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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0005300 |
| Transcript ID | LotjaGi6g1v0005300.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | cotton fiber protein; TAIR: AT4G14380.1 cotton fiber protein; Swiss-Prot: sp|Q11S24|PYRG_CYTH3 CTP synthase; TrEMBL-Plants: tr|A0A0L9TYB4|A0A0L9TYB4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0005300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1039014..1042994) extracted from Lotus japonicus Gifu genome v1.2.
AGCTCCTTGCATTTGGAGACATTCTTTCTTCAAAGCCTCCCCCCCCCCCCACCATCAAACTCTTTCTCTCTTCCTCTTTC AAACCAAAAACTCTTCATTTTGTGATGTCTCGCCTGAAGCTAGCAAAGAAGCTTCAACCTGCCAAGAAGGCATGGAAGTG CTTTTCCAACAAACTCCAATCCAAAATCCACAAAGTCAACCTCTCCAAGGCCATCAAAACCACCCTCCAGAACCTCCTTT CAGCCTTCAAATCACTCATTCATCTCATAAACTCAAGCCTTCACCGCACCCTCGCTGCTACTAGAACATATTCTACTTAT CATCACTATCATGTTCAAAGCAAGAACATATCAGCAATACACATAGATGACCTCTTTGCTGAGAAGGGTACTCATCATCA TCATCATCATCATTCACAAGGGGAAACAAGCAGAGAAGTGAATCATGGTGAGAGCAGTGGCTTGAATAGTATTGAGGATG CATGGAAGGCTGTGGTTGCTAGGTCTCCACATCTGCAAGTGGATCAGAGGGCAGAGGAATTCATCTCCAAGTTTCATGAA GACATGAGGCTTCAGAAAGAGAGGTCCATGATTGAATTTCAGGAGATGCTAGCAAGGAGTGCCTAAAAATTTGATCTCAA CTACTATTCTTTTTTCTAATTAGACATTAAGTACACAATTTAATATATGATGATGATGCATAGAGCATGATGGTTACATT TTTTTTCTTTCATTTTCATTGAGAAGCAAAGTAAGCATGCACAATTGCACATAGTGGTTTTGCAGTGATGTGTGGAGAAG TGAAGATGTATAGGAAACAGAGGCTTTTGTGAGACTTTTTTTTTTTCATTATTTGTATTCTTTTTTCTCTTGCTTCTCAC AGTAAAAACCTGATCGATACCAACGGTGGTTCGTTCAAGGGGTATGTTCTCCATAATTCGAGTCTTGTACACGAAAAATA ATCCTTGCTGAAAAATCTTGCCAATCTAAGATGTAGATGTTCCCGTGGAAGATTTATGTATCAAACCAAACAAAACTGAT CAATTGTGCATTATGTTTAAAAGTTAAATCAGATCACAAGGGTGTGTAAGTGTGTATGGAATCTGTGTTAGCAAGTGAGT GTTCAGAATTATTTTTTTCGTTGAATAATACACTGGTTGGTATGAGTTGGTTGCTGCAAATTATTAATTTGACTTTACCT AATCATGTTCTTCTAAGTTCTATCTATGTCCATACATCCAAGTTCTCTTCTAGCTAACCTCAATTATTTTTATTTGCTTT ATTAGGCAATTAATAATGGTTTGGCATGCCATTTCAGCTAGCTTATAACTTATTTGACTAGCTTAAAACTTATTTTATAA CTTCGTATATTAAGAGAACATATTGAGTACCCTCTCTGGAAGCTAAATATTTGCATGTGCTTGACAATTTTTTCAGGAAT ATATACGAGATGGCATTGACTGGGCTAAAGTTGAATTATACCTGTACCCTTCCTTGGATGCTGTCATTTCGGTTCAAACT AATTTACGGAAGGCACACTTCCATTGGCAATGGATTCACTCTTCTCCTTATCTCTCTATGTGGATAATGATGTCTTATGC TTGATTGTGTTGTGTTTATTAGGGTTTCATTTCGATTACATTTCAAATTTGTTGTTTTGTATTTGATTTAGGTTTGAAAT TGATATTGTTAACTTATAATTTTTATTTCAGATCTTTCTCTCTTTGAATGCTGCAATTTAAGATTTGGATTTGTGGGAGA TGGTGATTCCGGTGTTGTGTTGCAGGTTTTGGATGCATGTGTCGATCATAAGATGCGTTCAGTCTCTCATACAATACTTT CTTGATTCTTCACTCTACTCCACCCTCACAACATCGATTCTCAGAATTGAAGGGAATATGAAGAACACCTCTGTCCAAGC ATAGTTGCCTATGCTACAGTCCCCGGAAAAGAAGCAGGTACCACCAGTATAAATAATAATGCTAGGAAATCATCTTGCTC CTGTTCAGGTTTCTATTTGTCTATTCGCTTTGTGTATTATTCCTAATCTAAAGAAATTAAAGCTAGGAAATTCCAGATAA ATTTTGTTATAGATGCATGTGTCTCTTAGTTGGATAGTGAGTCTAAATTTTAGATGTTAATGTCCTATAATGATAATTCC TATGATTTCCATCTCAGCTTACATCGTCTTGTGATATCATAAACAGGTATTGATTTTGCAGCAATATATTTTCTAAATTT GGATAATTTTCATATAAATAGGTAACTTTTGTTTGTAATCAATGTATGGTATTGGTGAAATTTAAACCGTGCATTTTTTA TTTTTCTATTGAGGGGCTTGTGTAGGGTGTCCTGCAGGTGAAGAAGGAGTATCCGATTCATTTTCTTTTCTTCTTTTCTT TACCTTTATTGTCTTAATTTCTTATCATGAGCTCATGTGCGTCTATATGCTCAAGTCGGTGTATATTGCTCATGTTTGTT CAATGTTTATGTTATTGTTTAGGTTTTCATTTGTCACCACTAGCCAATAATATGAGAAAACTGATGTGTGTGTTCTCTAA AACCACACAAGAAACTGTTAATTGCATTTCATTCTTAAGTACTTTTTCTGATAATATAGTATGTCGGTGTATATCTGCAT AGCATGTTGATTTCACTAATCTTGTAGGTAACATGTATATGCAGGTAGCTTGTAACATCCACTTCACAAGTGACAAGAAG AACCAAATTAACACCATCTTCTTTTAATGTGACAAAGTAATGTGAGAAAGTCTTGATTTGATCATTTATGTGAATGACAA CTTCAAAGGCCATCTCTGTTTCTTAATGTAAGAACTGCACATTCTCTTTTTGCTTCCCTTTTCTTTTCAAATAGTTAGAA TTAGAATGAACTAATGTTGTTAAGCTCATTTTATTAGCTTTCAATTTTTCTTTTTAATTTGGTTTTAGTTTAAATATGTA CTTAGTTATCTATTATGTGAATAAAGGTTGATTTGTTGTAATCATGAAAAATCAATCGTTATTCTTTTTTGTTCGTGTTC ATTTTATTCTATATTCCTTTATGAAATGCTGACATGGGTTCACCAGTATAGTATAATAGTCCTTGCTTCTATTGTAATAC CTGTTGTTGGACAGTGAACACCAAGGTGGACATGTGCTTCAATGTTAAAAATGCATATTGGCTAAGTGACGGGGTCAGAG AGAAGATTATACAAATGGTTAGTTTGCTGCCACTTATCATTTCTCATCCTTATAAAATCAAATGATTATCTAATTATTTG TTTGATGTAAAACCATTATCTACACTTTCTCCTACATGCTAACTTTTTGAACTAGTTGATTTATCATATGATATATGCTC ATTACTCACAGCTCATCTAGCTTATAGTTTAATTGTTTTGAATTCCTTAGCATGATAAAGACCATATCAAGATGGATGAG GAGCTTGAGATTTCTTCCACCAGAACTAGAAAGCAGAAGTTTGTCTTCTCACATTTGTTGTCTGCTTCCTTCTATATTGT AAGATTGATCCTTATGCTATCATTTTATCTTCAAGGGTCTTTTATTAAATTCTTTAAAAGCATGCTTAAATTTTTTAACT TGATCGAATTTAGCATTATCAGAATGTGTTTGTTTGATTATTGACCTTATTTAGGTATATATGTTGTTCAATTGTTTGGT ATGGCTCTTCTCGGTTATCCATACAAGCAGCTCAATGATGTAAATCATTTGTGCATTTTATTTATGTTATTTACTGGCGG TTTGTTGCTAACCAGTAGGCACAATGAACTGGCAAAAATTCATGTCAATGGCCATCTGATTAAGGTATTACATCAATGAG ATGTTACTGTGCTTATATGCTATACCTTGTTTTAGCTTATGTTACTGTGTTATACCTTGTTTTAGTTTGGTGATGTGTAT TGATTTTGCAGTCAGCTTTCATAGCTTTTGAAATGTGTACCCTTTCGGTTAAATTATGATC
CDS sequence (LotjaGi6g1v0005300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCGCCTGAAGCTAGCAAAGAAGCTTCAACCTGCCAAGAAGGCATGGAAGTGCTTTTCCAACAAACTCCAATCCAA AATCCACAAAGTCAACCTCTCCAAGGCCATCAAAACCACCCTCCAGAACCTCCTTTCAGCCTTCAAATCACTCATTCATC TCATAAACTCAAGCCTTCACCGCACCCTCGCTGCTACTAGAACATATTCTACTTATCATCACTATCATGTTCAAAGCAAG AACATATCAGCAATACACATAGATGACCTCTTTGCTGAGAAGGGTACTCATCATCATCATCATCATCATTCACAAGGGGA AACAAGCAGAGAAGTGAATCATGGTGAGAGCAGTGGCTTGAATAGTATTGAGGATGCATGGAAGGCTGTGGTTGCTAGGT CTCCACATCTGCAAGTGGATCAGAGGGCAGAGGAATTCATCTCCAAGTTTCATGAAGACATGAGGCTTCAGAAAGAGAGG TCCATGATTGAATTTCAGGAGATGCTAGCAAGGAGTGCCTAA
Protein sequence (LotjaGi6g1v0005300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRLKLAKKLQPAKKAWKCFSNKLQSKIHKVNLSKAIKTTLQNLLSAFKSLIHLINSSLHRTLAATRTYSTYHHYHVQSK NISAIHIDDLFAEKGTHHHHHHHSQGETSREVNHGESSGLNSIEDAWKAVVARSPHLQVDQRAEEFISKFHEDMRLQKER SMIEFQEMLARSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 172 | 172 | 1.8E-61 | – | |
| PANTHER | 1 | 172 | 172 | 1.8E-61 | – | |
| MobiDBLite | 95 | 119 | 25 | - | – | |
| Pfam | 138 | 171 | 34 | 3.8E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0005300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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