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LotjaGi6g1v0271400.3

Overview

Field Value
Gene ID LotjaGi6g1v0271400
Transcript ID LotjaGi6g1v0271400.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Arf GTPase activating protein; TAIR: AT4G21160.1 Calcium-dependent ARF-type GTPase activating protein family; Swiss-Prot: sp|Q9FVJ3|AGD12_ARATH ADP-ribosylation factor GTPase-activating protein AGD12; TrEMBL-Plants: tr|A0A151T618|A0A151T618_CAJCA ADP-ribosylation factor GTPase-activating protein AGD12; Found in the gene: LotjaGi6g1v0271400
Working Lj name n.a.

We have encountered a general error: No InterPro domain data available

Sequence information

Genomic sequence (LjG1.1_chr6:58601954..58602998) extracted from Lotus japonicus Gifu genome v1.2.

ATGATTGGCAGGTCTTTTACAGGTAGAAGAAGATTAAAAGATTTATTACTTCAGAGCGATAATCGTTGTTGTGCTGATTG TAACGCTCCAGATCCTAAATGGGCGTAAGTGCTTCATTTTTGCACTCATAATGTTTGTGGCTTATACTATGGCATTATCA TACCTTTTCTTTTTGGTGAACTGTTAGACAAACAGTTCACTTCATAAGTTTAAACTAAACCCAACTCAATTGCAATTGAT TCGGTTATCAAAATTATCTTTTTCAACACAGAACCCAACCTCCAACCCGTTCACATCTGTTGTTTTACTTGCAAATCTAT GCATTTTAGAATTTAGTACTTATAACTCTTTTTTACTCTTGCCATTTTTGCACTCATTTTGGCCTCCTCAACTATTATTA ATTATAACCAAGTGTATTTGACCATGTTTACTATCCAATTTTGTTAATTTTTTTTTATTAAAGTGATTACTGAAGAATAT AAAAATGTAATTTTCAAAAAGATTAAATATTAAATATAATATCAATGTTGTGAAATGATTTAAATCTTGTCTAGAATAAT CAAATGCAAGGAACATTTTTAACATGCAGTACTATAAAATTTGCAATTAATGAAGAGATAATATGAGAGGATAAAAACCG ATAAAATGTAATTATATATTTCTTATCTTCACCCAATGACATACACCAAAAATCAGATTGATATGATATGGGTTGGCTGA AAAAAAAAAAAAAAAACTCATTGAATGTGACTTGTTTCGATTTTTATGATCGGTTTCGATTTTCTTCTATCTTCTCAACC CCGAAAGGAACCAACCATCAACACTCCTTGACGTTCCTTAAGCTTTTGGAAAGTAACTAGATGTAAACTATAATAAAGAA AAGAATGTGACTTGAATATCATTCTTTTAAACTGTGAATTCATTTTGTTAACTGCATTTCAGGTCTGCCAATATTGGAGT TTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGAACTCATATATCAAAGGTAAACAATTCACATTTACCAA TATGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0271400.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATTGGCAGGTCTTTTACAGGTAGAAGAAGATTAAAAGATTTATTACTTCAGAGCGATAATCGTTGTTGTGCTGATTG TAACGCTCCAGATCCTAAATGGGCGTCTGCCAATATTGGAGTTTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCC TTGGAACTCATATATCAAAGGTAAACAATTCACATTTACCAATATGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0271400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIGRSFTGRRRLKDLLLQSDNRCCADCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVNNSHLPI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Unable to find any records for the transcript with the identifer LotjaGi6g1v0271400.3.

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0271400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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