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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0294700 |
| Transcript ID | LotjaGi6g1v0294700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP synthase gamma chain; TAIR: AT4G04640.1 ATPase, F1 complex, gamma subunit protein; Swiss-Prot: sp|P28552|ATPG_PEA ATP synthase gamma chain, chloroplastic; TrEMBL-Plants: tr|A0A0S3S3P5|A0A0S3S3P5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0294700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61267170..61270063) extracted from Lotus japonicus Gifu genome v1.2.
CTGAAATCATCTGCAGTCATAATCGCAACAAGGCATATAGTTAGTATAAATTCTAAAATCTATGTAAATCACAATGTAGT CTAGGCATGTTTTAGGAGCAATTCTCACCTTCACATGAACAAGAAAGAAAAATGCTGGTTTTAGCATCTTCCTGGATTCT AACAACATTTACAAAGTAATTTTACATTTGACATGGACTAGGAAACAATGATAGTAACACAAACAATCTTAACTAAAGTG AAATGTTAGTGTCAGAGAGATGAACTGAGTTAATTGCAGAAGGAATCACTTTCTGAAAGCCGCATATACCATAGAGACCA AGCCACATCAGATTAGAGTTGGACCCACAAGAATTACCTGTAAGGTGCAATCTACTCTCTCCACCAACGGTCAAAATCGT TATCCCAAAACCTCATCCACTTCCTCTCATTCCCTCCACTCATTTCCACTTGCTACTTCCATGGCAATAGAGATTGATTA GAGAATCCCAACCCAACACAACACACTGACATGAGAACAAGATAAGACCTTCCCAATCAAAAAACCACCTCAAAATTAAG CAACCAAAACTCCATTGCAACACCAACAACAACAATGTCTTGCTCCAACCTCACCATGTTGGTGTCTTCCAAGCCTTCTT CTCTATCTGATGCCTCTAACCTCTCCTTCCGTTCTATCCACCTCAACCCTTTTCAGCTCCCTTCACAAAACTCACCCCCT TCACGCATCTCTGTTTCCCCTGTTCAGTGTGGCCTCAGAGAGCTCAGAACCCGTATAGAATCCGTGAAGAACACCCAGAA AATCACAGAGGCAATGAAGCTTGTGGCTGCTGCAAAAGTCAGAAGAGCTCAAGAAGCTGTTGTCAATGGAAGACCCTTCT CAGAGACCCTCGTTGAAGTCCTCTACAGCATCAACGAGCAGCTCCAAACTGAAGATGTCGACGTCCCTCTCACCAAGATC AGACCTGTGAAGAAGGTTGCCCTGGTCGTCTGCACAGGAGATCGTGGACTCTGCGGTGGATTCAACAACTTCATCTTGAA GAAAGCGGAGGCCAGAATCAAAGAGTTGAAGGAACTTGGTCTCGAGTACACCATCATCAGTGTCGGCAAAAAGGGTAACT CTTACTTCATTCGTAGACCTTACATTCCAGTTGATAGATTTCTTGAAGGTGGCACGCTTCCCACTGCCAAAGAGGCTCAA GCTATTGCAGATGATGTTTTCTCACTGTTTGTGAGTGAGGAGGTTGATAAGGTTGAGCTCTTGTACACAAAGTTTGTGTC GTTGGTGAAATCAGACCCTGTGATTCATACTCTGCTTCCTCTGTCACCGAAGGGAGAAATCTGTGACATCAATGGGAACT GTGTGGATGCTGCTGAGGATGAGTTGTTCAGGTTGACAACCAAGGAAGGGAAGTTGACTGTGGAGAGAGATACCATTAGG ACTAAAACTGCAGATTTCTCACCGATTTTGCAGTTTGAGCAGGACCCTGTTCAGATCCTTGATGCTCTGCTTCCTCTGTA TTTGAACAGTCAAGTGTTGAGGGCGTTGCAGGAGTCACTGGCGAGTGAGCTTGCTGCGCGAATGAGCGCGATGAGTAATG CGAGTGATAATGCTAGTGACTTGAAGAAGAGCTTGTCAACTGTGTATAACAGGCAGCGTCAGGCGAAGATCACAGGAGAA ATTCTGGAAATTGTTGCTGGTGCTAATGCTCTTGAATAGAACAGAACAGAACAGAACACTCTTCTTCTCTCTGTCTCATG ATCCATGCTTGGATTTCTTTGTAGGTATTGTTGTTATAATGATGAATACTTTACATTCTACTGTGTTTGTTTAAGACTGT TGTGTAATTTTCACAATCTTTTCCAGATGTGCAAACTTTGTGCGCGAGGAAAACTGCAATTCAATCTAAACGGACTCTGT TTTTGTTCTCTCCTTTTTCTCTCTTCTAAATTATATATATGTAATAATTGATCAATATAGTGATTCAGAGTGTTAGCTCT GTTGATTTGTTCTCACTTGTGCCATAGAAATAGTTAATGATTGTGCTTCTAAAGTGGTGTTTCAGTTCTTATGAATCACA AAATGTTCCATTGCAATGTGGTGTTTTGTGTTAGATACTTCTGTAAATACATGAACAACCAGGGAAACTGACACATATCA TCATAAACATGAACTAAGCATGCATTGATGTATGACGAAAACAATAATCAAAGATTAATCATCTTACATGTAAGATATAG CCTATAGGTAGTAAGTAATAGAAAATATTCTATATAAATGGGTTACTAGCAAAACTGATCTTCCAGGATCCGAGCGAGAT GTTGAGAATGTCCTCACAAAATTAGAGAGAAAATCTCAAAATCTACAAGAGCAATGAGAAAGCAAATGAGTTGTTTGAAT AACATGTAGTGTGACCAAGCCTAATTGCAATGGTTGTCTAATTATTTGCAAAGGTTGTTAATTGTTTGGCCGTCTGTCAA TTAGGTGAAGTTAGTGAAGAAAGGTTGTTAATCAAACTTGAAAGTTGTTAATGGTTGTTAATCACACTCCGAGGTTGCTA ACCATTATACTGCAAAGGTTGTTAATGGTTGTCTAATTAACTGCAAAGGTTGTTAATCAAACCTGAAAGTGCGTCTACAA TGAGGTCTTAAGTGAAGAAAGTGCGTCTACAAACTCAATGTGAAGAGTTTGCATCCTTGCGTATAAGCGAGTCTGAGTCT ATTTCGGATTTTAGCGGTAGAATGATGGTGGTTGTGAACAAAATCAAACCCTATGAAGAAAAGGTGGAAGATATTAGTGT CGTAGAGAAGATTCTTCGCTTTGTTAACCACATAATTGAAGAGTCGAAGAATTTAGGCACATTGACGGTAGATCAATTGG TGAGTTCACTTCAT
CDS sequence (LotjaGi6g1v0294700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTGCTCCAACCTCACCATGTTGGTGTCTTCCAAGCCTTCTTCTCTATCTGATGCCTCTAACCTCTCCTTCCGTTC TATCCACCTCAACCCTTTTCAGCTCCCTTCACAAAACTCACCCCCTTCACGCATCTCTGTTTCCCCTGTTCAGTGTGGCC TCAGAGAGCTCAGAACCCGTATAGAATCCGTGAAGAACACCCAGAAAATCACAGAGGCAATGAAGCTTGTGGCTGCTGCA AAAGTCAGAAGAGCTCAAGAAGCTGTTGTCAATGGAAGACCCTTCTCAGAGACCCTCGTTGAAGTCCTCTACAGCATCAA CGAGCAGCTCCAAACTGAAGATGTCGACGTCCCTCTCACCAAGATCAGACCTGTGAAGAAGGTTGCCCTGGTCGTCTGCA CAGGAGATCGTGGACTCTGCGGTGGATTCAACAACTTCATCTTGAAGAAAGCGGAGGCCAGAATCAAAGAGTTGAAGGAA CTTGGTCTCGAGTACACCATCATCAGTGTCGGCAAAAAGGGTAACTCTTACTTCATTCGTAGACCTTACATTCCAGTTGA TAGATTTCTTGAAGGTGGCACGCTTCCCACTGCCAAAGAGGCTCAAGCTATTGCAGATGATGTTTTCTCACTGTTTGTGA GTGAGGAGGTTGATAAGGTTGAGCTCTTGTACACAAAGTTTGTGTCGTTGGTGAAATCAGACCCTGTGATTCATACTCTG CTTCCTCTGTCACCGAAGGGAGAAATCTGTGACATCAATGGGAACTGTGTGGATGCTGCTGAGGATGAGTTGTTCAGGTT GACAACCAAGGAAGGGAAGTTGACTGTGGAGAGAGATACCATTAGGACTAAAACTGCAGATTTCTCACCGATTTTGCAGT TTGAGCAGGACCCTGTTCAGATCCTTGATGCTCTGCTTCCTCTGTATTTGAACAGTCAAGTGTTGAGGGCGTTGCAGGAG TCACTGGCGAGTGAGCTTGCTGCGCGAATGAGCGCGATGAGTAATGCGAGTGATAATGCTAGTGACTTGAAGAAGAGCTT GTCAACTGTGTATAACAGGCAGCGTCAGGCGAAGATCACAGGAGAAATTCTGGAAATTGTTGCTGGTGCTAATGCTCTTG AATAG
Protein sequence (LotjaGi6g1v0294700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSCSNLTMLVSSKPSSLSDASNLSFRSIHLNPFQLPSQNSPPSRISVSPVQCGLRELRTRIESVKNTQKITEAMKLVAAA KVRRAQEAVVNGRPFSETLVEVLYSINEQLQTEDVDVPLTKIRPVKKVALVVCTGDRGLCGGFNNFILKKAEARIKELKE LGLEYTIISVGKKGNSYFIRRPYIPVDRFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTL LPLSPKGEICDINGNCVDAAEDELFRLTTKEGKLTVERDTIRTKTADFSPILQFEQDPVQILDALLPLYLNSQVLRALQE SLASELAARMSAMSNASDNASDLKKSLSTVYNRQRQAKITGEILEIVAGANALE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 373 | 373 | 2.7E-227 | – | |
| PANTHER | 1 | 373 | 373 | 2.7E-227 | ||
| Hamap | 51 | 373 | 323 | 32.042 | ||
| TIGRFAM | 53 | 373 | 321 | 9.1E-107 | ||
| SUPERFAMILY | 53 | 373 | 321 | 4.84E-83 | ||
| Pfam | 54 | 373 | 320 | 1.5E-89 | ||
| CDD | 54 | 370 | 317 | 8.23775E-117 | ||
| PRINTS | 125 | 144 | 20 | 8.0E-39 | ||
| PRINTS | 218 | 235 | 18 | 8.0E-39 | ||
| PRINTS | 320 | 339 | 20 | 8.0E-39 | ||
| PRINTS | 351 | 372 | 22 | 8.0E-39 | ||
| ProSitePatterns | 359 | 372 | 14 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | ATP synthesis coupled proton transport | The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis. | ||
| Cellular component | Proton-transporting ATP synthase complex, catalytic core F(1) | The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled. | ||
| Molecular function | Proton-transporting ATP synthase activity, rotational mechanism | Enables the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism. |
Expression pattern of LotjaGi6g1v0294700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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