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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0022900 |
| Transcript ID | LotjaGi6g1v0022900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein, putative; TAIR: AT3G07810.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1; TrEMBL-Plants: tr|A0A0B2SI74|A0A0B2SI74_GLYSO DAZ-associated protein 1; Found in the gene: LotjaGi6g1v0022900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:4305832..4309908) extracted from Lotus japonicus Gifu genome v1.2.
TTCTCTAAAAAGGGTATAATAGCAAGAAGGAAAAAGATTTTGATATTCTTCCATTTTCGGTCTCTATATATATTACTAAA ACTAAAACCATTGCAATTGTATCTTTCCTACCGATTTGGTAAAAGAATTTACGTTTGAAATATCAAATATTAATTCAATA GGAAGACGATGAACCTAACAGTATCGTGTTCTTAGTCTTATTGTGCCTCCCCTTAGATCATAGTTTCCTGTAAGATTTGG CAACTGGTTTGAAAGTTTTGATCTTTGTTTAATTCGGTGTCCCTTTTGATCTTTGATGAATTTTCTTATTGATTAACAAT TCATATTTTATTTTTTTCAGGATTTCTTGATTGCTAGTTTGAGGGTCCAAATTCTAAGGTATTTGTTCTGTTACTTCATC TGATGTAATACTATGCTTTACCAAGAAGGTTTTGTGTTAGTAGTAAGAAAGCTAGACTCCAGTGAGAATGAAGACACAAG TTTGAATCCTGGGAAATCTCAGAGAGATTGCCACAGTTTTCCAAATGGGATTAGTCTTGTTCTCAAAGAACGCGGGCCCG TGAAAGACTAAAAATATAAAACTAGACTATGCTTTTAAGTTTATATATTGTTTTTTATGGGTCTTTTTTATAATTATGCT ATAGGATTGTGCAATGAATTTTGTACAGGCCATGAAGCTAATTTCCATTACTCATGTAGTACTGAAGCTTTAGAGCTTTC ACTCTCATATATTGCCAATCATTTTCAATTTTTGTTTAAAACAAAATTTAAAATAGAAATAAACAACTATACAACCAAAC TACTCTAGCAGTGAAAGAAAATTCCTCGGCCATCAACCTGTCATTTGCTTTGTTCTACAACTTTTAGGTGCTTGGTTTGT CCTAGGAAGCTTGGCACTTTTCAGTTCTGAAGATGCTGCCACTTGCATTTGTGAGTTTTTGAGCTTAATGGATTAAGTAT TTTCTGCTTATAGATAAATGGAAGCAGATAATTGCAAAATATTTATTGGTGGAATATCATGGGATACAAATCAAAGGCGA CTCAGGCAATATTTTAGTGCTTATGGGAAAGTCATGGAATCAGTGATCATAAAGGATCGGACAACACGTAGAGCCCGTGG ATTTGGCTTTGTTGCCTTTTCAGACCCAGCTGTTGCTGAAGAAGTGTTGAAAAAGAAGCACAAGATTGATGGAAAGATGG TAATTTCTTGTTGTATTCCTCTTTAAGTTTCAAGTCTTGTTCTTACATTTGATTTACTGCTTGTTTGAATCAACTTATTT TTTCTCGGAATCAATTCGGGCACCCAGAAGCTACTCACATAATCTTTTCCCCAAAATTGTTTTTAGCTTTAGAATCAATT GTATAATGGTTTCTGAGCATGGTATTACTTGAAGTCACAATACTTCATTCCATATCAGCAATTCAAGATTTTGAATTGTG GTTCAAATTGCTGAATTCAGGGTCAGCATAGTGCATCTATTTAGCTAGACTTAGATTGGAGATAGAGTAAAAAACTTTTC TCTACATGTTATATTCTCTAATGTTATTTCTGTTTTCTTTAATTGTTATTTCCTGCTACATATATACACCTGAAGGAAGG ATTGATAAATCTTAATATCATATTTGATTTTCTTAATCCGATTTCTGTTTAATACAATTCATCTTTCTTTAGGTCGATGT TAAGAAAGCTGCACCTAAGAATGGTTCTCCAGGTCCATACCGCTCGACAAAGATATTTGTTGGAGGTTTAGCATCAACAG TTACAGAGAGTGATTTCAAAAAGTACTTTGATCAATTTGGGACGATAAAAGATCTGGTTGTGATGTGTGACCCCAACACT CAGAGGCCAAGAGGGTTTGGATTTATCACTTATGATTCTGAGGAAGCTGTTGACTCAGTCTTTCTCAGGAGTTTCCATGA ATTGAATGGAAAAATGGTTGAGGTCAAGCGCGCAGTTCCTAAGGAGCTATCACCAGGACCAAACCACAGCCCACTTAGTG TATATAACTATGATCTCAGCGGAGTCAATAGCTTCATAAATGGCTTCACTCAAGGATATTGTCCTAGTAATGTTGGAGGG TACGGACTTTGCGTTGATGGTACAGTTAGTCCTATTGCTAGAGGTCGAATTGGATTTCCTCTATTCGGTTCTGGTTATGG AATGAGTCCAAATTTTGAGCCTGTTTTGAACCATGAATTCCGGGGAAATGAAAATTTCTATAGTGATCTTAGCGTAAGCC GAGGATTAAATCCTGACTATTTTGACAGTTCAAAGAGATTTGCAAGTTCTATTGGATATGATGGTGGTAATGGCAGAAGC AATTCTTTCTTCAGCTCTGGGACTCAAAATTTGTATGGGAGTGGTGGCCTAAGTTATGGAACAAGTTCTGCCAATTCCAC TGCATACATTGGATTAGGGGGTGGGACAGTTAGAGGAAACACAATTAGCAACACTGGAGTTGGTGTATCACTATCACTCA GTAATGGCAACCTCGGCTTTAGAGGTGAAAACAACAATAGTGGTTTGGGGATTGGAGGGTATCGAAGAAGCAGTGATGCT GATATACCCCTAACATCATCTTACTCTGCGCCAAATGGTGGTTTTGATGGACCTTTTTCTGAATTTTACAGTAGCAGTTC AGTTAATGATGACCCCATTTATCGGTCTTCGAATTTTGAGCCAGATGGATTTGATCCCTTTGGTTATGGACTTGGCGTCG TAGCTTCAGATGTTTCTGCCAAATGTTCTCCAGGTTATGTTGGAAGTTATACAGTCAACAAGAGGCAGCCAAATAAGGGT AAGAACAAACTCTGTCATATTTCATCCCAAATTTTTTGTTAGTTTCATCTGTTCCCCATTGAACTTTTGATTGACTTTGC TGTGTATAAGTAGGAGCAGTATAAGTGCAACTATATACTTGAAATAAAAGGATGGGATTACTTGACATGATTCTCTCTAA CAATCATATGCATGACTAATGAGTAGATATTAGATCCCTACTTAATTGATTAGATCTTAGATCCCTAGTTAGTTGATCTT TGATGAATACATTTACACTGTAGCATTCTTTTAATACAGTTTAAAGAGTTTAAATGCTTACTCAAGTGTTTGAGAGAGCT TATGTAAGTAGCTTATGACGTACTTATAAGTTGTTTTGACCTTACTTTAATATGTTGCTTACATTAGCTTATGAATAAGC GCTTATAAGTTGTTTTGACCTACGTATAACTTAGTTTGAGCTTATTTCTATAAGCTTCTCAATAAACTGGTTTTTTCAAG AATGTCCATGACATACTTCTTCCATGAAATCACAGTACTATCCTTGGATTATGTCACCTCTGTTCCCAAGTAGTAATGAA GTTTGCCAAGATATTTGGTTTAGAACTGATGACAAGGATTTTTCAATTTTTGTTAGTGTATAGTTAAATGTTGTTTTAGG TATAATTTACTAGTATTATATCTGTTGTATGTTCCTTTGTAAATCTTCTTATTATACAGAAATAATGAACATAGAAGTAA ATTTGAGACTGATGCAATTTACTTGAAATATGTTGATTGATTATTCAATAATTTTTTTGAGTACAAACTTAACTCTTTGG TCTGCCAAGGCTGACAAACTTCTATCTTTGCATCAGGAATTGCTACATAGGATGATCAATTTGAAGACTGAAACTTACAG GTGAAGATAATCCAGTGACACAAGTGAATTATGAAAGTTGCACACCATTGTTACCGAATTTCTGTAAAGACATTGATAAG AAGTTTTGTTATCTAAAGCTAACTAGACTTATTGTTTTTGAGGATTCAGATATAGAGATTTAGAGGCTTCCAGGGAAGTT GAGATTTGAGTTAGGTTTTGGTTTTTGAGATTTTTGTGGGACGTAAAATCTGATAGATTTAGGGTTTTTGGTTAGGTTCC TTTAAATCTTAGAATTAAAATTGAGTCAATTTAAATTATTATTCTTGAACAAGGGAAACGATGAATTATGAGTTCTTAGA GCATTTCCATCTCTAACTTTTAACTTTTGTGATTGCTATGATACATGAGATGATGTGTACCAATCAAATAAATCCAG
CDS sequence (LotjaGi6g1v0022900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCAGATAATTGCAAAATATTTATTGGTGGAATATCATGGGATACAAATCAAAGGCGACTCAGGCAATATTTTAG TGCTTATGGGAAAGTCATGGAATCAGTGATCATAAAGGATCGGACAACACGTAGAGCCCGTGGATTTGGCTTTGTTGCCT TTTCAGACCCAGCTGTTGCTGAAGAAGTGTTGAAAAAGAAGCACAAGATTGATGGAAAGATGGTCGATGTTAAGAAAGCT GCACCTAAGAATGGTTCTCCAGGTCCATACCGCTCGACAAAGATATTTGTTGGAGGTTTAGCATCAACAGTTACAGAGAG TGATTTCAAAAAGTACTTTGATCAATTTGGGACGATAAAAGATCTGGTTGTGATGTGTGACCCCAACACTCAGAGGCCAA GAGGGTTTGGATTTATCACTTATGATTCTGAGGAAGCTGTTGACTCAGTCTTTCTCAGGAGTTTCCATGAATTGAATGGA AAAATGGTTGAGGTCAAGCGCGCAGTTCCTAAGGAGCTATCACCAGGACCAAACCACAGCCCACTTAGTGTATATAACTA TGATCTCAGCGGAGTCAATAGCTTCATAAATGGCTTCACTCAAGGATATTGTCCTAGTAATGTTGGAGGGTACGGACTTT GCGTTGATGGTACAGTTAGTCCTATTGCTAGAGGTCGAATTGGATTTCCTCTATTCGGTTCTGGTTATGGAATGAGTCCA AATTTTGAGCCTGTTTTGAACCATGAATTCCGGGGAAATGAAAATTTCTATAGTGATCTTAGCGTAAGCCGAGGATTAAA TCCTGACTATTTTGACAGTTCAAAGAGATTTGCAAGTTCTATTGGATATGATGGTGGTAATGGCAGAAGCAATTCTTTCT TCAGCTCTGGGACTCAAAATTTGTATGGGAGTGGTGGCCTAAGTTATGGAACAAGTTCTGCCAATTCCACTGCATACATT GGATTAGGGGGTGGGACAGTTAGAGGAAACACAATTAGCAACACTGGAGTTGGTGTATCACTATCACTCAGTAATGGCAA CCTCGGCTTTAGAGGTGAAAACAACAATAGTGGTTTGGGGATTGGAGGGTATCGAAGAAGCAGTGATGCTGATATACCCC TAACATCATCTTACTCTGCGCCAAATGGTGGTTTTGATGGACCTTTTTCTGAATTTTACAGTAGCAGTTCAGTTAATGAT GACCCCATTTATCGGTCTTCGAATTTTGAGCCAGATGGATTTGATCCCTTTGGTTATGGACTTGGCGTCGTAGCTTCAGA TGTTTCTGCCAAATGTTCTCCAGGTTATGTTGGAAGTTATACAGTCAACAAGAGGCAGCCAAATAAGGGAATTGCTACAT AG
Protein sequence (LotjaGi6g1v0022900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKKHKIDGKMVDVKKA APKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNG KMVEVKRAVPKELSPGPNHSPLSVYNYDLSGVNSFINGFTQGYCPSNVGGYGLCVDGTVSPIARGRIGFPLFGSGYGMSP NFEPVLNHEFRGNENFYSDLSVSRGLNPDYFDSSKRFASSIGYDGGNGRSNSFFSSGTQNLYGSGGLSYGTSSANSTAYI GLGGGTVRGNTISNTGVGVSLSLSNGNLGFRGENNNSGLGIGGYRRSSDADIPLTSSYSAPNGGFDGPFSEFYSSSSVND DPIYRSSNFEPDGFDPFGYGLGVVASDVSAKCSPGYVGSYTVNKRQPNKGIAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 3 | 88 | 86 | 4.57E-23 | ||
| Gene3D | 3 | 85 | 83 | 3.7E-24 | ||
| ProSiteProfiles | 6 | 82 | 77 | 17.097 | ||
| SMART | 7 | 78 | 72 | 3.6E-21 | ||
| Pfam | 8 | 69 | 62 | 3.0E-14 | ||
| PANTHER | 11 | 275 | 265 | 1.4E-121 | – | |
| PANTHER | 11 | 275 | 265 | 1.4E-121 | – | |
| Gene3D | 90 | 168 | 79 | 1.4E-23 | ||
| SUPERFAMILY | 91 | 314 | 224 | 6.72E-25 | ||
| ProSiteProfiles | 93 | 170 | 78 | 16.483 | ||
| SMART | 94 | 166 | 73 | 4.6E-22 | ||
| Pfam | 95 | 149 | 55 | 6.3E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0022900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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