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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0266800 |
| Transcript ID | LotjaGi5g1v0266800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Exocyst complex component sec15B; TAIR: AT3G56640.1 exocyst complex component sec15A; Swiss-Prot: sp|Q9LXX6|SC15A_ARATH Exocyst complex component SEC15A; TrEMBL-Plants: tr|A0A151TS89|A0A151TS89_CAJCA Putative exocyst complex component 6; Found in the gene: LotjaGi5g1v0266800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:57875394..57877824) extracted from Lotus japonicus Gifu genome v1.2.
TTTGTGGTGATCTTGATTTTGTAACATGCTCATATGTTTCCAGAATCCAATAATTCATCTGAGGATGGAATCCAAATCGA AAAGGATAACCGATTTAGAGAATGGTGATGAGGGAGAAGACTTAGTTCTAGCTACTTTGGTTGCAAATGGAGATGACATT AGCCCTCTTGTGAGGCATGCTTTTGAAATGGGGCGCCCCGAGGGTTTGCTCCGCCAGCTGAATTATGTGGTCAAGAAAAA AGAAGCCGAAATCGAAGAGATGTGCAAGACACATTATGAGGAATTCATCCTCGCGGTCGACGAGCTTCGCGGCGTCTTAG TTGATGCTGAAGAGCTCAAGAGTGAGCTCCAGAGTGATAATTTTAAGCTGCAGCAGGTTGGGAGCACCCTCCTTGTCACG CTTGAGGAGCTTCTTGAGTCTTATTCTGTCAAGAAGAATGTGACTGAAGCGATTAAAATGTCAAAGAATTGTATACAGGT GTTGGAGCTTTGTGTCAAGTGCAACAATCACATTTCCGAAGCTCAGTTCTACCCTGCGCTGAAAACGTTGGATTTAATTG AGAAGAGTTATATGCAGAACATTCCTGCCAGAGCTCTCAAAATTGTGATAGAGAAGAGAATTCCTTTCATAAAAATGCAC ATTGAGAAGAAAGTTTGTAGTCAGGTTAATGAATGGATGGTCCACATTCGGAGTTCTTGTAAAAAAATTGGGCAGACAGC AATTAGTCGTACTGCATCGGTTCGCCAGAGGGATGAGGAAATTCTAGAAAGGCAAAGAAAGGCTGAAGATCTAACTACTT CAGGAGCGGAGGATCAAGCTTATAGTTTGGATGTTGAGGAAGGGGATGAAGATTCCGCTATGAAGTTTGATCTCACGCCT CTTTATCGTGCTTGTCATATCCATCGCTGTATGGGGATCCTAGAGCAGTTTCATGACTATTATTATAAGAATAGATTGCT ACAATTGAATTCAGACTTGGAGATTTCTTCAGCACAGCCTTTTGTCGACTCGTATCAGACATTTTTGTCTCAAATTGCTG GGTATTTCATAGTGGAGGATAGAGTTTTGAGCACTGCTGGGGGACTTTTGGTACCAGATCAGGTTGAAACTATGTGGGAA ACTGCTTTAGCTAAGATGACATCAATGTTGGATATGCAATTCTCACATATGAACTCTGCCAATCACCTTCTACTGGTTAA GGATTATGTGACACTTGTTGGATCTACTCTAAGGCAATATGGATATGATATAGGTCCACTTCTTGATGTTCTTGACAATT GTCGCGACAAATACCATCTACTTCTTTTGGAAGAATGTAGGCAACAAACTGTTGATGTTATTTGCAATGACTCTTATGAG CAGATGGTGATAAAAAAGGACAGTGATTATGAAAACAATGTTCTTGCATTTAACCTTCAAACTTCAGATATTATGCCTGC TTTTCCTTATGTAGCACCATTCTCCTCCATGGTCCCTGATGCTTGTCACATTGTGAGATCCTTCATCAAAGCCTCTGTTG ATTACTTGTGCCACGGTGTGCGATCCAGTTTCTTTGAGATTGTGAGGAAGTATTTGGACAAGTTCCTGATCGAAGTATTG AATGAAACATTACTTGATACAATCAACAGCGGGAGTATCACCGTTTCTCAAGCCATGCAGATTGCTGCAAACATAGCTGT TCTTGAAAGAGCTTGTGATTTTTTCCTTCGACACGCAGCTCAACAATGTGGTGTACCAAGCCGATCAGTTGAGAGGCCTG CAGCCGCGTTATCTGCAAAGGTTTTACTCAATACTTCAAGGGATGCGGCTTATATTACACTGCTGGGTTTGGTAAACACA AAGTTAGATGAGTACATGAATCTTACGGAATGTGTTAATTGGACTACGGAGGAGGCAAAGACGAATGGGAACGACTACAT GAATGAAGTGGTGTTTTATCTTGATTCCCTTATGTCAACAGCACAACAAATTTTACCCTTAGATGCCATGTACAAAGTCG GGACAGGCGCGCTTGAGCACATTTCCAATGTAATTGTGGCTGCTTTCCTTAGTGATAATATCAAAAGGTTCAATGCAAAT GCAGTTATGAACATGAACAATGATGTTAAGATGTTGGAAAATTTCGCGGATGACAAGTTCTATTCTTCTGGCTTGGGTGA AATTTACGAGGGTAGCTTCAAGAGCTGTTTGATTGAAGCGCGGCAATTGCTTAATCTTTTGTCAAGCAGTCAACCTGAGA ACTTCATGAATCCTGTTATAAGGGAGAAAAATTACTACTCTTTGGATTACAAGAAGGTGGCTAGCATTTGTGATAAATTC AAGGATTCTCCAGATGGGATCTTTGGAAGCCTTTCAAATAAAAATACAAAGCAAAGTGCTAAAAAGAAATCAATGGACAT GCTCAAAAAGAGACTTAAGGATTTTAATTGA
CDS sequence (LotjaGi5g1v0266800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCATATGTTTCCAGAATCCAATAATTCATCTGAGGATGGAATCCAAATCGAAAAGGATAACCGATTTAGAGAATGG TGATGAGGGAGAAGACTTAGTTCTAGCTACTTTGGTTGCAAATGGAGATGACATTAGCCCTCTTGTGAGGCATGCTTTTG AAATGGGGCGCCCCGAGGGTTTGCTCCGCCAGCTGAATTATGTGGTCAAGAAAAAAGAAGCCGAAATCGAAGAGATGTGC AAGACACATTATGAGGAATTCATCCTCGCGGTCGACGAGCTTCGCGGCGTCTTAGTTGATGCTGAAGAGCTCAAGAGTGA GCTCCAGAGTGATAATTTTAAGCTGCAGCAGGTTGGGAGCACCCTCCTTGTCACGCTTGAGGAGCTTCTTGAGTCTTATT CTGTCAAGAAGAATGTGACTGAAGCGATTAAAATGTCAAAGAATTGTATACAGGTGTTGGAGCTTTGTGTCAAGTGCAAC AATCACATTTCCGAAGCTCAGTTCTACCCTGCGCTGAAAACGTTGGATTTAATTGAGAAGAGTTATATGCAGAACATTCC TGCCAGAGCTCTCAAAATTGTGATAGAGAAGAGAATTCCTTTCATAAAAATGCACATTGAGAAGAAAGTTTGTAGTCAGG TTAATGAATGGATGGTCCACATTCGGAGTTCTTGTAAAAAAATTGGGCAGACAGCAATTAGTCGTACTGCATCGGTTCGC CAGAGGGATGAGGAAATTCTAGAAAGGCAAAGAAAGGCTGAAGATCTAACTACTTCAGGAGCGGAGGATCAAGCTTATAG TTTGGATGTTGAGGAAGGGGATGAAGATTCCGCTATGAAGTTTGATCTCACGCCTCTTTATCGTGCTTGTCATATCCATC GCTGTATGGGGATCCTAGAGCAGTTTCATGACTATTATTATAAGAATAGATTGCTACAATTGAATTCAGACTTGGAGATT TCTTCAGCACAGCCTTTTGTCGACTCGTATCAGACATTTTTGTCTCAAATTGCTGGGTATTTCATAGTGGAGGATAGAGT TTTGAGCACTGCTGGGGGACTTTTGGTACCAGATCAGGTTGAAACTATGTGGGAAACTGCTTTAGCTAAGATGACATCAA TGTTGGATATGCAATTCTCACATATGAACTCTGCCAATCACCTTCTACTGGTTAAGGATTATGTGACACTTGTTGGATCT ACTCTAAGGCAATATGGATATGATATAGGTCCACTTCTTGATGTTCTTGACAATTGTCGCGACAAATACCATCTACTTCT TTTGGAAGAATGTAGGCAACAAACTGTTGATGTTATTTGCAATGACTCTTATGAGCAGATGGTGATAAAAAAGGACAGTG ATTATGAAAACAATGTTCTTGCATTTAACCTTCAAACTTCAGATATTATGCCTGCTTTTCCTTATGTAGCACCATTCTCC TCCATGGTCCCTGATGCTTGTCACATTGTGAGATCCTTCATCAAAGCCTCTGTTGATTACTTGTGCCACGGTGTGCGATC CAGTTTCTTTGAGATTGTGAGGAAGTATTTGGACAAGTTCCTGATCGAAGTATTGAATGAAACATTACTTGATACAATCA ACAGCGGGAGTATCACCGTTTCTCAAGCCATGCAGATTGCTGCAAACATAGCTGTTCTTGAAAGAGCTTGTGATTTTTTC CTTCGACACGCAGCTCAACAATGTGGTGTACCAAGCCGATCAGTTGAGAGGCCTGCAGCCGCGTTATCTGCAAAGGTTTT ACTCAATACTTCAAGGGATGCGGCTTATATTACACTGCTGGGTTTGGTAAACACAAAGTTAGATGAGTACATGAATCTTA CGGAATGTGTTAATTGGACTACGGAGGAGGCAAAGACGAATGGGAACGACTACATGAATGAAGTGGTGTTTTATCTTGAT TCCCTTATGTCAACAGCACAACAAATTTTACCCTTAGATGCCATGTACAAAGTCGGGACAGGCGCGCTTGAGCACATTTC CAATGTAATTGTGGCTGCTTTCCTTAGTGATAATATCAAAAGGTTCAATGCAAATGCAGTTATGAACATGAACAATGATG TTAAGATGTTGGAAAATTTCGCGGATGACAAGTTCTATTCTTCTGGCTTGGGTGAAATTTACGAGGGTAGCTTCAAGAGC TGTTTGATTGAAGCGCGGCAATTGCTTAATCTTTTGTCAAGCAGTCAACCTGAGAACTTCATGAATCCTGTTATAAGGGA GAAAAATTACTACTCTTTGGATTACAAGAAGGTGGCTAGCATTTGTGATAAATTCAAGGATTCTCCAGATGGGATCTTTG GAAGCCTTTCAAATAAAAATACAAAGCAAAGTGCTAAAAAGAAATCAATGGACATGCTCAAAAAGAGACTTAAGGATTTT AATTGA
Protein sequence (LotjaGi5g1v0266800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLICFQNPIIHLRMESKSKRITDLENGDEGEDLVLATLVANGDDISPLVRHAFEMGRPEGLLRQLNYVVKKKEAEIEEMC KTHYEEFILAVDELRGVLVDAEELKSELQSDNFKLQQVGSTLLVTLEELLESYSVKKNVTEAIKMSKNCIQVLELCVKCN NHISEAQFYPALKTLDLIEKSYMQNIPARALKIVIEKRIPFIKMHIEKKVCSQVNEWMVHIRSSCKKIGQTAISRTASVR QRDEEILERQRKAEDLTTSGAEDQAYSLDVEEGDEDSAMKFDLTPLYRACHIHRCMGILEQFHDYYYKNRLLQLNSDLEI SSAQPFVDSYQTFLSQIAGYFIVEDRVLSTAGGLLVPDQVETMWETALAKMTSMLDMQFSHMNSANHLLLVKDYVTLVGS TLRQYGYDIGPLLDVLDNCRDKYHLLLLEECRQQTVDVICNDSYEQMVIKKDSDYENNVLAFNLQTSDIMPAFPYVAPFS SMVPDACHIVRSFIKASVDYLCHGVRSSFFEIVRKYLDKFLIEVLNETLLDTINSGSITVSQAMQIAANIAVLERACDFF LRHAAQQCGVPSRSVERPAAALSAKVLLNTSRDAAYITLLGLVNTKLDEYMNLTECVNWTTEEAKTNGNDYMNEVVFYLD SLMSTAQQILPLDAMYKVGTGALEHISNVIVAAFLSDNIKRFNANAVMNMNNDVKMLENFADDKFYSSGLGEIYEGSFKS CLIEARQLLNLLSSSQPENFMNPVIREKNYYSLDYKKVASICDKFKDSPDGIFGSLSNKNTKQSAKKKSMDMLKKRLKDF N
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 9 | 801 | 793 | 4.2E-242 | ||
| PANTHER | 14 | 801 | 788 | 0.0 | – | |
| PANTHER | 14 | 801 | 788 | 0.0 | ||
| Coils | 91 | 111 | 21 | - | – | |
| Gene3D | 409 | 582 | 174 | 6.9E-30 | ||
| Pfam | 455 | 765 | 311 | 3.3E-79 | ||
| Gene3D | 591 | 740 | 150 | 2.6E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Exocyst | A protein complex peripherally associated with the plasma membrane that determines where vesicles dock and fuse. At least eight complex components are conserved between yeast and mammals. | ||
| Biological process | Vesicle docking involved in exocytosis | The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, that contributes to exocytosis. |
Expression pattern of LotjaGi5g1v0266800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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