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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006189
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 25 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.288s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0108729.1
n.a. histidine kinase 1 [Lotus japonicus] gi|113911570|gb|ABI48271.1| chr0 47040790 47047766 +
4 domain predictions
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Lj0g3v0108739.1
n.a. histidine kinase 1 [Lotus japonicus] gi|113911570|gb|ABI48271.1| chr0 47040916 47047707 +
4 domain predictions
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Lj0g3v0327979.1
n.a. PREDICTED: histidine kinase 3-like [Glycine max] gi|356512385|ref|XP_003524900.1| chr0 171441705 171447984 -
4 domain predictions
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Lj0g3v0327999.1
n.a. Histidine kinase [Medicago truncatula] gi|357462961|ref|XP_003601762.1| chr0 171456279 171457908 -
3 domain predictions
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Lj2g3v0136400.1
n.a. histidine kinase 2 [Lotus japonicus] gi|113911568|gb|ABI48270.1| chr2 2426388 2431144 +
4 domain predictions
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Lj2g3v3338860.1
n.a. PREDICTED: histidine kinase 2-like [Glycine max] gi|356553458|ref|XP_003545073.1| chr2 42466717 42476518 +
4 domain predictions
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Lj2g3v3338860.2
n.a. PREDICTED: histidine kinase 2-like [Glycine max] gi|356553458|ref|XP_003545073.1| chr2 42467555 42476518 +
4 domain predictions
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Lj4g3v0210330.1
n.a. PREDICTED: histidine kinase 3-like [Glycine max] gi|356512385|ref|XP_003524900.1| chr4 2652352 2655316 -
4 domain predictions
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Lj4g3v3113830.1
n.a. histidine kinase 1 [Lotus japonicus] gi|113911570|gb|ABI48271.1| chr4 41776264 41783055 -
4 domain predictions
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LotjaGi1g1v0008500.1
n.a. Histidine kinase; TAIR: AT5G35750.1 histidine kinase 2; Swiss-Prot: sp|Q9C5U2|AHK2_ARATH Histidine kinase 2; TrEMBL-Plants: tr|A0A023W2C6|A0A023W2C6_LOTJA Histidine kinase 2; Found in the gene: LotjaGi1g1v0008500 LjG1.1_chr1 1114796 1127418 -
4 domain predictions
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LotjaGi2g1v0003400.1
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1439325 1457042 -
4 domain predictions
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LotjaGi2g1v0003400.2
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1439325 1457042 -
4 domain predictions
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LotjaGi2g1v0003400.3
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1440759 1456175 -
3 domain predictions
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LotjaGi2g1v0003400.4
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1440759 1456800 -
4 domain predictions
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LotjaGi2g1v0003400.5
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1440759 1456800 -
3 domain predictions
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LotjaGi2g1v0003400.6
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1443526 1456488 -
4 domain predictions
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LotjaGi2g1v0003400.7
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1448519 1456009 -
4 domain predictions
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LotjaGi2g1v0003400.8
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1448519 1456009 -
4 domain predictions
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LotjaGi4g1v0366800_LC.1
n.a. Histidine kinase; TAIR: AT1G27320.1 histidine kinase 3; Swiss-Prot: sp|Q9C5U1|AHK3_ARATH Histidine kinase 3; TrEMBL-Plants: tr|A0A023W3N9|A0A023W3N9_LOTJA Histidine kinase 3 variant 1; Found in the gene: LotjaGi4g1v0366800_LC LjG1.1_chr4 74666662 74671209 +
4 domain predictions
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LotjaGi4g1v0366900.1
n.a. Histidine kinase; TAIR: AT1G27320.1 histidine kinase 3; Swiss-Prot: sp|Q9C5U1|AHK3_ARATH Histidine kinase 3; TrEMBL-Plants: tr|A0A023W3N9|A0A023W3N9_LOTJA Histidine kinase 3 variant 1; Found in the gene: LotjaGi4g1v0366900 LjG1.1_chr4 74675995 74684564 +
4 domain predictions
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LotjaGi4g1v0366900.2
n.a. Histidine kinase; TAIR: AT1G27320.1 histidine kinase 3; Swiss-Prot: sp|Q9C5U1|AHK3_ARATH Histidine kinase 3; TrEMBL-Plants: tr|A0A023W2K9|A0A023W2K9_LOTJA Histidine kinase 3 variant 2; Found in the gene: LotjaGi4g1v0366900 LjG1.1_chr4 74676046 74684422 +
4 domain predictions
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LotjaGi4g1v0366900.3
n.a. Histidine kinase; TAIR: AT1G27320.1 histidine kinase 3; Swiss-Prot: sp|Q9C5U1|AHK3_ARATH Histidine kinase 3; TrEMBL-Plants: tr|A0A023W2K9|A0A023W2K9_LOTJA Histidine kinase 3 variant 2; Found in the gene: LotjaGi4g1v0366900 LjG1.1_chr4 74676694 74683363 +
4 domain predictions
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LotjaGi4g1v0459800.1
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A0PEY0|A0PEY0_LOTJA Cytokinin receptor 1; Found in the gene: LotjaGi4g1v0459800 LjG1.1_chr4 83061838 83069902 -
4 domain predictions
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LotjaGi4g1v0459800.2
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A0PEY0|A0PEY0_LOTJA Cytokinin receptor 1; Found in the gene: LotjaGi4g1v0459800 LjG1.1_chr4 83061938 83069826 -
4 domain predictions
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LotjaGi4g1v0459800.3
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A0PEY0|A0PEY0_LOTJA Cytokinin receptor 1; Found in the gene: LotjaGi4g1v0459800 LjG1.1_chr4 83061985 83069668 -
4 domain predictions
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