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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011009
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 3629 results. Now displaying 3 of 73 with 50 rows per page. This search has taken 5.763s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0092609.2
n.a. PREDICTED: cyclin-dependent kinase F-4-like [Glycine max] gi|356496445|ref|XP_003517078.1| chr0 38620295 38626809 -
2 domain predictions
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Lj0g3v0092609.3
n.a. PREDICTED: cyclin-dependent kinase F-4-like [Glycine max] gi|356496445|ref|XP_003517078.1| chr0 38620295 38626809 -
2 domain predictions
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Lj0g3v0093489.1
n.a. PREDICTED: CBL-interacting protein kinase 2-like isoform 2 [Glycine max] gi|356540040|ref|XP_003538499.1| chr0 39162657 39164567 -
2 domain predictions
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Lj0g3v0093489.2
n.a. PREDICTED: CBL-interacting protein kinase 2-like isoform 1 [Glycine max] gi|356540038|ref|XP_003538498.1| chr0 39162657 39166006 -
2 domain predictions
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Lj0g3v0094019.1
n.a. PREDICTED: receptor-like serine/threonine-protein kinase SD1-8-like [Glycine max] gi|356514951|ref|XP_003526165.1| chr0 39475657 39477039 -
2 domain predictions
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Lj0g3v0094379.1
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At1g50610-like [Cicer arietinum] gi|502089636|ref|XP_004488972.1| chr0 39687402 39688169 +
2 domain predictions
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Lj0g3v0094389.1
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At1g50610-like [Cicer arietinum] gi|502089636|ref|XP_004488972.1| chr0 39688550 39691233 +
2 domain predictions
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Lj0g3v0095039.1
n.a. PREDICTED: PTI1-like tyrosine-protein kinase At3g15890-like [Glycine max] gi|356529320|ref|XP_003533243.1| chr0 40015742 40017467 +
2 domain predictions
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Lj0g3v0095039.2
n.a. PREDICTED: PTI1-like tyrosine-protein kinase At3g15890-like [Glycine max] gi|356529320|ref|XP_003533243.1| chr0 40015742 40017467 +
2 domain predictions
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Lj0g3v0096479.1
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|358347873|ref|XP_003637975.1| chr0 40687117 40695302 +
2 domain predictions
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Lj0g3v0096879.1
n.a. PREDICTED: casein kinase I isoform delta-like [Brachypodium distachyon] gi|357136122|ref|XP_003569655.1| chr0 40890960 40892300 +
2 domain predictions
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Lj0g3v0096889.1
n.a. Casein kinase I isoform delta-like protein [Medicago truncatula] gi|357454571|ref|XP_003597566.1| chr0 40892247 40894840 +
2 domain predictions
 –
Lj0g3v0098029.1
n.a. PREDICTED: probable receptor-like protein kinase At1g67000-like [Cicer arietinum] gi|502124158|ref|XP_004498410.1| chr0 41498065 41498634 -
2 domain predictions
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Lj0g3v0098069.1
n.a. PREDICTED: probable L-type lectin-domain containing receptor kinase S.7-like [Cicer arietinum] gi|502100211|ref|XP_004491661.1| chr0 41512456 41512887 -
2 domain predictions
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Lj0g3v0100719.1
n.a. PREDICTED: serine/threonine-protein kinase CBK1-like [Glycine max] gi|356564186|ref|XP_003550337.1| chr0 42602311 42609396 +
2 domain predictions
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Lj0g3v0100719.2
n.a. PREDICTED: serine/threonine-protein kinase CBK1-like [Glycine max] gi|356564186|ref|XP_003550337.1| chr0 42602317 42608949 +
2 domain predictions
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Lj0g3v0100779.1
n.a. PREDICTED: U-box domain-containing protein 33-like [Glycine max] gi|356522608|ref|XP_003529938.1| chr0 42633753 42636749 -
2 domain predictions
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Lj0g3v0100779.2
n.a. PREDICTED: U-box domain-containing protein 33-like [Glycine max] gi|356522608|ref|XP_003529938.1| chr0 42633753 42636749 -
2 domain predictions
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Lj0g3v0104289.1
n.a. leucine-rich repeat receptor-like kinase [Lotus japonicus] gi|353677868|dbj|BAL04590.1| chr0 44586357 44587111 +
2 domain predictions
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Lj0g3v0106309.1
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|357443189|ref|XP_003591872.1| chr0 45701219 45702496 +
2 domain predictions
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Lj0g3v0106439.3
n.a. PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770-like [Glycine max] gi|356523826|ref|XP_003530535.1| chr0 45775767 45777138 -
2 domain predictions
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Lj0g3v0107369.1
n.a. PREDICTED: serine/threonine-protein kinase OXI1-like [Glycine max] gi|356503073|ref|XP_003520336.1| chr0 46318962 46321031 +
2 domain predictions
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Lj0g3v0107959.1
n.a. PREDICTED: probable serine/threonine-protein kinase At4g35230-like [Glycine max] gi|356511538|ref|XP_003524482.1| chr0 46596198 46602084 -
2 domain predictions
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Lj0g3v0108699.1
n.a. OBP3-responsive gene 1 isoform 2 [Theobroma cacao] gi|508776260|gb|EOY23516.1| chr0 47016971 47023538 +
2 domain predictions
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Lj0g3v0108699.2
n.a. OBP3-responsive gene 1 [Arabidopsis lyrata subsp]. lyrata] gi|297792717|ref|XP_002864243.1| chr0 47016971 47020055 +
2 domain predictions
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Lj0g3v0108699.4
n.a. OBP3-responsive gene 1 isoform 2 [Theobroma cacao] gi|508776260|gb|EOY23516.1| chr0 47017964 47023538 +
2 domain predictions
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Lj0g3v0108759.1
n.a. Kinase-like protein [Medicago truncatula] gi|357521441|ref|XP_003631009.1| chr0 47065607 47067858 +
2 domain predictions
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Lj0g3v0108769.1
n.a. PREDICTED: probable receptor protein kinase TMK1-like [Cicer arietinum] gi|502138204|ref|XP_004503323.1| chr0 47068665 47069207 +
2 domain predictions
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Lj0g3v0110369.1
n.a. PREDICTED: receptor like protein kinase S.2-like [Glycine max] gi|356527258|ref|XP_003532229.1| chr0 47861972 47862370 +
2 domain predictions
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Lj0g3v0110529.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430-like [Glycine max] gi|356540452|ref|XP_003538703.1| chr0 47947649 47948986 -
2 domain predictions
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Lj0g3v0110529.2
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430-like [Glycine max] gi|356540452|ref|XP_003538703.1| chr0 47948300 47948966 -
2 domain predictions
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Lj0g3v0112879.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max] gi|356530645|ref|XP_003533891.1| chr0 49267932 49271244 +
2 domain predictions
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Lj0g3v0112879.2
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like isoform X1 [Cicer arietinum] gi|502166659|ref|XP_004513949.1| chr0 49268904 49272257 +
2 domain predictions
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Lj0g3v0113159.1
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 29-like [Glycine max] gi|356575757|ref|XP_003556003.1| chr0 49397392 49401058 -
2 domain predictions
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Lj0g3v0113169.1
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 25-like [Glycine max] gi|356575773|ref|XP_003556011.1| chr0 49402115 49406125 -
2 domain predictions
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Lj0g3v0115159.1
n.a. PREDICTED: probable receptor-like protein kinase At4g39110-like [Glycine max] gi|356542359|ref|XP_003539634.1| chr0 50578610 50582102 -
2 domain predictions
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Lj0g3v0115489.1
n.a. Serine/threonine protein kinase [Medicago truncatula] gi|357477799|ref|XP_003609185.1| chr0 50766771 50772245 -
2 domain predictions
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Lj0g3v0115709.1
n.a. PREDICTED: probable inactive receptor kinase At5g58300-like [Glycine max] gi|356537708|ref|XP_003537367.1| chr0 50859370 50863385 +
2 domain predictions
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Lj0g3v0116419.1
n.a. PREDICTED: proline-rich receptor-like protein kinase PERK4-like isoform X3 [Cicer arietinum] gi|502153183|ref|XP_004509247.1| chr0 51221672 51225411 +
2 domain predictions
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Lj0g3v0120919.1
n.a. Ser/Thr protein kinase [Lotus japonicus] gi|62857022|dbj|BAD95896.1| chr0 53812434 53814712 -
2 domain predictions
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Lj0g3v0122779.1
n.a. PREDICTED: TP53-regulating kinase-like isoform X1 [Cicer arietinum] gi|502129523|ref|XP_004500333.1| chr0 54895363 54896700 +
2 domain predictions
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Lj0g3v0123129.1
n.a. Kinase superfamily protein isoform 1 [Theobroma cacao] gi|508774145|gb|EOY21401.1| chr0 55170807 55188124 +
2 domain predictions
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Lj0g3v0124999.1
n.a. PREDICTED: probable receptor-like protein kinase At1g49730-like [Glycine max] gi|356499893|ref|XP_003518770.1| chr0 56116981 56119341 -
2 domain predictions
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Lj0g3v0126599.1
n.a. PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Cucumis sativus] gi|449529503|ref|XP_004171739.1| chr0 56959909 56960411 -
2 domain predictions
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Lj0g3v0126779.1
n.a. PREDICTED: probable serine/threonine-protein kinase At1g09600-like [Cicer arietinum] gi|502084528|ref|XP_004487708.1| chr0 57096894 57103705 -
2 domain predictions
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Lj0g3v0126939.1
n.a. protein kinase [Glycine max] gi|351726644|ref|NP_001235086.1| chr0 57196155 57198494 +
2 domain predictions
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Lj0g3v0129129.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max] gi|356514945|ref|XP_003526162.1| chr0 58411938 58415932 -
2 domain predictions
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Lj0g3v0130729.1
n.a. Kinase-like protein [Medicago truncatula] gi|357514031|ref|XP_003627304.1| chr0 59357554 59358737 -
2 domain predictions
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Lj0g3v0130739.1
n.a. Kinase-like protein [Medicago truncatula] gi|357514029|ref|XP_003627303.1| chr0 59358855 59359466 -
2 domain predictions
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Lj0g3v0130889.1
n.a. PREDICTED: protein kinase and PP2C-like domain-containing protein-like [Glycine max] gi|356500335|ref|XP_003518988.1| chr0 59443945 59452563 +
2 domain predictions
 –