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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0058900 |
| Transcript ID | LotjaGi6g1v0058900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | C2 domain-containing protein; TAIR: AT3G17980.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|Q9LVH4|CAR4_ARATH Protein C2-DOMAIN ABA-RELATED 4; TrEMBL-Plants: tr|A0A151U9Q5|A0A151U9Q5_CAJCA Putative ADP-ribosylation factor GTPase-activating protein AGD13; Found in the gene: LotjaGi6g1v0058900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:10754026..10757225) extracted from Lotus japonicus Gifu genome v1.2.
ATATGAATTTGTTAAAAAACATTGTTTGCAAGAGTGGTATGAAAAGGACAAGTACAGTATAATAAGTTTAGGAATCCACT TGGTTGTTTCAATAAAGAAGGAAGAACAAGTCCAAAAAAAAGCACAAGTCATAGAGAAGGACTTGATAGATTATAAATGC TTCTTCATCCATCTTGTGCTTAGAGTCAAGAGTCAAAAACCACCATTGAATTAGTTTATCTTGAAAGTTAATCCATTGAG TTGTGAATTTTGCTTAAGTTTGTCCATGGAGAACTTGTTGGGTCTGCTCAGAGTTCATGTGGAAAGAGGGATCAGTCTTG CTGTGAGGGATGTTGTGAGCAGCGACCCTTATGTTGTCATCAAGTTGGGTCACCAGGTCTTGTAATCTTTCTTTTGTTTC CTCAATTGGGTTGATTTTGCTTCCTTCTTTGACAATACGCTGTACCTTGTTGACTCTGTTTCTTTGTTAATCTTTCTTTT GATCTTCTTTCTCTAATATCACTTTAATTTTATGTTATGTGTCCCTTCTCTGATTCTGATGCATGTTCTCCTTGTTTCAA TTTCATGTCATGATTGTCATCTCAACATGCATAGATGGTTCTAAAACTTGGTTTAAGCTGCTCTCATCCACTGTGGGGCC AGGCCAGCTGTTTGATAGTTAAGCAAATTTTTTTGGGGGGTATCAATAAAGTTATAAAACTATATAAATAATTGAGGATA ATTTGTTTGTCCCAAACTAGCTTTTTAGTGATTATTTATTTTTATTAGAACTAGACTATGCACTGAGTACTGCAACTCAT CCTAGTTACTAAAAGATAGGCTGAAATTTGAGGGGCAATTGAGTTTGTGTACGGAAACTCAGTGATTTAACACATTTGAG GAGAAGTGATTTTGGAAAAAGATAAAAAGAGTAAATTTTGTGGGTGTAGAAGTGAGTTTGGGAGGAATAGAAGTGGATCC AAATATGATGTTAGCATATATTGTAGCTGTATAGTCTATGGTTTGAATGGACCATAAAATCAACTGTATTTTGTTCCAAA ATTTTGGATATTTGTGTTAGCCGATGTTAAATTGTAGAGGGGTGAGTTAACAAACATTGTGCATTGCTCGTTCTCTGAAC ATCAAACTCATTACTGCATTTATGTCTCATGCAGAAGCTGAAGACTCGGGTAGTGAAGAAGAATCTAAATCCTGAGTGGA ATGATGATTTGACTTTATCCATTGTAGATCATCGTGACACAATCAAACTAGTAAGTAACTTTTCTTGTAACAGTGTGTTT TTCAGAGCAAAAGTTGGGTTAATTAAAACATGAAAGTTGCATTAGCTACCTGTATGCATATCAGTGTTATCAGGTGACTG ATGACAGTAGTCAATATGAGATTTTTCAATGTCGCAGAAACTTGATCTGAATATGACAGAACACCAAAACCATACAAACA TTATCTTAGAATCAAAATGTTAAATTTTTGGGATTCAGAACATCGTCATATGTGGGGCTAGACGGCTAGTTGCTGAAACA CTGGATATCTTTGTTACTTACTGTGCCTATTTTTGGATTAGTTTGGATTTCAGCAGAGCATTCATGCAGCCGAGTATTTT TAGCTGTATGATCTCAATTGCATGATTCACATTTCAACTTGTAATAGTAAAATGCAATAGCAACTTGGAATGTGAGTCAT CCGATCTTAATCAGACTAAAAATATACTTGAATGCGTGAATGCAGTTCCCCTGACCGGAATCCAAATTCTTCAACTTATC TGCACATTGACATTCGATACAGAATTCAACACTGAGCACTAATTTTACTGTCTTGTGATGATGCAGTTTGTGTATGACAA GGACCTATTCAGCTTGGATGACAAAATGGGGGATGCTGAGTTTGAGATTGGTCCATTTATCGAAGTGGTGAAGATGCGGT TGCAAGGTCTCCCTGATGGCACCATAGTTACCAGAGTGCAACCTAGCAGACAAAATTGCTTAGCTGAGGAGAGTCACATT GTGTGGAAGGATGGGAAAGTTGTCCAAAACATGGTTCTGAGACTTAGAAATGTTGAGTCTGGGGAAGTGGTGCTTCAGTT GCGATGGATTGACATTCCTGGTTCAAGGGGTGTCTAGTGTAACTCACACTCACAAGTAAAGATGAGACTTGCAGCCCCTT AAACTAGAAGCACCTTATGCTTTATTTTCTTCAATCCCTCAATCTTTTTTCTTTCTCGCATAACTTGAATAATAGATTTG TTGAAATGTATAAGTTTTTGTTTAGGTTATGTGTATGCTTTAGATAAATACCATTAATACAATACTCTATTTAATATTTC TTTAACATATCGCTTAACTGAAATCCAAGTGGACCTGTCTAAATCAATAGGTCCTCCTCCCAATTTGGTGGTATAAATTG CACTAAGTCTACTCCTACACATCCTTTCAAAAAAAAGTCAAACTCCTACACGTATAAGATAATAAAATATAATAAAACTA AAAGATAGATAAGATATAATAAACTAAAAGAATGATATGAACTTTATTTTGTTGTTGTTAGGAGGGCTAGAGGCCCAAAA AAAACTACAGTAAAGTAGATTCGGGTAAGACATTTTAGTGCAACTAAAGAAAGGAAAATTAGTTTCAAAAGAAGAAAAGA AAAGAAAAGAAATTTCTACATCTAAGAGTTGGTTTCGTTTTAGAAAAAAAAAACCTCCAAATGATGAATGTCAAGCTTCA AATCATGGGCTATTTAGCCAAGTTGTAATCTACCACTTGATTACCCCCCTAGAATATGAATACAACGCATCAACGAATCC TTATCTTGCTAAAGCCGAATTTGGTTAACCATAAAAGCATAAGGGTGAAGATAATCACACCATTTTTTAACCAAATGCAC CACCATCGAAGAATCACTCTCAACAACTCTAAGTAAATATCTCCCCGTAGCCAACTGAATGACCTAGAAGATGTCCCAGA GCTTCGTCGACGAAACATTAGACGCTCAAAAGTTATTGCAAAATCCAATGGCCCATCTATTGGAGGAGAGTCCCGACAAA CACCACCACAACCAACCATATTCACCGCCCCCTAACCAAACCATTGACATTGCACTTGAACCAATAAAACAGAGGAGGCT TCCAATTCAGAAGGATCACTCTATACATAGGAGTGCGACTAAAAGGAGATAAAAGAGATATATGAACTTTAACGAGAGGA
CDS sequence (LotjaGi6g1v0058900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAACTTGTTGGGTCTGCTCAGAGTTCATGTGGAAAGAGGGATCAGTCTTGCTGTGAGGGATGTTGTGAGCAGCGA CCCTTATGTTGTCATCAAGTTGGGTCACCAGAAGCTGAAGACTCGGGTAGTGAAGAAGAATCTAAATCCTGAGTGGAATG ATGATTTGACTTTATCCATTGTAGATCATCGTGACACAATCAAACTATTTGTGTATGACAAGGACCTATTCAGCTTGGAT GACAAAATGGGGGATGCTGAGTTTGAGATTGGTCCATTTATCGAAGTGGTGAAGATGCGGTTGCAAGGTCTCCCTGATGG CACCATAGTTACCAGAGTGCAACCTAGCAGACAAAATTGCTTAGCTGAGGAGAGTCACATTGTGTGGAAGGATGGGAAAG TTGTCCAAAACATGGTTCTGAGACTTAGAAATGTTGAGTCTGGGGAAGTGGTGCTTCAGTTGCGATGGATTGACATTCCT GGTTCAAGGGGTGTCTAG
Protein sequence (LotjaGi6g1v0058900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENLLGLLRVHVERGISLAVRDVVSSDPYVVIKLGHQKLKTRVVKKNLNPEWNDDLTLSIVDHRDTIKLFVYDKDLFSLD DKMGDAEFEIGPFIEVVKMRLQGLPDGTIVTRVQPSRQNCLAEESHIVWKDGKVVQNMVLRLRNVESGEVVLQLRWIDIP GSRGV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 164 | 164 | 3.4E-81 | – | |
| PANTHER | 1 | 164 | 164 | 3.4E-81 | – | |
| SUPERFAMILY | 2 | 91 | 90 | 7.79E-26 | – | |
| Gene3D | 3 | 163 | 161 | 3.8E-24 | ||
| CDD | 5 | 148 | 144 | 2.28239E-75 | – | |
| Pfam | 6 | 92 | 87 | 2.5E-19 | ||
| SMART | 7 | 102 | 96 | 8.3E-15 | ||
| ProSiteProfiles | 8 | 87 | 80 | 13.846 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0058900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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