Transcript — View — Lotus Base

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LotjaGi5g1v0228200.3

Overview

Field	Value
Gene ID	LotjaGi5g1v0228200
Transcript ID	LotjaGi5g1v0228200.3
Related isoforms 3	LotjaGi5g1v0228200.1 LotjaGi5g1v0228200.2 LotjaGi5g1v0228200.4
Lotus japonicus genome version	Gifu v1.2
Description	Dehydration-induced 19-like protein; TAIR: AT3G05700.1 Drought-responsive family protein; Swiss-Prot: sp\|Q84J70\|DI193_ARATH Protein DEHYDRATION-INDUCED 19 homolog 3; TrEMBL-Plants: tr\|I3T2U3\|I3T2U3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0228200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:53541608..53544821) extracted from Lotus japonicus Gifu genome v1.2.

ATGGACGCTGATTCCTCTTGGACTGCTCGTCTCTCTTCTGCCTCCAGGCGCTATCAATCCGCTCTCCAATCTCGATCAGG TTCATTCACCTCTCAATTCAATCCAAATCAAATTCCCCTTTTTTTTTCCTTCCCCTTCTTCAATTTCTTGCTTAATTCGT TGTAAGAACAAGGTTCCTTTGATAAAAACTAAAAATTGATTCAAAAGCTGTAATAAAAAACTTAGCTTCAGATACACTAG CACTGTTAGAACTCACACGCAAGTGGGTCTTTATGGCTTTGATTCACATCTACGAAAAATTAAATAAAAATTAAGACTTG ATGGGAAAAAATTGATTTTTCATTTTTCTCTCTGTCACTTGGTAGTTTTATGCTTGATTTTTTTTTTCATTTTCGGTTGT TTGATGTGTTTGAAATGGGAGTTATGTGAAATCAGAGGCATGATTTCTCTAAAAAGCATAATCCAAACTGCTATCTGGTG TGGTGTTTTATTTTCTGCTGAACATGGTAGTTGTGATAGCAATGACAATTGGGATTTGTGATGTATGGGTCTTGGTTAGC CAGACTAAATTGTATGGCTTTACTGGTGTGCTTGTTTATGTTTGAGTATTTAGTATTGATGTCTCCTCTTGTATTTACTG ATATGGGATTGTGTGAGTGTAGATATGTTCATGGGTTTTGATGAAAATGATGTGGACGATGACGTAAGGGAGGAGTTTCT ATGCCCCTTTTGTTCGGAGTATTTTGATATCGTTGGATTGTGCTGCCACATTGATGAAGAGCATCCAATGGAGGCGAAGA ATGGGGTATGGCTTCTTTCATTTGCCTTTCAACAGTTTTTCCAAGCAACTTTCAAGTTTTGCTGTCTGATAGATGTTCAA TTTGTGCTTAGCCTTTAAAAGCTTTTGTTCATTCCTACATATCTTTCACCCTCTACTTCTTATAAGTGAACTGAATATGA TATTTTGATGTTTAAGCTGGAAAAAAGTGATATATTTTATCAGAGGAATCAATATTTTTTCTGATTATACCATCTCTTTG TGCAGGTATGTCCAGTTTGTGCATCGAGGGTGGGGGTTGATATGGTAGCGCACATTACCCTACAACATGGAAATATATTT AAGATATCCTTTTTCTTTTGTTAAATTTGGTTTTATGAATTCTCGTATGGTTGGTTCTTACTTCTTAGCACAAAACTTTG CGGTTAATTGCCGGGTTCTTTGACAAATTTTATTACAGAATGAATAATGTTGCCAAAAGTATACCTTATTCTAAAGTTTT AGTTTTTTATAAATAAAAAAAAATACCCTATTACTTGGTTGAATTCCTTAACTAGGGAATACATGCAGCGCAAAAGGAAA TCACGTAAAGGTGGGTCTTATTCAACGCTATCATTATTGAGGAAGGAACTGCGAGAAGGAAATTTGCAATCCCTTTTTGG TGGGTCTTCGTGTATAGTGTCCTCATCTAATTCTGCAGCTGATCCACTGTTGTCGTCGTTTATATCGCCTTTAGCTAATG AACCTACCAGTTCTCAGCCTCATTTGCACACTGAGACAAGATCAACCAAGAAAAGCTTGGATGAGACTGTATCAAAAAGG TATTTCTGTTTCATTTTTAATCTTTGAAAGGAATGCCACACCCTCTTCACAGAATCCTGTTCTATATTATGCAATTATTC CTGAATGAGTTGATGATGCTATCCTCTTCCCATTTACTGTTATTCATGCAATAACACAATAGTTAGTTTATACATGTATC AAATGTTTTAATAAATTATTTTGTACAATTCTTAATTTCTAATTTTACAAATTCTGATAAGATTGTGTTCACTGTAATGA TTTTCCTCCTCCATGTCCTCTCTCACAATCACTAGACACACACACATGATGAGAAGCGAATGGCTTGTTTGGTTTTTGTT TTCATGTTCAGTTTTCATTTGTTTTCAATTTTAATTACAAAAAAGGCCACTTTATTTTCATTGTACTTATTATTTTCAAA TATTTGTATGGGAAACAGTGAAAACAATAAAAAGTTATCATCCCTGTTTCTTTTACATAATTTTGAGAACAGGGAACAAA TTTAGAACAAGGTAGAACTTTTTATAGCTTCCGGCCTATTCAATAAATATTCTATTTGTCCTCTATAAGGGGAATTCAGT AATATGAGTTGTTCACAACCTGTCCCATTCCATTGACCCAACCCATCCTGAACTATTCAGGTTGCATCTGAGCCTGCCCA CCTAGCACAAGAAATATTAGTGTCAGCATGGGTCGCATTTGGTAACCTGGCATGAGTTTGGGATACTTGGAATGAATATA GGTCAACCTTTGGGTGTTATTTGAAATTATTTATTACTTAAAGATTCAACCTTAGTATATTCTTTTAATTAGTTAAGTTC AATATTTTCCCATTTACTTCTAAAACACATTCTATGTGTAAATTCATAGTGATATATTGTGGTTATTCTCTTAGTAATCT CCTGAAACTAAAGGAAGTGAAAAAATGCAGGCATACATTGAGAAGAGTTATAATGTATATGATATATGGCGTTTTAAATC ATTGGTATATAAACATTTCATGATTTTGCTTAGTTTATTCCTCTGGTCAACCCAATCCCATCCCACTTATACTCAATCTT AACTAAACCCAATCGTCGAGTTTCTTTGGGTTGATGATTGGTCAAAAGAATTGGCACAGTCTAAAATTAGGATTTGGTAA TGGACAAATGAAAACTCCTAGCTCCCACCATGGCAGGGTCCAAGGAAGGGCTGGATCTGATGTTGGTTTACTATTGTAGT TTGTAGGCAATCTCATCTTGCATTTGCAAGAGGCTGAATTTAAGAGTCGAATCTAATAACCTCTTGGCCACATGTCACTA ACTTAAGCGTCACGTCTAGGCTCCCCTTCATTCTATTTGGTTTCTATAACTATGTATCTTTTAATAATGTGATCACGTAT GTTTTTGTAACCTTCTTGACCAATAAATTTAGTGTCTTGTTGCAAAACTGTTATTCCTTGCTTAACAATAATACGCAAAA GTTGCACCAGTTCAATTTTAACCTATTATCTCCTTGTTTCTAACAAAGTCAACATTTCTGTTCAGGAATGTGGAGACACC AACCTTGTCAGACAAAGATAAGGAGGAGAATGCAAAAAGATGTGAGTTTGTTCAAGGTATGTTGCTGTCCACCATGTTGG ATGACGACTTATGA

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0228200.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACGCTGATTCCTCTTGGACTGCTCGTCTCTCTTCTGCCTCCAGGCGCTATCAATCCGCTCTCCAATCTCGATCAGA TATGTTCATGGGTTTTGATGAAAATGATGTGGACGATGACGTAAGGGAGGAGTTTCTATGCCCCTTTTGTTCGGAGTATT TTGATATCGTTGGATTGTGCTGCCACATTGATGAAGAGCATCCAATGGAGGCGAAGAATGGGCGCAAAAGGAAATCACGT AAAGGTGGGTCTTATTCAACGCTATCATTATTGAGGAAGGAACTGCGAGAAGGAAATTTGCAATCCCTTTTTGGTGGGTC TTCGTGTATAGTGTCCTCATCTAATTCTGCAGCTGATCCACTGTTGTCGTCGTTTATATCGCCTTTAGCTAATGAACCTA CCAGTTCTCAGCCTCATTTGCACACTGAGACAAGATCAACCAAGAAAAGCTTGGATGAGACTGTTGCATCTGAGAATGTG GAGACACCAACCTTGTCAGACAAAGATAAGGAGGAGAATGCAAAAAGATGTGAGTTTGTTCAAGGTATGTTGCTGTCCAC CATGTTGGATGACGACTTATGA

Download CDS Sequence

Protein sequence (LotjaGi5g1v0228200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDADSSWTARLSSASRRYQSALQSRSDMFMGFDENDVDDDVREEFLCPFCSEYFDIVGLCCHIDEEHPMEAKNGRKRKSR KGGSYSTLSLLRKELREGNLQSLFGGSSCIVSSSNSAADPLLSSFISPLANEPTSSQPHLHTETRSTKKSLDETVASENV ETPTLSDKDKEENAKRCEFVQGMLLSTMLDDDL

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31875:SF26 View details on PTHR31875:SF26 Search for proteins/transripts with this domain View external data on PTHR31875:SF26	1	74	74	7.6E-75	–
PANTHER	PTHR31875 View details on PTHR31875 Search for proteins/transripts with this domain View external data on PTHR31875	1	74	74	7.6E-75	IPR033347 Show description in modal box View details on IPR033347 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF05605 View details on PF05605 Search for proteins/transripts with this domain View external data on PF05605	44	73	30	6.8E-9	IPR008598 Show description in modal box View details on IPR008598 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR31875:SF26 View details on PTHR31875:SF26 Search for proteins/transripts with this domain View external data on PTHR31875:SF26	75	192	118	7.6E-75	–
PANTHER	PTHR31875 View details on PTHR31875 Search for proteins/transripts with this domain View external data on PTHR31875	75	192	118	7.6E-75	IPR033347 Show description in modal box View details on IPR033347 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF14571 View details on PF14571 Search for proteins/transripts with this domain View external data on PF14571	88	188	101	2.8E-34	IPR027935 Show description in modal box View details on IPR027935 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	129	173	45	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0228200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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