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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017986
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 823 results. Now displaying 7 of 17 with 50 rows per page. This search has taken 5.938s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj5g3v1692550.3
n.a. PREDICTED: LOW QUALITY PROTEIN: LEC14B protein-like [Cicer arietinum] gi|502118008|ref|XP_004496055.1| chr5 23959126 23963168 +
3 domain predictions
1 GO term
Lj5g3v1697440.2
n.a. RecName: Full=Putative E3 ubiquitin-protein ligase LIN-1; AltName: Full=Protein cerberus] gi|353558931|sp|C6L7U1.2|LIN1_LOTJA chr5 24293317 24296553 +
3 domain predictions
1 GO term
Lj5g3v1699460.1
n.a. PREDICTED: SEC12-like protein 1-like [Cicer arietinum] gi|502118214|ref|XP_004496156.1| chr5 24718683 24724989 +
3 domain predictions
1 GO term
Lj5g3v1700480.1
n.a. PREDICTED: probable U3 small nucleolar RNA-associated protein 7-like [Glycine max] gi|356576345|ref|XP_003556293.1| chr5 24736151 24742180 +
3 domain predictions
1 GO term
Lj5g3v1712580.1
n.a. PREDICTED: protein TOPLESS-like [Glycine max] gi|356526242|ref|XP_003531727.1| chr5 24797726 24803174 +
3 domain predictions
1 GO term
Lj5g3v1913930.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] gi|502118852|ref|XP_004496419.1| chr5 27128083 27139098 +
2 domain predictions
1 GO term
Lj5g3v1914060.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] gi|502118852|ref|XP_004496419.1| chr5 27168181 27169236 +
2 domain predictions
1 GO term
Lj5g3v2045300.2
n.a. PREDICTED: probable inactive serine/threonine-protein kinase lvsG-like [Cicer arietinum] gi|502119578|ref|XP_004496667.1| chr5 29063303 29077298 -
3 domain predictions
1 GO term
Lj5g3v2112020.1
n.a. Transducin family protein / WD-40 repeat family protein [Theobroma cacao] gi|508706512|gb|EOX98408.1| chr5 30234134 30240205 +
3 domain predictions
1 GO term
Lj5g3v2133790.1
n.a. PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 12-like isoform X2 [Cicer arietinum] gi|502126642|ref|XP_004499384.1| chr5 30656468 30663085 +
3 domain predictions
1 GO term
Lj5g3v2133800.1
n.a. PREDICTED: 66 kDa stress protein-like isoform X2 [Cicer arietinum] gi|502120460|ref|XP_004496970.1| chr5 30665891 30670034 +
3 domain predictions
1 GO term
Lj5g3v2169550.1
n.a. PREDICTED: notchless protein homolog [Glycine max] gi|356559633|ref|XP_003548103.1| chr5 31136956 31142473 +
3 domain predictions
1 GO term
Lj5g3v2240840.1
n.a. PREDICTED: angio-associated migratory cell protein-like [Glycine max] gi|356576129|ref|XP_003556186.1| chr5 32191434 32195422 -
3 domain predictions
1 GO term
Lj5g3v2240840.2
n.a. PREDICTED: angio-associated migratory cell protein-like [Glycine max] gi|356576129|ref|XP_003556186.1| chr5 32191434 32195313 -
2 domain predictions
1 GO term
Lj5g3v2257200.1
n.a. PREDICTED: DDB1- and CUL4-associated factor 8-like [Glycine max] gi|356536404|ref|XP_003536728.1| chr5 32649333 32654420 -
3 domain predictions
1 GO term
Lj5g3v2257200.2
n.a. PREDICTED: DDB1- and CUL4-associated factor 8-like [Glycine max] gi|356536404|ref|XP_003536728.1| chr5 32650372 32654420 -
3 domain predictions
1 GO term
Lj5g3v2260750.1
n.a. PREDICTED: rae1-like protein At1g80670-like [Cicer arietinum] gi|502118278|ref|XP_004496188.1| chr5 32930992 32933027 -
3 domain predictions
1 GO term
Lj5g3v2288600.1
n.a. PREDICTED: splicing factor 3B subunit 3-like [Glycine max] gi|356576847|ref|XP_003556541.1| chr5 33285234 33290116 +
2 domain predictions
1 GO term
Lj6g3v0082160.1
n.a. PREDICTED: U-box domain-containing protein 72 [Glycine max] gi|356575233|ref|XP_003555746.1| chr6 1075253 1083417 +
3 domain predictions
1 GO term
Lj6g3v0145990.1
n.a. PREDICTED: anaphase-promoting complex subunit cdc20-like [Cicer arietinum] gi|502122681|ref|XP_004497861.1| chr6 1563797 1566452 +
3 domain predictions
1 GO term
Lj6g3v0156180.1
n.a. PREDICTED: anaphase-promoting complex subunit cdc20-like [Cicer arietinum] gi|502122681|ref|XP_004497861.1| chr6 1649791 1653219 -
3 domain predictions
1 GO term
Lj6g3v0156180.2
n.a. PREDICTED: anaphase-promoting complex subunit cdc20-like [Cicer arietinum] gi|502122681|ref|XP_004497861.1| chr6 1649791 1667672 -
3 domain predictions
1 GO term
Lj6g3v0157220.1
n.a. PREDICTED: anaphase-promoting complex subunit cdc20-like [Glycine max] gi|356533257|ref|XP_003535182.1| chr6 1681109 1684977 -
3 domain predictions
1 GO term
Lj6g3v0305070.1
n.a. PREDICTED: transducin beta-like protein 2-like [Glycine max] gi|356532101|ref|XP_003534612.1| chr6 3068193 3078676 +
3 domain predictions
1 GO term
Lj6g3v0523990.1
n.a. Nuclear pore complex protein-related isoform 1 [Theobroma cacao] gi|508725917|gb|EOY17814.1| chr6 5224555 5232950 +
2 domain predictions
1 GO term
Lj6g3v0647600.1
n.a. PREDICTED: THO complex subunit 3-like isoform X2 [Cicer arietinum] gi|502129124|ref|XP_004500191.1| chr6 6429036 6434429 +
3 domain predictions
1 GO term
Lj6g3v0647600.2
n.a. PREDICTED: THO complex subunit 3-like isoform X2 [Cicer arietinum] gi|502129124|ref|XP_004500191.1| chr6 6429036 6434429 +
3 domain predictions
1 GO term
Lj6g3v0670010.1
n.a. PREDICTED: enhancer of mRNA-decapping protein 4-like [Glycine max] gi|356524411|ref|XP_003530822.1| chr6 6631739 6640183 -
3 domain predictions
1 GO term
Lj6g3v0670010.2
n.a. PREDICTED: enhancer of mRNA-decapping protein 4-like [Glycine max] gi|356524411|ref|XP_003530822.1| chr6 6631739 6640183 -
3 domain predictions
1 GO term
Lj6g3v0820220.1
n.a. SEC13 family protein [Lotus japonicus] gi|300392454|dbj|BAJ10727.1| chr6 8362930 8364912 +
3 domain predictions
1 GO term
Lj6g3v0925910.1
n.a. actin-related protein component 1 [Lotus japonicus] gi|400177677|gb|AFP72374.1| chr6 9846124 9855788 -
3 domain predictions
1 GO term
Lj6g3v0925910.2
n.a. actin-related protein component 1 [Lotus japonicus] gi|400177677|gb|AFP72374.1| chr6 9846124 9855788 -
3 domain predictions
1 GO term
Lj6g3v0925910.3
n.a. actin-related protein component 1 [Lotus japonicus] gi|400177677|gb|AFP72374.1| chr6 9849429 9855788 -
3 domain predictions
1 GO term
Lj6g3v0927490.2
n.a. PREDICTED: vacuolar protein sorting-associated protein 16 homolog [Cicer arietinum] gi|502128485|ref|XP_004499978.1| chr6 10103666 10115152 +
2 domain predictions
1 GO term
Lj6g3v1018310.1
n.a. PREDICTED: WD40 repeat-containing protein SMU1-like isoform X1 [Cicer arietinum] gi|502152361|ref|XP_004508891.1| chr6 11291741 11301581 +
3 domain predictions
1 GO term
Lj6g3v1093610.1
n.a. p21-activated protein kinase-interacting protein 1-like protein [Medicago truncatula] gi|357450557|ref|XP_003595555.1| chr6 13440261 13443733 -
3 domain predictions
1 GO term
Lj6g3v1259720.1
n.a. FVE [Pisum sativum] gi|61611729|gb|AAX47182.1| chr6 15408805 15414223 +
3 domain predictions
1 GO term
Lj6g3v1318650.1
n.a. PREDICTED: transducin beta-like protein 3-like [Glycine max] gi|356513431|ref|XP_003525417.1| chr6 15714740 15717532 -
2 domain predictions
1 GO term
Lj6g3v1422190.1
n.a. PREDICTED: nucleolar protein 10-like [Glycine max] gi|356529461|ref|XP_003533310.1| chr6 16888726 16896719 +
2 domain predictions
1 GO term
Lj6g3v1464010.1
n.a. PREDICTED: protein pleiotropic regulatory locus 1-like [Glycine max] gi|356556092|ref|XP_003546361.1| chr6 17188410 17194314 -
3 domain predictions
1 GO term
Lj6g3v1464020.1
n.a. transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|334185156|ref|NP_001189833.1| chr6 17197175 17203576 -
3 domain predictions
1 GO term
Lj6g3v1513530.1
n.a. PREDICTED: topless-related protein 2-like [Cicer arietinum] gi|502150907|ref|XP_004508183.1| chr6 17425648 17435972 +
2 domain predictions
1 GO term
Lj6g3v1513530.2
n.a. PREDICTED: topless-related protein 2-like [Cicer arietinum] gi|502150907|ref|XP_004508183.1| chr6 17425648 17431016 +
3 domain predictions
1 GO term
Lj6g3v1559380.1
n.a. PREDICTED: PH-interacting protein-like isoform X2 [Cicer arietinum] gi|502084839|ref|XP_004487773.1| chr6 17801938 17818769 -
3 domain predictions
1 GO term
Lj6g3v1655350.1
n.a. PREDICTED: U3 small nucleolar RNA-interacting protein 2-like isoform 1 [Glycine max] gi|356533031|ref|XP_003535072.1| chr6 18613258 18617488 -
3 domain predictions
1 GO term
Lj6g3v1694940.1
n.a. WD repeat-containing protein [Medicago truncatula] gi|357448221|ref|XP_003594386.1| chr6 19151580 19156971 -
3 domain predictions
1 GO term
Lj6g3v1705080.1
n.a. PREDICTED: enhancer of mRNA-decapping protein 4-like [Glycine max] gi|356558011|ref|XP_003547303.1| chr6 19229565 19235541 -
2 domain predictions
1 GO term
Lj6g3v1705080.2
n.a. PREDICTED: enhancer of mRNA-decapping protein 4-like [Glycine max] gi|356558011|ref|XP_003547303.1| chr6 19232848 19238419 -
3 domain predictions
1 GO term
Lj6g3v1705080.3
n.a. PREDICTED: enhancer of mRNA-decapping protein 4-like [Glycine max] gi|356558011|ref|XP_003547303.1| chr6 19233232 19238419 -
3 domain predictions
1 GO term
Lj6g3v1916020.1
n.a. PREDICTED: LEC14B homolog [Glycine max] gi|356555581|ref|XP_003546109.1| chr6 21609171 21618317 -
3 domain predictions
1 GO term