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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000760
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 32 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.783s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0215819.1
n.a. PREDICTED: PAP-specific phosphatase HAL2-like [Glycine max] gi|356514784|ref|XP_003526083.1| chr0 109461074 109468968 +
3 domain predictions
1 GO term
Lj0g3v0215819.3
n.a. PREDICTED: PAP-specific phosphatase HAL2-like [Glycine max] gi|356545365|ref|XP_003541114.1| chr0 109464548 109468968 +
3 domain predictions
1 GO term
Lj0g3v0251059.1
n.a. PREDICTED: phosphatase IMPL1, chloroplastic-like [Glycine max] gi|356516969|ref|XP_003527163.1| chr0 130176514 130183247 -
4 domain predictions
1 GO term
Lj0g3v0271169.1
n.a. PREDICTED: PAP-specific phosphatase HAL2-like [Glycine max] gi|356549397|ref|XP_003543080.1| chr0 140458336 140459350 -
3 domain predictions
1 GO term
Lj1g3v3381210.1
n.a. PREDICTED: bifunctional phosphatase IMPL2, chloroplastic-like [Cicer arietinum] gi|502114422|ref|XP_004494954.1| chr1 38720606 38724096 -
4 domain predictions
1 GO term
Lj1g3v3381210.2
n.a. PREDICTED: bifunctional phosphatase IMPL2, chloroplastic-like [Cicer arietinum] gi|502114422|ref|XP_004494954.1| chr1 38720606 38724096 -
4 domain predictions
1 GO term
Lj4g3v0119960.1
n.a. inositol monophosphatase [Phaseolus vulgaris] gi|227270347|emb|CAX94844.1| chr4 1149854 1153510 -
4 domain predictions
1 GO term
Lj4g3v0231940.1
n.a. PREDICTED: SAL1 phosphatase-like [Glycine max] gi|356510802|ref|XP_003524123.1| chr4 2855852 2859995 +
3 domain predictions
1 GO term
Lj4g3v0231940.2
n.a. PREDICTED: SAL1 phosphatase-like [Glycine max] gi|356510802|ref|XP_003524123.1| chr4 2855852 2863762 +
3 domain predictions
1 GO term
Lj4g3v0449990.1
n.a. PAP-specific phosphatase HAL2-like protein [Medicago truncatula] gi|357446387|ref|XP_003593471.1| chr4 6061598 6064021 -
3 domain predictions
1 GO term
Lj4g3v0450010.1
n.a. PREDICTED: PAP-specific phosphatase HAL2-like [Cicer arietinum] gi|502142507|ref|XP_004504991.1| chr4 6073948 6077437 +
4 domain predictions
1 GO term
Lj6g3v1753250.1
n.a. inositol monophosphatase [Phaseolus vulgaris] gi|227270347|emb|CAX94844.1| chr6 19770100 19774240 -
4 domain predictions
1 GO term
Lj6g3v2085700.1
n.a. Inositol monophosphatase family protein isoform 1 [Theobroma cacao] gi|508781186|gb|EOY28442.1| chr6 24614565 24619225 +
3 domain predictions
1 GO term
Lj6g3v2085700.2
n.a. Inositol monophosphatase family protein isoform 2 [Theobroma cacao] gi|508781187|gb|EOY28443.1| chr6 24614565 24617985 +
3 domain predictions
1 GO term
LotjaGi1g1v0564300.1
n.a. Inositol-1-monophosphatase; TAIR: AT4G39120.1 inositol monophosphatase family protein; Swiss-Prot: sp|Q6NPM8|HIS7_ARATH Bifunctional phosphatase IMPL2, chloroplastic; TrEMBL-Plants: tr|G7J7Q5|G7J7Q5_MEDTR Inositol monophosphatase; Found in the gene: LotjaGi1g1v0564300 LjG1.1_chr1 109762526 109768740 -
3 domain predictions
1 GO term
LotjaGi1g1v0564300.2
n.a. Inositol-1-monophosphatase; TAIR: AT4G39120.1 inositol monophosphatase family protein; Swiss-Prot: sp|Q6NPM8|HIS7_ARATH Bifunctional phosphatase IMPL2, chloroplastic; TrEMBL-Plants: tr|G7J7Q5|G7J7Q5_MEDTR Inositol monophosphatase; Found in the gene: LotjaGi1g1v0564300 LjG1.1_chr1 109762526 109768740 -
3 domain predictions
1 GO term
LotjaGi1g1v0564300.3
n.a. Inositol-1-monophosphatase; TAIR: AT4G39120.1 inositol monophosphatase family protein; Swiss-Prot: sp|Q6NPM8|HIS7_ARATH Bifunctional phosphatase IMPL2, chloroplastic; TrEMBL-Plants: tr|G7J7Q5|G7J7Q5_MEDTR Inositol monophosphatase; Found in the gene: LotjaGi1g1v0564300 LjG1.1_chr1 109762559 109768777 -
3 domain predictions
1 GO term
LotjaGi1g1v0564300.4
n.a. Inositol-1-monophosphatase; TAIR: AT4G39120.1 inositol monophosphatase family protein; Swiss-Prot: sp|Q6NPM8|HIS7_ARATH Bifunctional phosphatase IMPL2, chloroplastic; TrEMBL-Plants: tr|G7J7Q5|G7J7Q5_MEDTR Inositol monophosphatase; Found in the gene: LotjaGi1g1v0564300 LjG1.1_chr1 109762559 109768777 -
3 domain predictions
1 GO term
LotjaGi3g1v0321500.1
n.a. 3(2),5-bisphosphate nucleotidase HAL2; TAIR: AT5G54390.1 HAL2-like protein; Swiss-Prot: sp|Q38945|DPNPH_ARATH PAP-specific phosphatase HAL2-like; TrEMBL-Plants: tr|A0A151TPN4|A0A151TPN4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0321500 LjG1.1_chr3 68262057 68267394 -
2 domain predictions
1 GO term
LotjaGi4g1v0021400.1
n.a. 3'(2'),5'-bisphosphate nucleotidase 1; TAIR: AT5G63980.1 SAL1 phosphatase-like protein; Swiss-Prot: sp|Q42546|DPNP1_ARATH SAL1 phosphatase; TrEMBL-Plants: tr|A0A0B2R1H5|A0A0B2R1H5_GLYSO SAL1 phosphatase; Found in the gene: LotjaGi4g1v0021400 LjG1.1_chr4 2614413 2618841 +
3 domain predictions
1 GO term
LotjaGi4g1v0021400.2
n.a. 3'(2'),5'-bisphosphate nucleotidase 1; TAIR: AT5G63980.1 SAL1 phosphatase-like protein; Swiss-Prot: sp|Q42546|DPNP1_ARATH SAL1 phosphatase; TrEMBL-Plants: tr|A0A0B2R1H5|A0A0B2R1H5_GLYSO SAL1 phosphatase; Found in the gene: LotjaGi4g1v0021400 LjG1.1_chr4 2614413 2623224 +
3 domain predictions
1 GO term
LotjaGi4g1v0021400.3
n.a. 3'(2'),5'-bisphosphate nucleotidase 1; TAIR: AT5G63980.1 SAL1 phosphatase-like protein; Swiss-Prot: sp|Q42546|DPNP1_ARATH SAL1 phosphatase; TrEMBL-Plants: tr|A0A0B2R1H5|A0A0B2R1H5_GLYSO SAL1 phosphatase; Found in the gene: LotjaGi4g1v0021400 LjG1.1_chr4 2614548 2618841 +
3 domain predictions
1 GO term
LotjaGi4g1v0050900.1
n.a. 3(2),5-bisphosphate nucleotidase HAL2; TAIR: AT5G54390.1 HAL2-like protein; Swiss-Prot: sp|Q38945|DPNPH_ARATH PAP-specific phosphatase HAL2-like; TrEMBL-Plants: tr|I3S1P4|I3S1P4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0050900 LjG1.1_chr4 6169872 6180525 -
3 domain predictions
1 GO term
LotjaGi4g1v0051100.1
n.a. 3(2),5-bisphosphate nucleotidase HAL2; TAIR: AT5G54390.1 HAL2-like protein; Swiss-Prot: sp|Q38945|DPNPH_ARATH PAP-specific phosphatase HAL2-like; TrEMBL-Plants: tr|I3S1P4|I3S1P4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0051100 LjG1.1_chr4 6190325 6194226 +
3 domain predictions
1 GO term
LotjaGi6g1v0021500.1
n.a. Inositol-1-monophosphatase family protein; TAIR: AT1G31190.1 myo-inositol monophosphatase like 1; Swiss-Prot: sp|Q94F00|IMPL1_ARATH Phosphatase IMPL1, chloroplastic; TrEMBL-Plants: tr|I3RZN3|I3RZN3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0021500 LjG1.1_chr6 3960668 3967857 -
3 domain predictions
1 GO term
LotjaGi6g1v0021500.2
n.a. Inositol-1-monophosphatase family protein; TAIR: AT1G31190.1 myo-inositol monophosphatase like 1; Swiss-Prot: sp|Q94F00|IMPL1_ARATH Phosphatase IMPL1, chloroplastic; TrEMBL-Plants: tr|I3RZN3|I3RZN3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0021500 LjG1.1_chr6 3961114 3966652 -
3 domain predictions
1 GO term
LotjaGi6g1v0021500.3
n.a. Inositol-1-monophosphatase family protein; TAIR: AT1G31190.1 myo-inositol monophosphatase like 1; Swiss-Prot: sp|Q94F00|IMPL1_ARATH Phosphatase IMPL1, chloroplastic; TrEMBL-Plants: tr|I3RZN3|I3RZN3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0021500 LjG1.1_chr6 3961114 3966859 -
3 domain predictions
1 GO term
LotjaGi6g1v0021500.4
n.a. Inositol-1-monophosphatase family protein; TAIR: AT1G31190.1 myo-inositol monophosphatase like 1; Swiss-Prot: sp|Q94F00|IMPL1_ARATH Phosphatase IMPL1, chloroplastic; TrEMBL-Plants: tr|I3RZN3|I3RZN3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0021500 LjG1.1_chr6 3961114 3966960 -
3 domain predictions
1 GO term
LotjaGi6g1v0286000.1
n.a. Inositol-1-monophosphatase family protein; TAIR: AT3G02870.1 Inositol monophosphatase family protein; Swiss-Prot: sp|P54928|IMP3_SOLLC Inositol monophosphatase 3; TrEMBL-Plants: tr|I3S8Q4|I3S8Q4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0286000 LjG1.1_chr6 60341310 60345945 -
3 domain predictions
1 GO term
LotjaGi6g1v0337300.1
n.a. 3(2),5-bisphosphate nucleotidase HAL2; TAIR: AT5G54390.1 HAL2-like protein; Swiss-Prot: sp|Q38945|DPNPH_ARATH PAP-specific phosphatase HAL2-like; TrEMBL-Plants: tr|A0A0R0G583|A0A0R0G583_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0337300 LjG1.1_chr6 65181367 65184934 -
2 domain predictions
1 GO term
LotjaGi6g1v0339700.1
n.a. 3'(2'),5'-bisphosphate nucleotidase 1; TAIR: AT4G05090.1 Inositol monophosphatase family protein; Swiss-Prot: sp|Q9M0Y6|DPNPM_ARATH Putative PAP-specific phosphatase, mitochondrial; TrEMBL-Plants: tr|A0A0R0G610|A0A0R0G610_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0339700 LjG1.1_chr6 65354002 65359173 +
2 domain predictions
1 GO term
LotjaGi6g1v0339700.2
n.a. 3(2),5-bisphosphate nucleotidase HAL2; TAIR: AT4G05090.1 Inositol monophosphatase family protein; Swiss-Prot: sp|Q9M0Y6|DPNPM_ARATH Putative PAP-specific phosphatase, mitochondrial; TrEMBL-Plants: tr|A0A072V4C7|A0A072V4C7_MEDTR Inositol monophosphatase family protein; Found in the gene: LotjaGi6g1v0339700 LjG1.1_chr6 65354253 65359116 +
2 domain predictions
1 GO term