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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0356400 |
Transcript ID | LotjaGi6g1v0356400.1 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Actin; TAIR: AT5G09810.1 actin 7; Swiss-Prot: sp|P0C539|ACT2_ORYSI Actin-2; TrEMBL-Plants: tr|A0A1J7GPF5|A0A1J7GPF5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0356400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66785391..66789487) extracted from Lotus japonicus Gifu genome v1.2.
AAACAAAGACCACTTTTTCCTCGCGAAATTTTCCACAACAAGTCTCATCTATTTCTATCAAACCAAACACGAAGAAAATG GAACCAAAGTTGAAAGTTCATTTGCATTTGAGTTTCATTTCAGTGTCATTTAGCTTCTTTTTGTTGAATATATATAAACC TTTTTTCTTCAACACTCTTCTCTGATACACTTTCCCCCATCTTGCTTCTTCTTCTGCTGCACCATCGAACCGTTCACTCT GCAAATCGCGTGTTCTTCGAAGGTGCGTTCCGATCACCGTTTCCACGATCTGCGTTTTTCATGTGATTTTAGTTCAATTT CTGTGTTTACATGCTTCTGTTCATTCTGGATCCGTTTACTATTGATGTGTTTTCTAGATCGAGTTTTTTCTTACTGTAGT TGCTCTTACTGATCTGGATCTAGTTCGTAGCTGTCAATCTTCTGTGTTTGGATTCCGATTTTTGCTTAATTTTGTTATGA GTTAGTTTTCTGATGCATCGGGTTTTGAATTTCTCGATTTGTTTTCGTGCGATTTCTTGTTGATCCAACTAGAACGAGCT TGTTCTGCTATGAAATTTTCTGATCTTTTGAGTTTGTTGATGCTGTCCATTGCATTTGCGTGAAACTGACTGGATTCATG GATTGGATTACTTGTTCCTTTTCCTGTTTGCAAGAAAATGAACTGGTTAATTGCTTTATTTTTGCATAATTGAGCAGAAA TGTTGTCTGAACTTTTGATCCTTGCACATTTCTTTTCTTTGGTTTTCCCCTAAACAACTTGTTTGCCTTTTTGTTGTAGA GGTTTTAAAAGATGGCCGACGCCGAGGACATTCAACCTCTTGTTGTTGACAATGGAACTGGAATGGTCAAGGTTAGTCAA TATGCTTTATGACTTGATTCCTGCTTATTGTGAGCTATGCAAGAGTGCTTGCAATAAGCTAGTATAAAGGACAGGCTTAT AGTGTCTGATGATGTAATGTATATCTTTTTCCCCATGTTTGCAGGCTGGGTTTGCAGGTGATGATGCTCCTAGGGCTGTG TTCCCCAGTATTATTGGGCGACCTCGTCATACTGGTGTGATGGTTGGGATGGGTCAGAAGGATGCTTATGTGGGTGATGA AGCTCAATCAAAAAGGGGTATACTCACCTTGAAGTATCCTATTGAGCATGGTATAGTCAGCAACTGGGATGATATGGAGA AGATTTGGCATCACACATTTTACAATGAGCTTCGTGTTGCTCCTGAAGAACACCCTGTTCTTCTTACCGAGGCACCCCTC AATCCCAAGGCCAACAGAGAGAAGATGACCCAAATTATGTTCGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCA GGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGGTTTGTATCTGTGGTTGAATTTGGTTTTACTATTTTTTGACT ATGTGACTTCAATTTGATCAGGTCAACTTGATATATGTTTTAATGCTGTAAGTTGGGTAATTTCTGATATGATGAATATA AGGCTGTCTTAGAGATTAGATGCAGCTCTAGTTTGAAACTATGGAACGCTGTTTTAAGTTCTACATAATTGGTTTTATTT ATACCTTTAGACTAGTTGAACTATATGCACTAAGCACGGTTTTACATATATTAGGATTGGATATAGATGCAATTTTACAC TCATTCCTTCTCGCTTAAAATGTTTCCTGGTATGTGTTGTTACTTTGGTACTGAATTGTGGGTTATGTAAATAGGTATTG TGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATCTACGAGGGATATGCCCTTCCTCATGCAATTCTTCGTTTG GACCTTGCTGGCCGTGACTTAACAGAGTACTTAGTGAAAATCCTTACTGAGAGAGGATACTCCTTCAGTACCTCTGCCGA AAAGGAAATTGTCCGTGATGTGAAGGAGAAACTAGCATATGTGGCCCTTGATTTTGAGCAAGAAATGGATACTACTAAGA GTAGTTCTGCAGTCGAGAAGAGCTATGAATTGCCTGATGGACAGGTTATTACAATAGGTGCTGAGAGATTCCGGTGCCCA GAAGTACTCTTCCAGCCTTCTCTAATTGGTATGGAAGCTCCTGGAATCCATGAAACTACATACAACTCCATCATGAAATG CGATGTTGATATCAGGAAGGACCTGTATGGAAATATTGTGCTTAGTGGTGGGTCTACCATGTTTCCTGGAATTGCTGATC GAATGAGCAAGGAAATCAGTGCTCTTGCTCCAAGCAGCATGAAAATCAAGGTGGTTGCCCCTCCTGAGAGGAAGTACAGT GTCTGGATCGGTGGTTCTATCTTGGCATCACTTAGTACCTTTCAACAGGTTTGCGCTCATTCTTTCCTCTGTTTTTTTTT TTTCTTTCCAATTTTGTCCTGATCAGTATGTGGAAGTCATTTGTGCTTTCTTGGTTCACTTGTGCAGATGTGGATCTCTA AGGGTGAATATGATGAATCTGGGCCAGCTATCGTTCACAGGAAGTGCTTCTGAGTTGGGTCAGTTTGAGATGGGTGATGC TCAACTTCTTTGTGCACTCAGTCTTGTGTCATATTTCAGTCAAGTTTGGTTGACTTATTTGATGCTTTGGTTTTCAATAG AGATATCTAGTTTAATGCATGGATTTGTAAGTTGAGTATGTTTTATGTTCCTCCATTAGGTCCTCGGGAGCCAGACTGTT TTATGCAATTGGCGGCATGGTATTGGAACTTCGTAGGTTCTGTTTGGCTTGATTTTCCTTTTATTTGTTTTTCATGCTGG CCATGAATTTAGGTGCCTCAAATTAGGAGGCGTATAAGTTTCAGGATCTTTATCTCCCCAGGCAGGGATTTTTGAGTCAG TTTGTTTATATTTATTGTATGCTTAGTTGGTTTTCATCTTTGCAGTGCACTTTAAGCATATCTTTTTTATTGTTTGATAT GATTAGTCCTTTATTCTGGCGGCAATTTGTTTGGTTGAATGCGCTTATGGGATGTATTTGAGGGATTTTGATGTTAGACA AAAGATGAATGCTAGTCAACACTCTTTTCAACACTCACTCTCATTTGTTGATTGAAATTCATTTGGTACCCCACTAAATT GGAAGTGAGACTCATATTTTTTAGTTAAGTTAATGAGAATTTCAATGAATCAATGAGAATGATGAAAATAAAGTGTTAAG AGTGAGTTTTTGCTAGCAATTTTCTTGATAAAAAGTGAATGAACAAAAAAAATTGGACCTTTTTTTTGGCAAAAAAATTG GACCTCACTTCGGGGGATGTTCAAGGCCAGCCCATGAACAAGGCTGAATATATATGGTTATGGTTATTAAATCTCAATTG GTTGACATGGGCATTTTCCAGAGAACATAGGAAGAACTCAACTCTCATCTCGAGTAGTATTTAACGTATTTCCATTAGCA TACATAAAGCTTAAACATGCATAGTGTTTGTTTTTATTCACCCATTAATTTCAACAAATCTCTTATTAATGGTTTTAGGC CTAAATTTATATCAGGTTTTACATGATAAGAAAAACAAAGAGAAGAGAGATAGTTGCACTTCTTTAAGCATTTAGTTCAT GGTTTGACGTGATATGTATGAAGAATGATTTGTATGAACAGACTTATCCACTTAATGTAATTTGAGTTATGAGGGAATTA ATCTCATGATTGTTGGTAATGCAAGAATCATGAGATTAATTATGGAAGGGCGTTGTGGAGATAGTTTGAGGGAAAAAAGT TGCTTCAGAGAACATTACTGATATTCTGTTCGAACTTAAATCTAAGGGGCAAGTTGTTTCATCTATACCGTCCCTTGCAA TCTAACACTTTTGAGCTATTGATTTCTTTTTCTGCATAATATAAGCTTATAGGGTGTCCGTATATATAATTTTTCCCCTT ATGCTAATAGAGTGTCATGAATTAAAGATCATAAACATATCAATAATGTTTATAAGGGTGAGATGACGAGTATTTTTGGA CTTTTTCTTCAATTTTGTTGTAGCGTATCTTAATCAAGTATTATCTGGCCATTTTATTTTTCCTAGTATCTGCGTGGAAG TGGGGTGAGTCACATCA
CDS sequence (LotjaGi6g1v0356400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGACGCCGAGGACATTCAACCTCTTGTTGTTGACAATGGAACTGGAATGGTCAAGGCTGGGTTTGCAGGTGATGA TGCTCCTAGGGCTGTGTTCCCCAGTATTATTGGGCGACCTCGTCATACTGGTGTGATGGTTGGGATGGGTCAGAAGGATG CTTATGTGGGTGATGAAGCTCAATCAAAAAGGGGTATACTCACCTTGAAGTATCCTATTGAGCATGGTATAGTCAGCAAC TGGGATGATATGGAGAAGATTTGGCATCACACATTTTACAATGAGCTTCGTGTTGCTCCTGAAGAACACCCTGTTCTTCT TACCGAGGCACCCCTCAATCCCAAGGCCAACAGAGAGAAGATGACCCAAATTATGTTCGAGACTTTCAATGTGCCTGCCA TGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGGTATTGTGCTTGATTCTGGTGATGGT GTGAGCCACACGGTGCCCATCTACGAGGGATATGCCCTTCCTCATGCAATTCTTCGTTTGGACCTTGCTGGCCGTGACTT AACAGAGTACTTAGTGAAAATCCTTACTGAGAGAGGATACTCCTTCAGTACCTCTGCCGAAAAGGAAATTGTCCGTGATG TGAAGGAGAAACTAGCATATGTGGCCCTTGATTTTGAGCAAGAAATGGATACTACTAAGAGTAGTTCTGCAGTCGAGAAG AGCTATGAATTGCCTGATGGACAGGTTATTACAATAGGTGCTGAGAGATTCCGGTGCCCAGAAGTACTCTTCCAGCCTTC TCTAATTGGTATGGAAGCTCCTGGAATCCATGAAACTACATACAACTCCATCATGAAATGCGATGTTGATATCAGGAAGG ACCTGTATGGAAATATTGTGCTTAGTGGTGGGTCTACCATGTTTCCTGGAATTGCTGATCGAATGAGCAAGGAAATCAGT GCTCTTGCTCCAAGCAGCATGAAAATCAAGGTGGTTGCCCCTCCTGAGAGGAAGTACAGTGTCTGGATCGGTGGTTCTAT CTTGGCATCACTTAGTACCTTTCAACAGATGTGGATCTCTAAGGGTGAATATGATGAATCTGGGCCAGCTATCGTTCACA GGAAGTGCTTCTGA
Protein sequence (LotjaGi6g1v0356400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSN WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDG VSHTVPIYEGYALPHAILRLDLAGRDLTEYLVKILTERGYSFSTSAEKEIVRDVKEKLAYVALDFEQEMDTTKSSSAVEK SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIS ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 4 | 375 | 372 | 4.4E-265 | – | |
PANTHER | 4 | 375 | 372 | 4.4E-265 | ||
Pfam | 5 | 377 | 373 | 2.9E-148 | ||
SUPERFAMILY | 6 | 155 | 150 | 3.89E-66 | ||
SMART | 7 | 377 | 371 | 1.3E-237 | ||
CDD | 10 | 183 | 174 | 1.07065E-18 | – | |
Gene3D | 10 | 373 | 364 | 3.1E-188 | – | |
PRINTS | 28 | 37 | 10 | 3.2E-56 | ||
PRINTS | 51 | 62 | 12 | 3.2E-56 | ||
ProSitePatterns | 55 | 65 | 11 | - | ||
PRINTS | 63 | 85 | 23 | 3.2E-56 | ||
ProSitePatterns | 106 | 118 | 13 | - | ||
PRINTS | 117 | 130 | 14 | 3.2E-56 | ||
Gene3D | 140 | 340 | 201 | 3.1E-188 | – | |
PRINTS | 142 | 161 | 20 | 3.2E-56 | ||
SUPERFAMILY | 149 | 377 | 229 | 2.19E-97 | ||
Gene3D | 182 | 274 | 93 | 3.1E-188 | – | |
PRINTS | 238 | 254 | 17 | 3.2E-56 | ||
ProSitePatterns | 358 | 366 | 9 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0356400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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