCATAGATATTTTTCATCATCTTATGCCACAGAG ACTGAATTTTTGCTCCAGTGTACTGTTGTCTCTGAAATTTAATTCATCAACCATGGGCTAATCATTTTGAGTTCCTTTCC AACAACTGATACTTTGATTGACAAGGAATAAGTATCTCAAGTTTCGGTTCTATTATCATGTTTGGGATGGAATTTCATTT CTGAAGAAAATTATTTCAGAAGTTCTCTTGTAAGCTGGAATATATGTACTAATTACTTTTATCAAAATAAGCTAAATTAT ATAGGATCGGAGAAATTTAGAAGCATTGATGGCAGAAGATATTATAGTTGTCTCTTTTGGGAAAGTAGTAAAAGTCCACA TAGATGTGTTGCCACTTGCCGCTCTAGCTTCCCCTTTCTAAGTGCCCCACATGATTTAAAAATTGACCAGCCGCTGAACT CATGGGAATGTTAACTCATGTTTTTTAACCGTAATCAAACAAGTGATAATAGCTGTATACTGTGCATACTACTATAATAT CCGGTCACATATATAAGCAAAAAACACATTTTAGGTTCATTCATTTAAATGACTAGATACATT
CDS sequence (LotjaGi5g1v0217600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGCACCGACCAACTCGACCCCAATGACTCCAGGATGGTGGTTCCGTTGAATATGTGGGTTTTGATTTCCAATTT CAAGCTGGCGTACAATCTTCTTCGTCGTCCGGATGGAACTTTCAACCGTGATTTAGCCGAGTTTCTTGATCGGAAAGTTC CGGCGAACCTTAACCCTGTGGAGGGAGTGTTTTCTTTTGATGTCATTGTGGATAGGGGAACCAATTTGCTCACTCGAATC TACCGTCCGGCTGAGGGTGAAGGTCCGGTTAGCATTGTTGACCTTGAGAGGCCTGTGACCTCTGAGATTCTTCCTGTTTT GCTTTTCTTTCATGGTGGGAGTTTTGCTCATTCTTCTGCTAATAGTGCTATCTATGATACCCTTTGTCGTCGCTTGGTGG GGATTTGTAAAGCGGTTGTGGTCTCTGTGAACTATAGGCGTGCGCCTGAGAACAGGTATCCTTGTGCTTATGAAGATGGG TGGACTGCTCTTGAGTGGGTGAATTCGAGGTCATGGCTTCAGAGTAAGAAGGACAAGAAAGTTCATATCTACTTGGTTGG GGATAGCTCAGGTGGGAACATTGCACACCATGTTGCCATGAGAGCTGTGGATTGTGGGATTCAAGTTCTTGGGAATATAC TGCTCAACCCTTTGTTTGGTGGGCAAGAAAGGACCGAGTCTGAAATGCGCCTAGATGGGAGGTATTTTGTTAGAATTAGA GACAGAGACTGGTATTGGAGAGCTTTTCTTCCAGAAGGGGAGGACAGAGACCACCCTGCTTGTAACCCCTTTGGCCCCAA TGGCAGAAGCCTCAAAGGGGTTTCCTTTCCCAAGAGCCTTGTTGTGGTTGCTGGTTTGGACCTTGTTCAGGACTGGCAAT TAGCTTATGCCAAAGGGCTTGAGAGGGCTAGCCAAAATGTGAAATTGCTATTCCTGGATCAAGCAACCATTGGATTTTAC TTGCTGCCAAATAATGAGCACTTCTCTACTCTGATGGAGGAGATAAAATGCTTTGTCAGCAGTGACTGTTTGTAG
Protein sequence (LotjaGi5g1v0217600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGTDQLDPNDSRMVVPLNMWVLISNFKLAYNLLRRPDGTFNRDLAEFLDRKVPANLNPVEGVFSFDVIVDRGTNLLTRI YRPAEGEGPVSIVDLERPVTSEILPVLLFFHGGSFAHSSANSAIYDTLCRRLVGICKAVVVSVNYRRAPENRYPCAYEDG WTALEWVNSRSWLQSKKDKKVHIYLVGDSSGGNIAHHVAMRAVDCGIQVLGNILLNPLFGGQERTESEMRLDGRYFVRIR DRDWYWRAFLPEGEDRDHPACNPFGPNGRSLKGVSFPKSLVVVAGLDLVQDWQLAYAKGLERASQNVKLLFLDQATIGFY LLPNNEHFSTLMEEIKCFVSSDCL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 341 | 341 | 1.5E-97 | ||
| PANTHER | 7 | 342 | 336 | 1.1E-184 | – | |
| PANTHER | 7 | 342 | 336 | 1.1E-184 | – | |
| SUPERFAMILY | 39 | 333 | 295 | 7.82E-51 | ||
| ProSitePatterns | 107 | 123 | 17 | - | ||
| Pfam | 107 | 320 | 214 | 3.3E-56 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi5g1v0217600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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