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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003035
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 35 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.790s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v3373110.1
LjNin nodule inception protein [Lotus japonicus] gi|6448579|emb|CAB61243.1| chr2 43039240 43042638 +
3 domain predictions
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Lj0g3v0169309.1
n.a. PREDICTED: protein RKD2-like [Glycine max] gi|356519060|ref|XP_003528192.1| chr0 80937242 80938480 +
3 domain predictions
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Lj0g3v0280059.1
n.a. PREDICTED: protein RKD4-like [Cicer arietinum] gi|502136387|ref|XP_004502668.1| chr0 145251028 145252149 +
3 domain predictions
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Lj0g3v0358659.1
n.a. nodule inception protein [Lotus japonicus] gi|6448579|emb|CAB61243.1| chr0 188832157 188835627 +
3 domain predictions
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Lj1g3v2295200.1
n.a. NIN-like protein 1 [Lotus japonicus] gi|33468530|emb|CAE30324.1| chr1 26922420 26927485 +
3 domain predictions
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Lj1g3v2295200.2
n.a. NIN-like protein 1 [Lotus japonicus] gi|33468530|emb|CAE30324.1| chr1 26922420 26927485 +
3 domain predictions
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Lj1g3v2295200.4
n.a. NIN-like protein 1 [Lotus japonicus] gi|33468530|emb|CAE30324.1| chr1 26924102 26927485 +
3 domain predictions
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Lj2g3v0381780.1
n.a. PREDICTED: protein NLP6-like [Glycine max] gi|356529196|ref|XP_003533182.1| chr2 6070666 6077284 -
3 domain predictions
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Lj2g3v0381780.2
n.a. PREDICTED: protein NLP6-like [Glycine max] gi|356559792|ref|XP_003548181.1| chr2 6070666 6077284 -
3 domain predictions
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Lj2g3v1623180.1
n.a. PREDICTED: protein RKD5-like [Glycine max] gi|356495317|ref|XP_003516525.1| chr2 25428349 25433146 -
3 domain predictions
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Lj2g3v1643300.1
n.a. PREDICTED: protein RKD5-like [Glycine max] gi|356495317|ref|XP_003516525.1| chr2 25490354 25494943 +
3 domain predictions
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Lj3g3v0339060.1
n.a. NIN-like protein 2 [Lotus japonicus] gi|33468532|emb|CAE30325.1| chr3 2754440 2761858 -
3 domain predictions
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Lj3g3v3336070.1
n.a. PREDICTED: protein NLP8-like [Glycine max] gi|356541135|ref|XP_003539038.1| chr3 40548023 40554395 +
3 domain predictions
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Lj4g3v1635310.1
n.a. PREDICTED: protein RKD2-like [Glycine max] gi|356519060|ref|XP_003528192.1| chr4 24058357 24059595 +
3 domain predictions
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Lj5g3v1999250.1
n.a. PREDICTED: protein NLP6-like [Glycine max] gi|356535865|ref|XP_003536463.1| chr5 28144721 28149391 -
3 domain predictions
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Lj5g3v1999250.2
n.a. PREDICTED: protein NLP6-like [Glycine max] gi|356535865|ref|XP_003536463.1| chr5 28144721 28149391 -
3 domain predictions
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LotjaGi1g1v0001500.1
n.a. Plant regulator RWP-RK family protein; TAIR: AT4G35270.1 Plant regulator RWP-RK family protein; Swiss-Prot: sp|Q7X9B9|NLP2_ARATH Protein NLP2; TrEMBL-Plants: tr|Q9S7B1|Q9S7B1_LOTJA Nodule inception protein; Found in the gene: LotjaGi1g1v0001500 LjG1.1_chr1 494119 498452 -
3 domain predictions
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LotjaGi1g1v0287600.1
n.a. RWP-RK domain protein; TAIR: AT5G53040.1 RWP-RK domain-containing protein; Swiss-Prot: sp|Q9LVU8|RKD4_ARATH Protein RKD4; TrEMBL-Plants: tr|G7J7G0|G7J7G0_MEDTR RWP-RK domain protein; Found in the gene: LotjaGi1g1v0287600 LjG1.1_chr1 69798440 69800374 -
3 domain predictions
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LotjaGi1g1v0436300.1
n.a. Plant regulator RWP-RK family protein; TAIR: AT1G20640.1 Plant regulator RWP-RK family protein; Swiss-Prot: sp|Q9LE38|NLP4_ARATH Protein NLP4; TrEMBL-Plants: tr|Q7X9C1|Q7X9C1_LOTJA NIN-like protein 1; Found in the gene: LotjaGi1g1v0436300 LjG1.1_chr1 93068326 93074081 +
3 domain predictions
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LotjaGi1g1v0436300.2
n.a. Plant regulator RWP-RK family protein; TAIR: AT1G20640.1 Plant regulator RWP-RK family protein; Swiss-Prot: sp|Q9LE38|NLP4_ARATH Protein NLP4; TrEMBL-Plants: tr|Q7X9C1|Q7X9C1_LOTJA NIN-like protein 1; Found in the gene: LotjaGi1g1v0436300 LjG1.1_chr1 93068326 93074081 +
3 domain predictions
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LotjaGi1g1v0436300.3
n.a. Plant regulator RWP-RK family protein; TAIR: AT1G20640.1 Plant regulator RWP-RK family protein; Swiss-Prot: sp|Q9LE38|NLP4_ARATH Protein NLP4; TrEMBL-Plants: tr|Q7X9C1|Q7X9C1_LOTJA NIN-like protein 1; Found in the gene: LotjaGi1g1v0436300 LjG1.1_chr1 93068326 93074081 +
3 domain predictions
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LotjaGi1g1v0436300.4
n.a. Plant regulator RWP-RK family protein; TAIR: AT1G20640.1 Plant regulator RWP-RK family protein; Swiss-Prot: sp|Q9LE38|NLP4_ARATH Protein NLP4; TrEMBL-Plants: tr|Q7X9C1|Q7X9C1_LOTJA NIN-like protein 1; Found in the gene: LotjaGi1g1v0436300 LjG1.1_chr1 93068397 93073971 +
3 domain predictions
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LotjaGi1g1v0436300.5
n.a. Plant regulator RWP-RK family protein; TAIR: AT1G20640.1 Plant regulator RWP-RK family protein; Swiss-Prot: sp|Q9LE38|NLP4_ARATH Protein NLP4; TrEMBL-Plants: tr|Q7X9C1|Q7X9C1_LOTJA NIN-like protein 1; Found in the gene: LotjaGi1g1v0436300 LjG1.1_chr1 93068952 93074041 +
3 domain predictions
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LotjaGi1g1v0694100_LC.1
n.a. RWP-RK domain-containing protein, putative; TAIR: AT5G53040.1 RWP-RK domain-containing protein; Swiss-Prot: sp|Q9LVU8|RKD4_ARATH Protein RKD4; TrEMBL-Plants: tr|A0A1J7GCF4|A0A1J7GCF4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0694100_LC LjG1.1_chr1 126163739 126164666 +
3 domain predictions
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LotjaGi2g1v0141400_LC.2
n.a. Plant regulator RWP-RK family protein; TAIR: AT1G64530.1 Plant regulator RWP-RK family protein; Swiss-Prot: sp|Q8RWY4|NLP6_ARATH Protein NLP6; TrEMBL-Plants: tr|K7LDR9|K7LDR9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0141400_LC LjG1.1_chr2 51461247 51468163 -
3 domain predictions
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LotjaGi2g1v0141400_LC.3
n.a. Plant regulator RWP-RK family protein; TAIR: AT1G64530.1 Plant regulator RWP-RK family protein; Swiss-Prot: sp|Q8RWY4|NLP6_ARATH Protein NLP6; TrEMBL-Plants: tr|K7LDR9|K7LDR9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0141400_LC LjG1.1_chr2 51461247 51468163 -
3 domain predictions
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LotjaGi2g1v0141400_LC.5
n.a. Plant regulator RWP-RK family protein; TAIR: AT1G64530.1 Plant regulator RWP-RK family protein; Swiss-Prot: sp|Q8RWY4|NLP6_ARATH Protein NLP6; TrEMBL-Plants: tr|K7LDR9|K7LDR9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0141400_LC LjG1.1_chr2 51461343 51467989 -
3 domain predictions
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LotjaGi2g1v0355400.1
n.a. RWP-RK domain containing protein; TAIR: AT4G35590.1 RWP-RK domain-containing protein; Swiss-Prot: sp|O81791|RKD5_ARATH Protein RKD5; TrEMBL-Plants: tr|I1J8D1|I1J8D1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0355400 LjG1.1_chr2 83152874 83158025 +
3 domain predictions
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LotjaGi2g1v0355400.2
n.a. RWP-RK domain containing protein; TAIR: AT4G35590.1 RWP-RK domain-containing protein; Swiss-Prot: sp|O81791|RKD5_ARATH Protein RKD5; TrEMBL-Plants: tr|I1J8D1|I1J8D1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0355400 LjG1.1_chr2 83152874 83158025 +
3 domain predictions
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LotjaGi3g1v0030100.1
n.a. Plant regulator RWP-RK family protein; TAIR: AT2G43500.1 Plant regulator RWP-RK family protein; Swiss-Prot: sp|O22864|NLP8_ARATH Protein NLP8; TrEMBL-Plants: tr|Q7X9C0|Q7X9C0_LOTJA NIN-like protein 2; Found in the gene: LotjaGi3g1v0030100 LjG1.1_chr3 3255025 3262635 -
3 domain predictions
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LotjaGi3g1v0501000.1
n.a. Plant regulator RWP-RK family protein; TAIR: AT2G43500.1 Plant regulator RWP-RK family protein; Swiss-Prot: sp|O22864|NLP8_ARATH Protein NLP8; TrEMBL-Plants: tr|I1LQB5|I1LQB5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0501000 LjG1.1_chr3 91958145 91964686 +
3 domain predictions
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LotjaGi3g1v0501000.2
n.a. Plant regulator RWP-RK family protein; TAIR: AT2G43500.1 Plant regulator RWP-RK family protein; Swiss-Prot: sp|O22864|NLP8_ARATH Protein NLP8; TrEMBL-Plants: tr|I1LQB5|I1LQB5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0501000 LjG1.1_chr3 91958196 91964561 +
3 domain predictions
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LotjaGi5g1v0299300.1
n.a. Plant regulator RWP-RK family protein; TAIR: AT4G24020.1 NIN like protein 7; Swiss-Prot: sp|Q84TH9|NLP7_ARATH Protein NLP7; TrEMBL-Plants: tr|A0A0B2PWM9|A0A0B2PWM9_GLYSO Protein NLP7; Found in the gene: LotjaGi5g1v0299300 LjG1.1_chr5 61580416 61585164 -
3 domain predictions
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LotjaGi5g1v0299300.2
n.a. Plant regulator RWP-RK family protein; TAIR: AT4G24020.1 NIN like protein 7; Swiss-Prot: sp|Q84TH9|NLP7_ARATH Protein NLP7; TrEMBL-Plants: tr|A0A0B2PWM9|A0A0B2PWM9_GLYSO Protein NLP7; Found in the gene: LotjaGi5g1v0299300 LjG1.1_chr5 61580431 61585156 -
3 domain predictions
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LotjaGi5g1v0299300.3
n.a. Plant regulator RWP-RK family protein; TAIR: AT4G24020.1 NIN like protein 7; Swiss-Prot: sp|Q84TH9|NLP7_ARATH Protein NLP7; TrEMBL-Plants: tr|A0A0B2PWM9|A0A0B2PWM9_GLYSO Protein NLP7; Found in the gene: LotjaGi5g1v0299300 LjG1.1_chr5 61580523 61583910 -
3 domain predictions
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