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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013057
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 242 results. Now displaying 2 of 5 with 50 rows per page. This search has taken 5.956s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v3975610.1
n.a. PREDICTED: amino acid permease 1-like [Cicer arietinum] gi|502124279|ref|XP_004498458.1| chr1 46921039 46921311 -
2 domain predictions
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Lj1g3v4763580.1
n.a. PREDICTED: proton-coupled amino acid transporter 3-like isoform X1 [Cicer arietinum] gi|502112325|ref|XP_004494293.1| chr1 57121097 57124374 +
2 domain predictions
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Lj2g3v0167030.1
n.a. PREDICTED: vacuolar amino acid transporter 1-like [Glycine max] gi|356510901|ref|XP_003524172.1| chr2 3030303 3033976 -
2 domain predictions
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Lj2g3v1167720.1
n.a. Lysine/histidine transporter [Medicago truncatula] gi|357488425|ref|XP_003614500.1| chr2 18373108 18376500 -
2 domain predictions
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Lj2g3v1337620.1
n.a. PREDICTED: proton-coupled amino acid transporter 3-like isoform X2 [Cicer arietinum] gi|502112328|ref|XP_004494294.1| chr2 20963065 20963524 -
2 domain predictions
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Lj2g3v1337630.2
n.a. PREDICTED: proton-coupled amino acid transporter 3-like isoform X2 [Cicer arietinum] gi|502112328|ref|XP_004494294.1| chr2 20963096 20968577 -
2 domain predictions
 –
Lj2g3v1599670.1
n.a. PREDICTED: proton-coupled amino acid transporter 1-like [Glycine max] gi|356529669|ref|XP_003533411.1| chr2 25297889 25298396 -
2 domain predictions
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Lj2g3v1599680.1
n.a. PREDICTED: proton-coupled amino acid transporter 3-like [Cicer arietinum] gi|502153763|ref|XP_004509454.1| chr2 25298826 25299179 -
2 domain predictions
 –
Lj2g3v2691300.1
n.a. Proline transporter [Medicago truncatula] gi|357492515|ref|XP_003616546.1| chr2 36187168 36188392 +
2 domain predictions
 –
Lj2g3v2726510.1
n.a. PREDICTED: auxin transporter-like protein 1-like isoform X1 [Cicer arietinum] gi|502097332|ref|XP_004490968.1| chr2 36298068 36305235 +
2 domain predictions
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Lj2g3v2843470.1
n.a. Amino acid transporter [Medicago truncatula] gi|357492901|ref|XP_003616739.1| chr2 37074618 37078424 +
2 domain predictions
 –
Lj2g3v2843490.1
n.a. Sodium-coupled neutral amino acid transporter [Medicago truncatula] gi|357492903|ref|XP_003616740.1| chr2 37081911 37085227 +
2 domain predictions
 –
Lj2g3v3336080.1
n.a. PREDICTED: probable amino acid permease 7-like [Cicer arietinum] gi|502099750|ref|XP_004491552.1| chr2 42222055 42225796 +
2 domain predictions
 –
Lj3g3v0041900.1
n.a. PREDICTED: sodium-coupled neutral amino acid transporter 4-like [Cicer arietinum] gi|502080677|ref|XP_004486639.1| chr3 480438 482455 -
2 domain predictions
 –
Lj3g3v0041910.1
n.a. PREDICTED: sodium-coupled neutral amino acid transporter 4-like [Cicer arietinum] gi|502080677|ref|XP_004486639.1| chr3 480438 482455 -
2 domain predictions
 –
Lj3g3v1128990.1
n.a. PREDICTED: GABA transporter 1-like [Cicer arietinum] gi|502145668|ref|XP_004506125.1| chr3 15200925 15208020 -
2 domain predictions
 –
Lj3g3v1129000.1
n.a. PREDICTED: GABA transporter 1-like [Cicer arietinum] gi|502145670|ref|XP_004506126.1| chr3 15208884 15209693 -
2 domain predictions
 –
Lj3g3v1129010.1
n.a. Lysine histidine transporter [Medicago truncatula] gi|357471999|ref|XP_003606284.1| chr3 15210041 15211928 -
2 domain predictions
 –
Lj3g3v1957970.1
n.a. Lysine/histidine transporter [Medicago truncatula] gi|357455549|ref|XP_003598055.1| chr3 25281164 25284791 -
2 domain predictions
 –
Lj3g3v3016600.1
n.a. PREDICTED: GABA transporter 1-like [Cicer arietinum] gi|502145668|ref|XP_004506125.1| chr3 37682479 37685681 +
2 domain predictions
 –
Lj3g3v3016600.2
n.a. PREDICTED: GABA transporter 1-like [Cicer arietinum] gi|502145668|ref|XP_004506125.1| chr3 37682479 37693653 +
2 domain predictions
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Lj3g3v3016610.1
n.a. PREDICTED: lysine histidine transporter 1-like [Glycine max] gi|356542702|ref|XP_003539805.1| chr3 37686558 37692029 +
2 domain predictions
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Lj3g3v3475730.1
n.a. RecName: Full=Auxin transporter-like protein 5; AltName: Full=AUX1-like protein 5; AltName: Full=MtLAX5gi|21586474|gb|AAM55306.1| auxin influx carrier protein [Medicago truncatula] gi|75245780|sp|Q8L883.1|LAX5_MEDTR chr3 42389119 42393855 +
2 domain predictions
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Lj4g3v0485960.1
n.a. PREDICTED: vacuolar amino acid transporter 1-like [Cicer arietinum] gi|502135258|ref|XP_004502272.1| chr4 8155639 8157820 +
2 domain predictions
 –
Lj4g3v1388960.1
n.a. PREDICTED: lysine histidine transporter 1-like [Cicer arietinum] gi|502176601|ref|XP_004515896.1| chr4 21496040 21497159 -
2 domain predictions
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Lj4g3v2526010.1
n.a. Lysine/histidine transporter [Medicago truncatula] gi|357463087|ref|XP_003601825.1| chr4 34060372 34060677 +
2 domain predictions
 –
Lj4g3v2526020.1
n.a. PREDICTED: LOW QUALITY PROTEIN: lysine histidine transporter 2-like [Glycine max] gi|356510883|ref|XP_003524163.1| chr4 34061457 34061810 +
2 domain predictions
 –
Lj4g3v2573860.1
n.a. PREDICTED: vacuolar amino acid transporter 1-like [Glycine max] gi|356510901|ref|XP_003524172.1| chr4 34395964 34398345 +
2 domain predictions
 –
Lj4g3v2826800.1
n.a. PREDICTED: amino acid permease 2-like [Cicer arietinum] gi|502139787|ref|XP_004503904.1| chr4 37890572 37894396 -
2 domain predictions
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Lj4g3v3002680.1
n.a. Transmembrane amino acid transporter family protein [Theobroma cacao] gi|508777714|gb|EOY24970.1| chr4 39743378 39745535 +
2 domain predictions
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Lj4g3v3002680.2
n.a. PREDICTED: probable GABA transporter 2-like [Cicer arietinum] gi|502139080|ref|XP_004503637.1| chr4 39743378 39749851 +
2 domain predictions
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Lj5g3v1015810.1
n.a. PREDICTED: GABA transporter 1-like isoform X2 [Cicer arietinum] gi|502115153|ref|XP_004495137.1| chr5 16882326 16886095 -
2 domain predictions
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Lj5g3v1015810.2
n.a. PREDICTED: GABA transporter 1-like isoform X1 [Cicer arietinum] gi|502115149|ref|XP_004495136.1| chr5 16882326 16886095 -
2 domain predictions
 –
Lj5g3v1015810.3
n.a. PREDICTED: GABA transporter 1-like isoform X2 [Cicer arietinum] gi|502115153|ref|XP_004495137.1| chr5 16883994 16886095 -
2 domain predictions
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Lj5g3v1738160.1
n.a. PREDICTED: lysine histidine transporter 1-like [Glycine max] gi|356535545|ref|XP_003536305.1| chr5 24969001 24977232 -
2 domain predictions
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Lj5g3v1738160.2
n.a. PREDICTED: lysine histidine transporter 1-like [Glycine max] gi|356535545|ref|XP_003536305.1| chr5 24969001 24977232 -
2 domain predictions
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Lj5g3v1774940.1
n.a. PREDICTED: lysine histidine transporter-like 6-like isoform X1 [Cicer arietinum] gi|502145020|ref|XP_004505841.1| chr5 25278068 25281568 -
2 domain predictions
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Lj5g3v1806960.1
n.a. Amino acid transporter [Medicago truncatula] gi|357443167|ref|XP_003591861.1| chr5 25731678 25738065 +
2 domain predictions
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Lj5g3v1806960.3
n.a. Amino acid transporter [Medicago truncatula] gi|357443167|ref|XP_003591861.1| chr5 25731969 25734762 +
2 domain predictions
 –
Lj6g3v0466600.1
n.a. PREDICTED: probable sodium-coupled neutral amino acid transporter 6-like [Glycine max] gi|356540026|ref|XP_003538492.1| chr6 4489189 4492738 +
2 domain predictions
 –
Lj6g3v0466610.1
n.a. n.a. chr6 4490591 4492946 -
2 domain predictions
 –
LotjaGi1g1v0011300.1
n.a. Amino acid transporter, putative; TAIR: AT5G23810.1 amino acid permease 7; Swiss-Prot: sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7; TrEMBL-Plants: tr|A0A0B2QW17|A0A0B2QW17_GLYSO Putative amino acid permease 7; Found in the gene: LotjaGi1g1v0011300 LjG1.1_chr1 1391119 1394885 -
2 domain predictions
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LotjaGi1g1v0011500.1
n.a. Amino acid permease; TAIR: AT5G23810.1 amino acid permease 7; Swiss-Prot: sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7; TrEMBL-Plants: tr|I1JJM9|I1JJM9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0011500 LjG1.1_chr1 1406381 1410820 -
2 domain predictions
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LotjaGi1g1v0011500.2
n.a. Amino acid permease; TAIR: AT5G23810.1 amino acid permease 7; Swiss-Prot: sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7; TrEMBL-Plants: tr|I1JJM9|I1JJM9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0011500 LjG1.1_chr1 1406796 1410003 -
2 domain predictions
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LotjaGi1g1v0072100.1
n.a. Amino acid transporter protein; TAIR: AT3G56200.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q6DEL1|S38A7_DANRE Putative sodium-coupled neutral amino acid transporter 7; TrEMBL-Plants: tr|G7K7B8|G7K7B8_MEDTR Transmembrane amino acid transporter family protein; Found in the gene: LotjaGi1g1v0072100 LjG1.1_chr1 10158446 10162076 -
2 domain predictions
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LotjaGi1g1v0072300.1
n.a. Amino acid transporter, putative; TAIR: AT3G56200.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q6DEL1|S38A7_DANRE Putative sodium-coupled neutral amino acid transporter 7; TrEMBL-Plants: tr|I1JIB8|I1JIB8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0072300 LjG1.1_chr1 10165572 10169814 -
2 domain predictions
 –
LotjaGi1g1v0072300.2
n.a. Amino acid transporter, putative; TAIR: AT3G56200.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q6DEL1|S38A7_DANRE Putative sodium-coupled neutral amino acid transporter 7; TrEMBL-Plants: tr|I1JIB8|I1JIB8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0072300 LjG1.1_chr1 10166004 10169419 -
2 domain predictions
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LotjaGi1g1v0079200.1
n.a. Auxin influx transporter; TAIR: AT2G38120.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q9FEL8|LAX1_MEDTR Auxin transporter-like protein 1; TrEMBL-Plants: tr|V7B7B9|V7B7B9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0079200 LjG1.1_chr1 11418886 11426735 -
2 domain predictions
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LotjaGi1g1v0079200.10
n.a. Auxin influx transporter; TAIR: AT2G38120.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q9FEL8|LAX1_MEDTR Auxin transporter-like protein 1; TrEMBL-Plants: tr|V7B7B9|V7B7B9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0079200 LjG1.1_chr1 11419406 11425718 -
2 domain predictions
 –
LotjaGi1g1v0079200.11
n.a. Auxin transporter-like protein 2; TAIR: AT2G38120.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q9FEL8|LAX1_MEDTR Auxin transporter-like protein 1; TrEMBL-Plants: tr|V7B7B9|V7B7B9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0079200 LjG1.1_chr1 11421564 11425718 -
2 domain predictions
 –