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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001251
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 115 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 5.699s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0032219.1
n.a. PREDICTED: random slug protein 5-like isoform X1 [Cicer arietinum] gi|502166215|ref|XP_004513825.1| chr0 10139623 10142259 +
6 domain predictions
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Lj0g3v0077589.2
n.a. PREDICTED: motile sperm domain-containing protein 2-like [Cicer arietinum] gi|502152355|ref|XP_004508888.1| chr0 29775526 29778457 +
6 domain predictions
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Lj0g3v0092239.1
n.a. PREDICTED: random slug protein 5-like isoform X1 [Cicer arietinum] gi|502126009|ref|XP_004499146.1| chr0 38346719 38350152 +
6 domain predictions
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Lj0g3v0105949.1
n.a. PREDICTED: random slug protein 5-like isoform X1 [Cicer arietinum] gi|502166215|ref|XP_004513825.1| chr0 45590571 45596241 -
6 domain predictions
 –
Lj0g3v0170729.1
n.a. PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Cicer arietinum] gi|502161649|ref|XP_004512237.1| chr0 81696768 81698168 +
4 domain predictions
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Lj0g3v0249549.1
n.a. Sec14p-like phosphatidylinositol transfer family protein isoform 1 [Theobroma cacao] gi|508719950|gb|EOY11847.1| chr0 129323198 129328160 -
6 domain predictions
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Lj0g3v0315829.1
n.a. PREDICTED: phosphatidylinositol transfer protein CSR1-like [Glycine max] gi|356499583|ref|XP_003518618.1| chr0 164914466 164923272 +
6 domain predictions
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Lj1g3v0638710.1
n.a. PREDICTED: random slug protein 5-like [Glycine max] gi|356508120|ref|XP_003522808.1| chr1 8261697 8268255 +
6 domain predictions
 –
Lj1g3v1381010.1
n.a. PREDICTED: patellin-5-like [Glycine max] gi|356507414|ref|XP_003522462.1| chr1 16753270 16756364 +
6 domain predictions
 –
Lj1g3v1409270.1
n.a. PREDICTED: random slug protein 5-like [Cicer arietinum] gi|502133430|ref|XP_004501761.1| chr1 17210117 17234274 +
3 domain predictions
 –
Lj1g3v1409270.2
n.a. PREDICTED: random slug protein 5-like [Cicer arietinum] gi|502133430|ref|XP_004501761.1| chr1 17211290 17235391 +
6 domain predictions
 –
Lj1g3v1409270.3
n.a. PREDICTED: random slug protein 5-like [Cicer arietinum] gi|502133430|ref|XP_004501761.1| chr1 17211290 17235228 +
6 domain predictions
 –
Lj1g3v2052980.1
n.a. PREDICTED: rho GTPase-activating protein 68F-like [Cicer arietinum] gi|502108193|ref|XP_004493410.1| chr1 24218126 24218346 -
2 domain predictions
 –
Lj1g3v2127280.1
n.a. Sec14p-like phosphatidylinositol transfer family protein isoform 1 [Theobroma cacao] gi|508706052|gb|EOX97948.1| chr1 25610382 25615371 -
6 domain predictions
 –
Lj1g3v2127310.1
n.a. Sec14p-like phosphatidylinositol transfer family protein isoform 4 [Theobroma cacao] gi|508706055|gb|EOX97951.1| chr1 25619349 25619876 -
5 domain predictions
 –
Lj1g3v2127320.1
n.a. Sec14 cytosolic factor [Medicago truncatula] gi|357467369|ref|XP_003603969.1| chr1 25619827 25621182 -
4 domain predictions
 –
Lj1g3v2391210.1
n.a. PREDICTED: patellin-6-like [Cicer arietinum] gi|502104343|ref|XP_004492509.1| chr1 28177135 28179722 +
6 domain predictions
 –
Lj1g3v3381380.1
n.a. phosphatidylinositol transfer-like protein III [Lotus japonicus] gi|14486705|gb|AAK63247.1|AF367433_1 chr1 38799052 38804945 +
6 domain predictions
 –
Lj1g3v3381390.1
n.a. PREDICTED: patellin-3-like [Glycine max] gi|356509557|ref|XP_003523514.1| chr1 38806141 38810610 -
6 domain predictions
 –
Lj1g3v3541590.1
n.a. PREDICTED: SEC14 cytosolic factor-like isoform X1 [Cicer arietinum] gi|502167871|ref|XP_004514271.1| chr1 40677820 40688061 +
6 domain predictions
 –
Lj1g3v4027110.1
n.a. CRAL-TRIO domain-containing protein [Medicago truncatula] gi|357509005|ref|XP_003624791.1| chr1 47680292 47682234 -
6 domain predictions
 –
Lj1g3v4027110.2
n.a. CRAL-TRIO domain-containing protein [Medicago truncatula] gi|357509005|ref|XP_003624791.1| chr1 47680292 47684299 -
6 domain predictions
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Lj1g3v4156080.1
n.a. PREDICTED: rho GTPase-activating protein 68F-like [Cicer arietinum] gi|502108193|ref|XP_004493410.1| chr1 49443553 49447296 +
4 domain predictions
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Lj2g3v1267190.1
n.a. PREDICTED: protein GDAP2 homolog isoform X2 [Cicer arietinum] gi|502094120|ref|XP_004490144.1| chr2 20148090 20156049 +
6 domain predictions
 –
Lj2g3v1267190.2
n.a. PREDICTED: protein GDAP2 homolog isoform X2 [Cicer arietinum] gi|502094120|ref|XP_004490144.1| chr2 20148090 20156049 +
5 domain predictions
 –
Lj2g3v1647680.1
n.a. PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Cicer arietinum] gi|502161649|ref|XP_004512237.1| chr2 25669871 25674291 -
3 domain predictions
 –
Lj2g3v1659240.1
n.a. PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Cicer arietinum] gi|502161649|ref|XP_004512237.1| chr2 25816786 25818241 -
4 domain predictions
 –
Lj2g3v1728990.1
n.a. PREDICTED: sec14 cytosolic factor-like [Cicer arietinum] gi|502161206|ref|XP_004512075.1| chr2 26616928 26617348 -
3 domain predictions
 –
Lj2g3v2002020.1
n.a. Sec14 cytosolic factor [Medicago truncatula] gi|357482025|ref|XP_003611298.1| chr2 30135002 30138381 +
3 domain predictions
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Lj3g3v1943270.1
n.a. SEC14 cytosolic factor [Medicago truncatula] gi|357456063|ref|XP_003598312.1| chr3 24983947 24991119 -
6 domain predictions
 –
Lj3g3v3188450.1
n.a. Sec14 cytosolic factor [Medicago truncatula] gi|357472733|ref|XP_003606651.1| chr3 39275437 39280599 -
6 domain predictions
 –
Lj3g3v3363570.1
n.a. CM0216.420.nc [Lotus japonicus] gi|164564743|dbj|BAF98224.1| chr3 41420773 41425903 +
6 domain predictions
 –
Lj3g3v3363580.1
n.a. CM0216.430.nc [Lotus japonicus] gi|164564744|dbj|BAF98225.1| chr3 41427444 41432686 -
6 domain predictions
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Lj3g3v3753340.1
n.a. PREDICTED: patellin-3-like [Cicer arietinum] gi|502146269|ref|XP_004506378.1| chr3 45475577 45484327 +
6 domain predictions
 –
Lj3g3v3753350.1
n.a. PREDICTED: patellin-3-like [Cicer arietinum] gi|502146269|ref|XP_004506378.1| chr3 45481575 45485336 +
4 domain predictions
 –
Lj3g3v3753370.1
n.a. PREDICTED: patellin-3-like [Fragaria vesca subsp]. vesca] gi|470127731|ref|XP_004299816.1| chr3 45489656 45492670 -
6 domain predictions
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Lj4g3v0097310.1
n.a. PREDICTED: SEC14 cytosolic factor-like [Cicer arietinum] gi|502079765|ref|XP_004486361.1| chr4 856660 879670 +
6 domain predictions
 –
Lj4g3v0097310.3
n.a. polyphosphoinositide binding protein Ssh1p [Glycine max] gi|351722583|ref|NP_001237505.1| chr4 856660 861385 +
6 domain predictions
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Lj4g3v0949950.1
n.a. PREDICTED: random slug protein 5-like isoform X1 [Cicer arietinum] gi|502153203|ref|XP_004509254.1| chr4 13920942 13925305 +
6 domain predictions
 –
Lj4g3v0988870.1
n.a. phosphatidylinositol transfer-like protein II [Lotus japonicus] gi|14517816|gb|AAK64378.1|AF366901_1 chr4 14405014 14423368 +
5 domain predictions
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Lj4g3v0988870.2
n.a. phosphatidylinositol transfer-like protein II [Lotus japonicus] gi|14517816|gb|AAK64378.1|AF366901_1 chr4 14405014 14423368 +
5 domain predictions
 –
Lj4g3v1273700.1
n.a. Sec14 cytosolic factor [Medicago truncatula] gi|357482025|ref|XP_003611298.1| chr4 18699666 18703045 +
3 domain predictions
 –
Lj4g3v2118280.1
n.a. PREDICTED: patellin-5-like [Glycine max] gi|356507414|ref|XP_003522462.1| chr4 28921349 28922155 -
6 domain predictions
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Lj4g3v2858500.1
n.a. PREDICTED: patellin-5-like [Glycine max] gi|356527226|ref|XP_003532213.1| chr4 38223403 38226893 +
6 domain predictions
 –
Lj4g3v2871860.1
n.a. polyphosphoinositide binding protein Ssh2p [Glycine max] gi|351720699|ref|NP_001237441.1| chr4 38393661 38399534 +
6 domain predictions
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Lj5g3v0109840.1
n.a. Sec14p-like phosphatidylinositol transfer family protein isoform 1 [Theobroma cacao] gi|508706052|gb|EOX97948.1| chr5 1226428 1232303 -
6 domain predictions
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Lj5g3v0111990.1
n.a. Sec14p-like phosphatidylinositol transfer family protein isoform 1 [Theobroma cacao] gi|508706052|gb|EOX97948.1| chr5 1281285 1283788 -
6 domain predictions
 –
Lj5g3v0710960.1
n.a. PREDICTED: patellin-3-like [Glycine max] gi|356516429|ref|XP_003526897.1| chr5 10514246 10515787 -
6 domain predictions
 –
Lj5g3v1073860.1
n.a. PREDICTED: patellin-4-like [Glycine max] gi|356545867|ref|XP_003541355.1| chr5 17452764 17456058 -
6 domain predictions
 –
Lj5g3v2046140.1
n.a. Random slug protein [Medicago truncatula] gi|357444249|ref|XP_003592402.1| chr5 29511076 29514629 +
6 domain predictions
 –