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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004864
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 112 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 5.610s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0066379.1
n.a. late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana] gi|18401372|ref|NP_565642.1| chr0 23344005 23345330 -
2 domain predictions
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Lj0g3v0113659.1
n.a. NDR1/HIN1-like 1 [Theobroma cacao] gi|508716551|gb|EOY08448.1| chr0 49687043 49688542 +
2 domain predictions
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Lj0g3v0115719.1
n.a. late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana] gi|42570985|ref|NP_973566.1| chr0 50864444 50865602 +
2 domain predictions
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Lj0g3v0163869.1
n.a. OSJNBa0039K24.20 [Oryza sativa Japonica Group] gi|38345517|emb|CAE01801.2| chr0 77497966 77499803 -
2 domain predictions
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Lj0g3v0219279.1
n.a. At4g26490 [Arabidopsis thaliana] gi|45752744|gb|AAS76270.1| chr0 112046055 112047152 -
2 domain predictions
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Lj0g3v0227929.1
n.a. harpin inducing protein 1-like 9 [Nicotiana tabacum] gi|47971182|dbj|BAD22533.1| chr0 117802861 117804301 -
2 domain predictions
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Lj0g3v0250919.1
n.a. Late embryogenesis abundant hydroxyproline-rich glycoprotein family [Theobroma cacao] gi|508717952|gb|EOY09849.1| chr0 130087373 130089128 +
2 domain predictions
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Lj0g3v0267629.1
n.a. Harpin inducing protein [Medicago truncatula] gi|357499131|ref|XP_003619854.1| chr0 138667104 138668518 +
2 domain predictions
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Lj0g3v0284229.1
n.a. plant cell wall protein SlTFR88 [Solanum lycopersicum] gi|350534998|ref|NP_001233914.1| chr0 147458895 147460987 -
2 domain predictions
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Lj0g3v0284239.1
n.a. seed maturation protein PM22 [Glycine max] gi|351727629|ref|NP_001237935.1| chr0 147462599 147463681 -
2 domain predictions
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Lj0g3v0290529.1
n.a. PREDICTED: protein NDR1-like [Glycine max] gi|356569943|ref|XP_003553153.1| chr0 150855495 150857141 +
2 domain predictions
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Lj0g3v0312559.1
n.a. OSJNBa0039K24.20 [Oryza sativa Japonica Group] gi|38345517|emb|CAE01801.2| chr0 163206528 163208397 +
2 domain predictions
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Lj0g3v0344119.1
n.a. plant cell wall protein SlTFR88 [Solanum lycopersicum] gi|350534998|ref|NP_001233914.1| chr0 180447720 180449561 -
2 domain predictions
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Lj0g3v0344129.1
n.a. plant cell wall protein SlTFR88 [Solanum lycopersicum] gi|350534998|ref|NP_001233914.1| chr0 180451426 180452099 -
2 domain predictions
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Lj0g3v0350329.1
n.a. Os06g0710400 [Oryza sativa Japonica Group] gi|297725253|ref|NP_001174990.1| chr0 184072363 184073522 +
2 domain predictions
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Lj0g3v0353019.1
n.a. Avr9/Cf-9 rapidly elicited protein [Medicago truncatula] gi|357493591|ref|XP_003617084.1| chr0 185716677 185717429 +
2 domain predictions
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Lj0g3v0356229.1
n.a. late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family member [Arabidopsis thaliana] gi|145345312|ref|NP_194379.3| chr0 187614777 187616028 -
2 domain predictions
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Lj1g3v0052370.1
n.a. PREDICTED: protein NDR1-like [Cicer arietinum] gi|502112677|ref|XP_004494408.1| chr1 463913 464482 -
2 domain predictions
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Lj1g3v0053670.1
n.a. Harpin-induced 1 [Medicago truncatula] gi|92896037|gb|ABE93043.1| chr1 629468 630025 +
2 domain predictions
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Lj1g3v1075660.1
n.a. PREDICTED: protein NDR1-like [Glycine max] gi|356509153|ref|XP_003523316.1| chr1 13184743 13185942 -
2 domain predictions
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Lj1g3v2557420.1
n.a. Harpin-induced protein 1 containing protein, expressed [Oryza sativa Japonica Group] gi|77548401|gb|ABA91198.1| chr1 29417772 29418635 -
2 domain predictions
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Lj1g3v2558430.1
n.a. Harpin-induced 1 [Medicago truncatula] gi|92896037|gb|ABE93043.1| chr1 29422046 29422627 -
2 domain predictions
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Lj1g3v3022360.1
n.a. Avr9/Cf-9 rapidly elicited protein [Medicago truncatula] gi|357493591|ref|XP_003617084.1| chr1 34381473 34382674 +
2 domain predictions
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Lj1g3v4729270.1
n.a. syringolide-induced protein B13-1-9 [Glycine max] gi|351726220|ref|NP_001237119.1| chr1 56581027 56582049 -
2 domain predictions
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Lj1g3v4729280.1
n.a. n.a. chr1 56581027 56588220 +
2 domain predictions
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Lj1g3v4729290.1
n.a. syringolide-induced protein B13-1-9 [Glycine max] gi|351726220|ref|NP_001237119.1| chr1 56587249 56588220 -
2 domain predictions
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Lj1g3v4729300.1
n.a. NDR1/HIN1-like 1 [Theobroma cacao] gi|508716551|gb|EOY08448.1| chr1 56601941 56603895 -
2 domain predictions
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Lj1g3v4729310.1
n.a. n.a. chr1 56601941 56607122 +
2 domain predictions
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Lj1g3v5060670.1
n.a. PREDICTED: protein NDR1-like [Glycine max] gi|356573273|ref|XP_003554787.1| chr1 61885501 61888159 +
2 domain predictions
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Lj2g3v0777280.1
n.a. Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family isoform 1 [Theobroma cacao] gi|508783562|gb|EOY30818.1| chr2 12377314 12379524 -
2 domain predictions
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Lj2g3v0808920.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508783513|gb|EOY30769.1| chr2 12676956 12679403 +
2 domain predictions
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Lj2g3v1550440.1
n.a. Os06g0710400 [Oryza sativa Japonica Group] gi|297725253|ref|NP_001174990.1| chr2 24702343 24704267 -
2 domain predictions
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Lj2g3v2470450.1
n.a. PREDICTED: protein NDR1-like [Cicer arietinum] gi|502096464|ref|XP_004490745.1| chr2 34691451 34692628 +
2 domain predictions
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Lj2g3v2974800.1
n.a. Avr9/Cf-9 rapidly elicited protein [Medicago truncatula] gi|357493591|ref|XP_003617084.1| chr2 38446929 38448744 -
2 domain predictions
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Lj2g3v3007530.1
n.a. Desiccation protectant protein Lea14-like protein [Medicago truncatula] gi|357493805|ref|XP_003617191.1| chr2 38869029 38871760 -
2 domain predictions
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Lj3g3v0180790.1
n.a. Late embryogenesis abundant hydroxyproline-rich glycofamily protein isoform 3 [Theobroma cacao] gi|508779501|gb|EOY26757.1| chr3 1212674 1215306 -
2 domain predictions
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Lj3g3v0311080.1
n.a. PREDICTED: chaperonin CPN60-like 2, mitochondrial-like [Glycine max] gi|356522190|ref|XP_003529730.1| chr3 2333912 2335588 +
2 domain predictions
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Lj3g3v0461410.1
n.a. Harpin-induced 1 [Medicago truncatula] gi|92896037|gb|ABE93043.1| chr3 4866080 4868469 -
2 domain predictions
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Lj3g3v1239920.1
n.a. NHL1 [Medicago truncatula] gi|357453149|ref|XP_003596851.1| chr3 16130293 16131142 -
2 domain predictions
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Lj3g3v1239940.1
n.a. Uncharacterized protein TCM_041273 [Theobroma cacao] gi|508786061|gb|EOY33317.1| chr3 16154756 16155286 -
2 domain predictions
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Lj3g3v1531180.1
n.a. Harpin-induced 1 [Medicago truncatula] gi|92896037|gb|ABE93043.1| chr3 19652042 19652605 -
2 domain predictions
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Lj3g3v1541240.1
n.a. PREDICTED: protein NDR1-like [Cicer arietinum] gi|502112677|ref|XP_004494408.1| chr3 19677204 19677773 -
2 domain predictions
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Lj3g3v2692980.1
n.a. PREDICTED: chaperonin CPN60-like 2, mitochondrial-like [Glycine max] gi|356522190|ref|XP_003529730.1| chr3 32787507 32788737 -
2 domain predictions
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Lj3g3v2948630.1
n.a. Uncharacterized protein TCM_041273 [Theobroma cacao] gi|508786061|gb|EOY33317.1| chr3 36760476 36761006 +
2 domain predictions
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Lj3g3v3553990.2
n.a. Group 2 isoform 1 [Theobroma cacao] gi|508705637|gb|EOX97533.1| chr3 43310869 43313973 -
2 domain predictions
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Lj4g3v0109400.1
n.a. n.a. chr4 928101 929188 -
2 domain predictions
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Lj4g3v0630970.1
n.a. Harpin inducing protein [Medicago truncatula] gi|357499131|ref|XP_003619854.1| chr4 9879997 9880629 -
2 domain predictions
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Lj4g3v3001260.1
n.a. plant cell wall protein SlTFR88 [Solanum lycopersicum] gi|350534998|ref|NP_001233914.1| chr4 39596105 39597318 +
2 domain predictions
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Lj4g3v3004160.1
n.a. late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana] gi|15236666|ref|NP_194124.1| chr4 39893102 39894252 -
2 domain predictions
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Lj4g3v3114020.1
n.a. OSJNBa0039K24.20 [Oryza sativa Japonica Group] gi|38345517|emb|CAE01801.2| chr4 41861005 41862272 -
2 domain predictions
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