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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR016167
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We have found 64 results. Now displaying 2 of 2 with 50 rows per page. This search has taken 5.139s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi5g1v0046100.1
n.a. Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G21482.1 cytokinin oxidase 7; Swiss-Prot: sp|Q9FUJ1|CKX7_ARATH Cytokinin dehydrogenase 7; TrEMBL-Plants: tr|A0A0U2T7D7|A0A0U2T7D7_LOTJA Cytokinin oxidase/dehydrogenase 7; Found in the gene: LotjaGi5g1v0046100 LjG1.1_chr5 7770197 7777705 -
2 domain predictions
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LotjaGi5g1v0133000.1
n.a. L-galactono-1,4-lactone dehydrogenase; TAIR: AT3G47930.1 L-galactono-1,4-lactone dehydrogenase; Swiss-Prot: sp|Q9SU56|GLDH_ARATH L-galactono-1,4-lactone dehydrogenase, mitochondrial; TrEMBL-Plants: tr|Q0ZHB8|Q0ZHB8_LOTJA Mitochondrial L-galactono-1,4-lactone dehydrogenase; Found in the gene: LotjaGi5g1v0133000 LjG1.1_chr5 31163725 31178449 -
2 domain predictions
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LotjaGi5g1v0133000.2
n.a. L-galactono-1,4-lactone dehydrogenase; TAIR: AT3G47930.1 L-galactono-1,4-lactone dehydrogenase; Swiss-Prot: sp|Q9SU56|GLDH_ARATH L-galactono-1,4-lactone dehydrogenase, mitochondrial; TrEMBL-Plants: tr|Q0ZHB8|Q0ZHB8_LOTJA Mitochondrial L-galactono-1,4-lactone dehydrogenase; Found in the gene: LotjaGi5g1v0133000 LjG1.1_chr5 31164740 31178376 -
2 domain predictions
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LotjaGi5g1v0133000.3
n.a. L-galactono-1,4-lactone dehydrogenase; TAIR: AT3G47930.1 L-galactono-1,4-lactone dehydrogenase; Swiss-Prot: sp|Q9SU56|GLDH_ARATH L-galactono-1,4-lactone dehydrogenase, mitochondrial; TrEMBL-Plants: tr|Q0ZHB8|Q0ZHB8_LOTJA Mitochondrial L-galactono-1,4-lactone dehydrogenase; Found in the gene: LotjaGi5g1v0133000 LjG1.1_chr5 31164740 31178376 -
2 domain predictions
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LotjaGi5g1v0194900.1
n.a. FAD-binding berberine family protein; TAIR: AT5G44390.1 FAD-binding Berberine family protein; Swiss-Prot: sp|P93479|RETO_PAPSO Reticuline oxidase; TrEMBL-Plants: tr|I1LC19|I1LC19_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0194900 LjG1.1_chr5 49001907 49010563 +
2 domain predictions
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LotjaGi5g1v0195000.1
n.a. FAD-binding berberine family protein; TAIR: AT5G44400.1 FAD-binding Berberine family protein; Swiss-Prot: sp|P93479|RETO_PAPSO Reticuline oxidase; TrEMBL-Plants: tr|I1NID0|I1NID0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0195000 LjG1.1_chr5 49016283 49018343 +
2 domain predictions
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LotjaGi6g1v0172500.1
n.a. FAD-binding berberine family protein; TAIR: AT1G30700.1 FAD-binding Berberine family protein; Swiss-Prot: sp|Q9SA85|BBE8_ARATH Berberine bridge enzyme-like 8; TrEMBL-Plants: tr|I3S2I4|I3S2I4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0172500 LjG1.1_chr6 45998208 46001601 -
2 domain predictions
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LotjaGi6g1v0231200.1
n.a. Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q9LTS3|CKX3_ARATH Cytokinin dehydrogenase 3; TrEMBL-Plants: tr|A0A0U2V8L5|A0A0U2V8L5_LOTJA Cytokinin oxidase/dehydrogenase 3; Found in the gene: LotjaGi6g1v0231200 LjG1.1_chr6 53987588 53992563 -
2 domain predictions
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LotjaGi6g1v0231200.2
n.a. Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q9LTS3|CKX3_ARATH Cytokinin dehydrogenase 3; TrEMBL-Plants: tr|A0A0U2V8L5|A0A0U2V8L5_LOTJA Cytokinin oxidase/dehydrogenase 3; Found in the gene: LotjaGi6g1v0231200 LjG1.1_chr6 53987841 53991936 -
2 domain predictions
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LotjaGi6g1v0231300.1
n.a. Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q5Z620|CKX10_ORYSJ Cytokinin dehydrogenase 10; TrEMBL-Plants: tr|A0A0U2UQP8|A0A0U2UQP8_LOTJA Cytokinin oxidase/dehydrogenase 4; Found in the gene: LotjaGi6g1v0231300 LjG1.1_chr6 54003397 54007681 -
2 domain predictions
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LotjaGi6g1v0231300.2
n.a. Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q9LTS3|CKX3_ARATH Cytokinin dehydrogenase 3; TrEMBL-Plants: tr|A0A0U2UQP8|A0A0U2UQP8_LOTJA Cytokinin oxidase/dehydrogenase 4; Found in the gene: LotjaGi6g1v0231300 LjG1.1_chr6 54003397 54007681 -
2 domain predictions
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LotjaGi6g1v0266700.1
n.a. FAD-binding berberine family protein; TAIR: AT1G30700.1 FAD-binding Berberine family protein; Swiss-Prot: sp|Q9SA85|BBE8_ARATH Berberine bridge enzyme-like 8; TrEMBL-Plants: tr|I3S2I4|I3S2I4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0266700 LjG1.1_chr6 58050700 58056926 +
2 domain predictions
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LotjaGi6g1v0267900.1
n.a. FAD-binding berberine family protein; TAIR: AT1G30760.2 FAD-binding Berberine family protein; Swiss-Prot: sp|Q93ZA3|BBE13_ARATH Berberine bridge enzyme-like 13; TrEMBL-Plants: tr|I1L0H6|I1L0H6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0267900 LjG1.1_chr6 58276284 58288032 +
2 domain predictions
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LotjaGi6g1v0267900.2
n.a. FAD-binding berberine family protein; TAIR: AT1G30760.2 FAD-binding Berberine family protein; Swiss-Prot: sp|Q93ZA3|BBE13_ARATH Berberine bridge enzyme-like 13; TrEMBL-Plants: tr|I1L0H6|I1L0H6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0267900 LjG1.1_chr6 58276534 58278168 +
2 domain predictions
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