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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0305700 |
| Transcript ID | LotjaGi6g1v0305700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubby-like F-box protein; TAIR: AT2G47900.1 tubby like protein 3; Swiss-Prot: sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6; TrEMBL-Plants: tr|A0A151T741|A0A151T741_CAJCA Tubby-like F-box protein; Found in the gene: LotjaGi6g1v0305700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62295502..62297137) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGCATGATGATTGAATGTGACTGTCATGCTTGTCTTTTTATTGCTGAGTAATCAATGTAATTGTTTTCCTGCACTCT GGCATGACCTAACATGATTGGTGCATATTTTCGCAGCCTGGTCCAAGGGAGAATCTCCTCCAGTGCTTTATAAGCCGCAA CCGGACCACCCAAACATATTATTTGTATCTCAATTTAACTAGTGGTGAGTGTATGATACAACTTTGTGATTAATTTTTCC TAGAAAAACTTTAATTTGTTTGTTTTCTTTCATCCTTTACTTTCCTTTTTGACATCAAGCTTCTAATTGAGCGTGTTCCT TTTTGTTATTGTCTTCTTCAATTCAGCACTATGTGATGATGGAAAGTTCCTTCTCGCTGCACGCAAATGCAGACGTCCCA CCTGCACAGATTATATCATCTCTTTACATGCAGATGATATGTCAAGGGGAAGCAACGCCTATGTTGGGAAACTCAGGTGC ATTGCTAATCAATTTCTGTGATTATTGTTGTTTTATTTTTATCGGCGTGAATACTTATACCTTTTTCTTCCCCCTTTTCA GATCAAATTTTCTGGGAACCAAGTTCACAATCTATGATGGCCAGCCACCTCATGCTGGGGCAAAGATTACAAAAAGTCGC TCGACTAGACTGGTGAATCTAAAACAAGTTTCACCCAAGGTCCCAACAGGAAACTATCCAATAGCTCACATCTCATACGA ATTGAATGTGCTAGGTTCCAGGTAATCTTAAGATAATACAAATTGTAAATATATCATCCTGCATGAAATTAACAACTTGC ATTTATACTGTTAAATGAGAAGGAATCAAGAGGTTTTGGACTGAATCTGTGTGTCTCAACTACACAATGGAATGTATTAT ATATAATAGATGCAATTGATATACAAAATTATTGCTACCCTATTTACAATGATTATGCTACCTAATTATAATGAATACAA GATATCCTACTTATTTACAAGATATCTAACATATACTATAATTGTCAATGCATAAATGTTGTCCTGCATCCATAGTTTTC TTTTGGTGGACAATAATGTTTTGACTTTGAGCAGCCAAAGTGTTTGTTGAATACATTCTAGCTTACTGTGCACTCTTCTT ATATGCCTAATATGCTGTTCTTACCATCTATGTATGGCAAGCAGGGGGCCTAGGCGAATGCATTGTGTCATGGATTCCAT TCCGACCTCTGCAATTGAACCAGGAGGGGTAGCCCCTACACAGACCGAGTTTTCTCTTAACAACGTAGATATGTTCCCCC CATTCCCATTTTTCCGGTCGAAGTCAAGTCGTGCTGAAAACTCTTTATCTGGACCTTTGGCTGATAAAAAAGACGGGACA CTCGTGTTGAAAAACAAGTCTCCCAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTAAACTTTCATGGACGGGTGACAGT TGCCTCGGTGAAAAACTTTCAGCTGGTAGCTTCTGCGGAAAATGGACCTGCTGGACCAGAACATGATAAGATTATCCTAC AATTTGGGAAAATTGGGAAGGATTTGTTTACAATGGATTACCGGTACCCTATCTCAGCATTTCAGGCTTTTGCAATCTGC CTCAGCAGCTTTGATACCAAGATTGCTTGTGAATGA
CDS sequence (LotjaGi6g1v0305700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCATGATGATTGAATGTGACTGTCATGCTTGTCTTTTTATTCCTGGTCCAAGGGAGAATCTCCTCCAGTGCTTTAT AAGCCGCAACCGGACCACCCAAACATATTATTTGTATCTCAATTTAACTAGTGCACTATGTGATGATGGAAAGTTCCTTC TCGCTGCACGCAAATGCAGACGTCCCACCTGCACAGATTATATCATCTCTTTACATGCAGATGATATGTCAAGGGGAAGC AACGCCTATGTTGGGAAACTCAGATCAAATTTTCTGGGAACCAAGTTCACAATCTATGATGGCCAGCCACCTCATGCTGG GGCAAAGATTACAAAAAGTCGCTCGACTAGACTGGTGAATCTAAAACAAGTTTCACCCAAGGTCCCAACAGGAAACTATC CAATAGCTCACATCTCATACGAATTGAATGTGCTAGGTTCCAGGGGGCCTAGGCGAATGCATTGTGTCATGGATTCCATT CCGACCTCTGCAATTGAACCAGGAGGGGTAGCCCCTACACAGACCGAGTTTTCTCTTAACAACGTAGATATGTTCCCCCC ATTCCCATTTTTCCGGTCGAAGTCAAGTCGTGCTGAAAACTCTTTATCTGGACCTTTGGCTGATAAAAAAGACGGGACAC TCGTGTTGAAAAACAAGTCTCCCAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTAAACTTTCATGGACGGGTGACAGTT GCCTCGGTGAAAAACTTTCAGCTGGTAGCTTCTGCGGAAAATGGACCTGCTGGACCAGAACATGATAAGATTATCCTACA ATTTGGGAAAATTGGGAAGGATTTGTTTACAATGGATTACCGGTACCCTATCTCAGCATTTCAGGCTTTTGCAATCTGCC TCAGCAGCTTTGATACCAAGATTGCTTGTGAATGA
Protein sequence (LotjaGi6g1v0305700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGMMIECDCHACLFIPGPRENLLQCFISRNRTTQTYYLYLNLTSALCDDGKFLLAARKCRRPTCTDYIISLHADDMSRGS NAYVGKLRSNFLGTKFTIYDGQPPHAGAKITKSRSTRLVNLKQVSPKVPTGNYPIAHISYELNVLGSRGPRRMHCVMDSI PTSAIEPGGVAPTQTEFSLNNVDMFPPFPFFRSKSSRAENSLSGPLADKKDGTLVLKNKSPRWHEQLQCWCLNFHGRVTV ASVKNFQLVASAENGPAGPEHDKIILQFGKIGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 304 | 301 | 5.1E-99 | ||
| SUPERFAMILY | 9 | 304 | 296 | 4.45E-99 | ||
| Pfam | 16 | 299 | 284 | 2.8E-96 | ||
| PANTHER | 16 | 304 | 289 | 1.5E-163 | – | |
| PANTHER | 16 | 304 | 289 | 1.5E-163 | – | |
| PRINTS | 67 | 83 | 17 | 3.3E-80 | ||
| PRINTS | 83 | 107 | 25 | 3.3E-80 | ||
| PRINTS | 132 | 159 | 28 | 3.3E-80 | ||
| PRINTS | 216 | 233 | 18 | 3.3E-80 | ||
| PRINTS | 234 | 250 | 17 | 3.3E-80 | ||
| ProSitePatterns | 234 | 247 | 14 | - | ||
| PRINTS | 261 | 280 | 20 | 3.3E-80 | ||
| PRINTS | 282 | 304 | 23 | 3.3E-80 | ||
| ProSitePatterns | 289 | 304 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0305700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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